TCONS_00047730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047730
Unique NameTCONS_00047730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047730 ID=TCONS_00047730|Name=TCONS_00047730|organism=Clytia hemisphaerica|type=transcript|length=688bp
TACCttgtaaaattttttaaatcaagtgcCGAAACACCGAAAACAATTCC
aaatttaacagcaaaatatcGTTTACAAATAGTTTGATTTGGCTTGATAA
AAATGACGTCTATCTCTTTTTATAATTACAAATCTTTGTAGGGACTCGAT
ACCGAAAAAGTCTGCATTTTCCATTCATACATATACTTGTTCTATGTACT
TCGAACGCCAAACTGGCAGAACAAATAGGTCGTGATGAAACTCTATGTGT
ACGGGCATGGCTCATTATGTTGGTCGAGTTGGTTTCTTTAATAGTACTCT
GATATCTTGAAAGAGGTTGTTGATATGTGGATATAGAAGGTATGGTCGTG
GAGGCTCCTGTTGTGAAACTCGTGTTTGTTATTTCGGCTGTTACATGGCC
TTCATTTGGAAGTTCTTCATTATGTGGTTTGGCTGTTGGTATATGTCCGT
TGAGCAGGTgaattgcaatttttctacattttGCTTTCGCCTTTCTTGTG
CATCGTCGGTAAGGGCCTCCATTGGTTCTGTTACATAATTCTCGAGCCTT
TTCTTTACATAGTTTTGTCAATGTAGCTTCTCCCGtgtaaataaatacaa
aaatcaaaataatcggTAAAGATTTTAATGCCATTTTATTCCTTTAACAT
TCCCTTTTCACGAAAAAAATGCCACCATACTCGAAACT
Run BLAST on NCBI

protein sequence of TCONS_00047730-protein

>TCONS_00047730-protein ID=TCONS_00047730-protein|Name=TCONS_00047730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MALKSLPIILIFVFIYTGEATLTKLCKEKARELCNRTNGGPYRRCTRKAK
AKCRKIAIHLLNGHIPTAKPHNEELPNEGHVTAEITNTSFTTGASTTIPS
ISTYQQPLSRYQSTIKETNSTNIMSHARTHRVSSRPICSASLAFEVHRTS
ICMNGKCRLFRYRVPTKICNYKKR
Run BLAST on NCBI

transcript from alignment at scaffold_135:1091..1778

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047730 ID=TCONS_00047730|Name=TCONS_00047730|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_135:1091..1778 (Clytia hemisphaerica)
AGTTTCGAGTATGGTGGCATTTTTTTCGTGAAAAGGGAATGTTAAAGGAA
TAAAATGGCATTAAAATCTTTAccgattattttgatttttgtatttattt
acaCGGGAGAAGCTACATTGACAAAACTATGTAAAGAAAAGGCTCGAGAA
TTATGTAACAGAACCAATGGAGGCCCTTACCGACGATGCACAAGAAAGGC
GAAAGCaaaatgtagaaaaattgcaattcACCTGCTCAACGGACATATAC
CAACAGCCAAACCACATAATGAAGAACTTCCAAATGAAGGCCATGTAACA
GCCGAAATAACAAACACGAGTTTCACAACAGGAGCCTCCACGACCATACC
TTCTATATCCACATATCAACAACCTCTTTCAAGATATCAGAGTACTATTA
AAGAAACCAACTCGACCAACATAATGAGCCATGCCCGTACACATAGAGTT
TCATCACGACCTATTTGTTCTGCCAGTTTGGCGTTCGAAGTACATAGAAC
AAGTATATGTATGAATGGAAAATGCAGACTTTTTCGGTATCGAGTCCCTA
CAAAGATTTGTAATTATAAAAAGAGATAGACGTCATTTTTATCAAGCCAA
ATCAAACTATTTGTAAACgatattttgctgttaaatttGGAATTGTTTTC
GGTGTTTCGgcacttgatttaaaaaattttacaaGGTA

Coding sequence (CDS) from alignment at scaffold_135:1091..1778

>TCONS_00047730 ID=TCONS_00047730|Name=TCONS_00047730|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_135:1091..1778 (Clytia hemisphaerica)
ATGGCATTAAAATCTTTAccgattattttgatttttgtatttatttacaC
GGGAGAAGCTACATTGACAAAACTATGTAAAGAAAAGGCTCGAGAATTAT
GTAACAGAACCAATGGAGGCCCTTACCGACGATGCACAAGAAAGGCGAAA
GCaaaatgtagaaaaattgcaattcACCTGCTCAACGGACATATACCAAC
AGCCAAACCACATAATGAAGAACTTCCAAATGAAGGCCATGTAACAGCCG
AAATAACAAACACGAGTTTCACAACAGGAGCCTCCACGACCATACCTTCT
ATATCCACATATCAACAACCTCTTTCAAGATATCAGAGTACTATTAAAGA
AACCAACTCGACCAACATAATGAGCCATGCCCGTACACATAGAGTTTCAT
CACGACCTATTTGTTCTGCCAGTTTGGCGTTCGAAGTACATAGAACAAGT
ATATGTATGAATGGAAAATGCAGACTTTTTCGGTATCGAGTCCCTACAAA
GATTTGTAATTATAAAAAGAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030396XLOC_030396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047730-proteinTCONS_00047730-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047730-exon-scaffold_135-1491911889:1091..1778TCONS_00047730-exon-scaffold_135-1491911889:1091..1778Clytia hemisphaericaexon
TCONS_00047730-exon-scaffold_135-1510915933:1091..1778TCONS_00047730-exon-scaffold_135-1510915933:1091..1778Clytia hemisphaericaexon
TCONS_00047730-exon-scaffold_135-1575043694:1091..1778TCONS_00047730-exon-scaffold_135-1575043694:1091..1778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_135supercontigscaffold_135:1091..1778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.599295	0.236785	0.285672	0	0	0.0773101	0.300156	0.0493277	2.51222	1.33006	0.0841145	0.722142	0.556013	0.968822	6.53493	7.74462	2.07673	2.51493	7.64306	8.18397	8.50882	10.8586	0	0	0.246623	0.418784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top