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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047740 ID=TCONS_00047740|Name=TCONS_00047740|organism=Clytia hemisphaerica|type=transcript|length=2855bp
GTTTAGACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTG
CTACACAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATG
AATGAAAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCT
TCTGCTGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCA
TGTCGCATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCT
TCCCTTGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGT
TGATGAATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAG
AGGACGCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACAT
GTACAAAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgc
taaaatgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGA
CATCTGTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGA
CCCAATGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCT
TGATATTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGG
AAGGACCTGCACCAGGAACTGGTGAAAAGaaattctGTTCCCAAGTATTT
ATTGGAAAGATACCAAGAGACATGTATGAAGATGAATTGGTTCCGCTGTT
TGAGCCTTATGGTCAAATCTATGATTTACGTATTATGGTTGATCCTTTTA
GTGGACTGAACAAAGGTTATGCATTTGTTACATACAGTACCAAAGAAGGA
GCACAAAGTTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGTGGGAA
AAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGTTGGAT
CTATTCCTAAGACAAAAACCAAACAAGATATCATGGAAGAATTTAAGACC
AAAGTTGAGGAGTTGACAGATGTTATTATGTACTTTTCTGCAgaggataa
aaataaaaacagaggTTTTGCTTTCCTTGACTTTGCCACACACAAAGATG
CTGCTCAGGCAagacgaaaattgcaaagtgggCGTATCAAGGTTTTTGGA
CACATTACTCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCAAATGA
TGAAGTCATGTCTAAGgTGAAAGTTGTCTATGTCAGACATTTATCTCCAG
CCATCGACGAAAACAAATTGAATGAACTTTTCGAACAATATGGTCCTGTT
GAGAAAGTGAAAAAGATTAAGGATTATGCTTTCATTAACTTTGCTAACAG
GGATGATGCAATGAGAGCTATTGAGGAACTTGATAACCAAGAATTGGACG
ATTTAAAAATTTCAGTACAACTTGCTAAACCTCAAGTAGATAAAACAGGT
CAACGACGTGGGCAATCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGTC
TGACAATTTTGTCCCCAGAGGAAGAGGTGGTTTTTCTGGTCGTGGAGCTG
GTGGCCCAAGAGGGCGTGGAAGAGGAGGATTTGGAGGTGGTTTCTCACAT
GGAGGGAACTACTCTCAAGGTGGATATAGAGGTTATGGAGATGACTCTTA
TGATGACTACTATGCACCACCAGCCAGACCTCGTGGTGGTCCACCAAGCC
GTGGCCCAAGTCGTGGTGGAGCAATGAGAGGGGGAAGAGGTAGTCCTCGA
GGAGGTTCAACTGGTGGTTTCCGTGGTGCTTCCAGAGGTGGATCATCTAG
AGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAACAGAGGGCGTGGTG
GCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAGAGGTGGATCATCT
AGAGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAACAGAGGGCGTGG
TGGCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAGAGGTGGATCAA
GAGGAGGTACTGGTGGTTATGGCTCAAGAGGACGTGGTGCTGGGGCACCA
AAAAGGAAAGCAGATTATGGTGGTGATTATGGCACCCCCTCTAAACGTAA
GAATGAGTGGAACTCCCAACCCATTGCCCAACAACCCCTTGGTAACTCAT
CCAGCAACTATTACAATGATGACTACAGTGGCGGTGACTGGTACACAGAT
TTATCTGAGCCCAGATGGCAATAAAAATCTTTTctcaaaaacacaagaaa
aaggcATACACCAAATATTTGGatttaaaactctaaaacaagGCATTgct
taaaaactgaaaaaccaATGAagcattgatttttttcaagGATAACAACG
ATCACTAAATTAACCTCACGAAGAGTCAAAACGATTCAAATCTGTACAAT
TGTAAATTTactgaaagatttttaaaagcTTTCTATGATTTGAGAGGAAA
CTGAGAGATTAAAACAAGGACACAAAAGCTCATAAGTTCATACTTGTACA
GCCAAAATTTgctgttttattttataaaaaaatgtaaaaactggATGGTG
CTTATGTGGTGTTGTCgaaatgtaaaaatatttctttgcatCATTTTACA
GGTTTCGCTAACAAAGAAcatatatttttagtttttaataaACAAAACTT
TAGTTCATTCTCTTTCTTAAATAAAGTGTTGATTTAtgaaaacctttctt
tttggGGTttgtaaaattcaaatttcgaatCAAAGTCTTTGTCTCTTTTG
CTTATTCAAAATAAGCTGACTCCTTTAatttaaatgttaaaaaaattctt
tacagGGATTCAAATATATtccaaatttcatgtcgaagtgattgttttat
caaaa Run BLAST on NCBI transcript from alignment at scaffold_136:8315..22793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047740 ID=TCONS_00047740|Name=TCONS_00047740|organism=Clytia hemisphaerica|type=transcript|length=14479bp|location=Sequence derived from alignment at scaffold_136:8315..22793+ (Clytia hemisphaerica)
GTTTAGACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTG
CTACACAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATG
AATGAAAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCT
TCTGCTGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCA
TGTCGCATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCT
TCCCTTGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGT
TGATGAATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAG
AGGACGCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACAT
GTACAAAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgc
taaaatgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGA
CATCTGTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGA
CCCAATGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCT
TGATATTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGG
AAGGACCTGCACCAGGAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTTT
CCtgacttttttgtttatttaattttcgagtagtttgagtaaagaagaCA
AGTTATATAAATTTCATGCTCAAAGTCTAAGTTTCAACAGGATTACAATG
GGCTATTACAAATTGGTTGAaacaatctaaccttactccagacccgatca
atcgaacttgtcgaaccaatcgcaCAATCGAACTCCATCAAACGAATAAA
TTtcaatacaccttatcggaaattccacctcctcgcgttgttgctacgca
acactttttgggaggtaaacaaagctCGATACTGcgattttcaagcaaaa
agccttacaaaacacccaaaatattgatgccaaaagagcctccaaatcaa
ctgaagaaccaccgaagttcttgtttttctctttcttataGCTTCTGCta
tagcatcttgaaagctgtgttttgtttgtttttttcaaattcagtgtatt
tttaggaacataTAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTA
CGCGGGAACTTTTAGCGCTACTTGCACTGCCATTGGTCccatttatgttt
acctcccaatttcAACGGATCCATCTTAGCGCGattgtttttgtggaatt
tccgatagGCCGAGGGAATTGACATACCAGATTAGCGTCCGCCCGCGTGT
GTTTGGTGTAGCCGcgtaaaaatttcattattttaagaaaatttcattat
ttcacaGACAAACCTGAAAATTGAACTCCATCTCCTACAGCTATCATCAT
TGTCACCTAAAGTGCGAAAAATAACAATTTCCTGCGCGTGCGTCATAGCC
TCTGTTCGATCGGGACTTTAGTCCCCGTATACATCACACTACAAAAAATT
AAACCCGCTCTACactaaaagttttctttcaaatcgaACGATCGCGTAAG
TCTTTAATTTTACCGCCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCAC
GGATACTTCAATTTCTGTAACTGCACATGCGCAATACATACCCGAGAAGA
TGTTTTCAAAAGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTG
GATTTGTTGCTGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaat
gaaaatatgccGCATCTAGTTTCAGGCATGCTGGTGACGCTAAACTGGTA
TGTTAATTCCCTCGGCCTATAGAGGACAAagtcaacatttttcaaagaaa
atcattAGATTGGAAAATATTACTTTTTACGGTCTTGCTTTTCAACTGTT
TCTCCTAAGTCTaataaaaatgtcataaaaagaATTTTGCCCTAACTNAg
gtgtatttaaaaaatttattgaacctaatcgaacactcacaatttttgaa
gcaatcaatagcagttcgattagtttgtcAGTAAAAACTTTGATTAGTTC
CAGGATATtaggctattccatttttaaaccatacacgtttttttttttta
taaggaaccttaactttgctctgagcctggagttccttatttttacagag
aatttcagcctcaaagaacttatcgagttccttatttacatagctgctaa
gtttggattcgcaaaaTATTTAACTTCTTTATAATAGTATAACTtcttct
cagcctgagcagttccttaacaattccttattttttggaccattttcagc
ctcgggttccttataaacgtgttccttatataaaaaaaaacgtgtatata
caggggtattgacaaacGTTTCCAGGAggtctgagccttgattttccaag
gggtttttggtcattttcagattttccaagggggttattaaaGGTTCCAG
gtttttccagggggttctcCCCTCCTACCCTCCTAaacctttttcacaaa
atttcactttctaGGGGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGTT
CTCCCCTCCTAaacctttttcacaaaatttcactttctaGGGGTGTTGAC
TCCtataatttccaggggatagtttgttatcaaagatttccaggggggtt
agtgaaaaaagttcgtcaatacttctgtacaatttttttttggaatagcc
cattaaATCCTCATaatatcttccctcgcttgcaaaaacttaaTCCTGGC
ATGCTATTTcaacagttcccggacttaaccTCCCGGTcctcgacaaaaaa
ctttcaaattttttatcggcattaggccaataagggggtggggggtccaa
ctacataccgataaaaaaacaaatattgggacaaaaatcttttcagccaa
tttctttctgatttcgtccacaaactccactgaaagcatacaatttcact
tgctttcaccttcGCGCACAAATTAAcaactttaaaagtacagttttgaa
ttagctatgataaaaaaacccttttttcattggccagtGTGCTgccattt
ttttcgaaatgttGTGATTTCATCGCgtctttttaactttcgttttgatt
aacaatatcaatgcgggtatgaacaaactcaatgttggtgcaaATACATA
GACTAAAATTCAATGATGACGGGTGGAAAGGCAAGAATAATGCAATGGTG
Gacgtgattttggaaaaaattgtgttttccaagatgtaaaagttggtttc
gaaaaattttggccgataagagcaagggggagggggtctcaAGCTTATca
gcccaatgccgataaaaaattcgaaagatgTTTGTCAAAGACCCCTTACA
GTCAATACCTTTAGCCAAATTAAAAAAGTCCTGATTAGGAATATGAAGCA
AATACCTAGTGTTAAATAAGTATTTTCCAACCTAGTGATTGCCGATCCTT
GCTTGACCGGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAAA
ATGAACACAATCCAATTTGAACCAACACAAGAATCAATTTGAACGATGAT
CAATatcaattgatccaaataccaTTTACAGAATACACATAAAGCCCCTC
TGGCTATCATATATTATTGTTTATCACTTTGTATTATTCATCTATAATAT
AAGGTAGAGATTAACATctagattttctccaaaaatagaaaaaatcgcaT
GTTAAAAAGCACTTCATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCTT
GACTTGCTCGGGGGACCAAGCTACAATTCCACCATCCgcgaatgaaattt
ttcaattttttgcacagttatCATATTTGGTATACTGAATCTTTTGGTCA
TACTTGGAATTTGCAAATGTAGCTCGTTTCAGAGTTAttaaatttttaga
tatttcttcctaattaggaataggATTTCTAATTAGTAATCCtggtaaaa
gtaagaaaaatgttcctaatttggctaaaggtaTTGAccgggggggggtc
aacatttataataccaacccatagcccaaaaacctgacttttgagCTAAG
acaacaccaccaccccaaaattagtctacacaatagacagatccaggatt
ttaggccttactcttggtctataggcactgctataggtggccactagtga
cccccaccgggaattgtttattaataggtttaaagataatagacaacatt
cacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTTCCCATTTTTGTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGTG
TCGTTTAGGCTACGAATGATACGGTGTAGGAGTGAGTCGTCAGCAAATAA
AGCAAATGTGGATTCGGTTGTGAGTGGCAAATCGTTAATATATATGAGAA
AGAGTAATGGGCCCAATACAGATCCCTGTGGTACTCCTGATTCAACTTTT
GATTGTGGGGACGTAGATCCTCGGACAACAACACATTGGGTTCTGTTGGA
TAGAAAGTCAGTGATCCACGATAATATCTCATTTCGAATGCCGTAGTGAT
GTAATTTGATGAGTAGCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCTA
AAGTCTAGAAGGACTGAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTGC
AAATTTATCAACTGTTGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTGC
GAAAACCGTGTTGAGCATCACTAAGTGTACCGTCTTTCTCGAGATGGGTC
ATGATNGAAACACTGCAATAATGTTGATTGAGAAGTTGGGCGATTTCACC
ATCATCTGAGTGGGTTTGTCCATTTTTGTCAATGAGTGGCGCAACTCCGG
CAATATCATTTCGCTTAGATTtgatatatttaaaaagtttctttttattt
cctgTTACTGTCTCTTTAACGAAATTGTTTTTTGTGGTGTTACAGATCTT
TCTATAGTGTTTTGCTAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAAA
TTGACCATTTGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGTT
TAGTTCTTTCGAATACTGATTGGAAGTGATACTGTTGGTGTTCCAatcta
taggcggccactagtgacccccaccgggaattgtttattaataggtttaa
agataatagacaacattcacaaaagatgtttatcaatagagattttaaat
aaaagaatgtttaaaacacagctgattggcttaggtttcgaaactctatt
gtttcattaaaacctcagtgcgcatgcgatttatctggaaaatttcaata
ttcaaaacaagagcagtgctcatagcccgaagagtaggagttttacgctc
aaaacgaaggaagatatgacataGCCTACCCCAAAATTggtcgataccaa
cttgaaaatcataattttcagggAAAgggttggtatcgataccaacatga
ctttttggatttgacaaaatatcatgggacccaccccctaatttaccaat
accaatctgacaaatttaaGCTTAAAGCTGTTTAgaggggacccaccccc
tcccacacaaacagcCCTTGTAAtaagagaattttcaaaaaactcatttt
tgtaatactctttcttcaacacaacacagaaaatgtcatatgctaaaata
aaaaatgactgaaaactgacaatataataaaaacaaacccaatgaagcta
gcaaaatcaatctgaatcaatattatctgaatataattgattATTTTTCT
TGCTAAAAAGAAGAAGTATTGAATTTTCGCTCAAAGACCTCACAGATTCC
AGACAGTTTATTAGTTTAAATTATGGACTTGCACATTTTGCAAACCAAAT
TAGCTTAAAATGGCTTGTTTATTCGATTTGAatactttcgaatgttttaa
aatttcgaatattttttcgaaaattcgaatGTCTTTTgcccatttgaaat
tcgaattttcacaaaaagaaaaataaggttTCTTTACTCTGGTTTGTTTG
ATACTTACACTACATCCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTTT
TACCTTAATACAAAAACGACCAAGATAATAAAGAAATGCAGACTGTTTAA
TTTTTTCAGGGTATtagctataagggcaaaaattaggaaagttttgctgt
cattttgatatggatatcaactttctgaatcatcttatttaaaaaaaggg
gtacccaccccctattttggtatcaatacaaACCAtgaggataactcttt
tttttctaaaaaaagggggacccacccccatcaataccaacttgactttt
cagacttttaaaggaaaaaatgacaccaccacccggctatggctggtatc
tggatgttgacccccctGTATTGACATTTGTTGTAttcggatatttgtct
atccagAATAAAGTGTTTCGATTTCGCGCGCCGAGtagtggcggaatact
acgccccaacaaaccaCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgta
acccgttatcggaagtaatttcccaaTTTACGTTatgaatttggctttga
aaagaggCTAATATTGGTTTAtcaaactgatcgaaccgatcaaacttaat
cgaacactcacaatctttaaaaaatcttagagctcgattaaattttttaa
tcaaactttaatcattCAATGGagttcaattagtttgattgtttccacaa
gttcgattgatcaggTCTGGCTCACTCGAACacatcgaatattacccagg
aatcggcctttcgattgagattcaattgactatcgacaatcgaattgcaa
ttattcgattgcgttcaattgattggCGTTtaattgacaccgtctggccc
TCTGgcagtctaagcttaaactcctatatcaggaatagaaactaggctag
tcttacctctttcaGTCAcagaaatccttgcatttgcatgGGGTGTGCCT
TTGCAACGgtttcaacaattttttccaacccctgCAAGTGAGCTAGAACG
TGTAAGGCAAAATGCACGAAAATTATCAAATCtcaactttaaaatgaaaa
tgacataAAACGAAGACGaatggcattttcattttttttctttagaagat
tctttagcctttttagaaaatttttgtctacaggttaaaatttttatctg
tgcatttttttataatcaagtgaaacatttttccactcTGTGTAAATGGA
ACGGGTTGCAGTGATCGAGTGTAATTGCACGGGGTTTTTTCGTCACTTTG
GTTTTCAACCCATTGCATTTGCCGCATGTCGAACCCTGTAGTTTTTCTAG
AAACCGACCAGGTGAAAGATAATAATTTTTTGACCCgaccgcagactatg
ggttaaTCTATATggtcaggggggggggcacgcagttactctacaagaca
tgatgtgtagtaagtgctttttcaacactttttttcaggaccaccaccct
ttgcagttactacaccttggtagtaactgttttcagaaaagatttccagg
taccacccctgtttttgagtgatatcatcaaaaacatgctcgaaattacc
ctaaattgcaattatttttcaacctaaagccatttttgtgctagattttc
ttttaatttacttggttaacagctgttgagaacattttgatgataattag
ggaaagcataatttcaaagttgggtctgagaaaaatttcaaatttttttt
gtccatttataacaaaaatattttttttaacaaagaattttttcacaaaa
aacatcattttttgtgaaaaatttttaaagttctttctccttttacaatt
gatgaaCTTTCAAAttgtgttaaacttttttcaaataataaatcttTAGG
CGTTGATAATATTCCAACTCTGCTTTGGAAAGATCCCGTCTTTATGGAAA
TGCTTctcgatttttgtaaaaaagaattgaaatataagcacttactacac
caaaagtgctagttttagtgtttggtaccacccccaaacagcagttacta
cactgtgtagtaactgttttcataacttctgaatacagtaccaccacggt
agtaagtgtcatactgtcttgtagtaactgcgtgcccacCCCCCTgatat
ggttcatcataaagaaaattaagttgaccgttcaagctatcaaacgtcgt
ttggtttgATGTTCCCGCGTGTCaatcaagttttgtttgttagtagttga
tacattaatATTTAGGGCTTCATACTGTTtctacataaaagttatctttt
taaagttctatttcaatgatctgaagttatcaaaaaaagcaaaaaaagat
aatttttcaggccggccgcatgaaagctttttttcttcatccacattccg
gaaacactacatttttttattttgcctaaacataattttttttgctgctt
ttttatttgatcataCTGCCATAGCTTAACCTGCATTctcttttttcaga
aattctGTTCCCAAGTATTTATTGGAAAGATACCAAGAGACATGTATGAA
GATGAATTGGTTCCGCTGTTTGAGCCTTATGGTCAAATCTATGATTTACG
TATTATGGTTGATCCTTTTAGTGGACTGAACAAAGGTTATGCATTTGTTA
CATACAGTACCAAAGAAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAAC
CATGAAGTAAGAGGTGGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAAA
TAACAGACTCTTTGTTGGATCTATTCCTAAGACAAAAACCAAACAAGATA
TCATGGAAGAATTTAAGACCAAAGTTGAGGAGTTGACAGATGTTATTATG
TACTTTTCTGCAgaggataaaaataaaaacagaggTTTTGCTTTCCTTGA
CTTTGCCACACACAAAGATGCTGCTCAGGCAagacgaaaattgcaaagtg
ggCGTATCAAGGTTTTTGGACACATTACTCCAGCTGTTGATTGGGCTGAT
TCCATGGATGAACCAAATGATGAAGTCATGTCTAAGGTAAGAGATTAGAT
CATTTTTAGTAATTATCTCCATTTGGTGTTGCAGCCTCATTGAATTATTC
AATTTGATAGCTTTCCTTGCTTTAACTTGGTTGTAATCAGGCTAATTATT
GTATAATGTATAAATAAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATGA
CAGCGAACCACTCAAATTTCTTCCCCATTATACTCCTAATCATCATTTGA
ATTGCTTCCATTTTCCATTTTTGTCACAAAGAACACAATTACAATACAAG
TGCTTTATTTATGCCctgaagttaaaaaaattaatatttaggGTTTACAC
CGCCAAAGTCAgcaatattttattaaaaaatcccAAACTTATTGATGTGA
ATAACCAAGAATATTGaagttttgcggaatttaattttgcgatttAAAGG
GCCAAATTTGCATTAATTAATTCTGCATTAGTTAATTTTGCATTTATTTG
TTCCCTCAAGGCAATACTGATCTGCTATTTTAGTAGTATAGTTCAGTTTA
TACATAGTTTGCGCCCCCTTTTTTTAATGGGGCGGGATGCTAGATTTTTG
GGGGGCCTTTGAAGGGGTTACCAAAATGTGCCTAAATTTTTTGGGtggga
atgtaggggggggtcaaaaaagaaaaggggGTTTGGAAAATCTGGTCAAC
TCAATAATTTACATATAGTCGAAGTCcgttttaaagtaaaattatGTACC
ACCAAAATACAAAAGTGTATAATGttaatcaaaatattatttatatGTAA
TGGTTATCGACAAAAAgagaacgagaaaaatataACCAATATTGTACGAG
TGAAAGTctttgtgttttgtttataCTTCCTGTATTTTGGTGAAATTAAC
ATCAAAACATGCGAAATTGATTAGAATTTTCATTAAACAGTACAAAACAC
TCTTAATTGACCTGACttgacaatttttttgtgatttgagAGGAAAACGA
AAACATTTCTGGGAATAAATTTTGGTAAAAGATACGACAAGAAAGTTCAA
ATTATGACCTCTCActtaccagaccccttttttgAAAACGCtgtcttgta
tttgtacggtacaatatgaaGTACAGGATTTATGTAAGCATTttaagcca
atcagattgcttatatttttcatgttgatgataaATAATGTTATATCTTG
AAATTGTTGCATTTTGGACTCTTTGAtcattttttttggggggggggggc
aagattgcattacaaaagggggatgaaataaacctagggggttcataccc
ctctgcaaactctGTTATAgcaatcatttttcatttctttttaggTGAAA
GTTGTCTATGTCAGACATTTATCTCCAGCCATCGACGAAAACAAATTGAA
TGAACTTTTCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAGG
ATTATGCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATT
GAGGAACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACT
TGCTAAACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGT
TTGGTGCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGA
AGAGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAG
AGGAGGATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTG
GATATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCA
GCCAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGC
AATGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCC
GTGGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAA
AGAGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGA
CTATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCT
CAAGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGT
GATTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCAT
TGCCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACT
ACAGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAA
AAATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGat
ttaaaactctaaaacaagGCATTGctttaaaactgaaaaaccAATGAagc
attgatttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGA
GTCAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaagattttta
aaagcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACA
AAAGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttatttta
taaaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgta
aaaatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatata
tttttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAA
AGTGTTGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaatt
tcgaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCT
TTAatttaaatgttaaaaaaattctttacagGGATTCAAATATATtccaa
atttcatgtcgaagtgattgttttatcaaaaaaaaggaAACTAGAAAAGG
AGATTGTTTTTTACTATTATGTGTCCCTCTGAATTTTATTTATCTTTAAA
AATGGTGACTTAAAATTGAGAATACCTTTNAAGTGAAAAAGATTAAGGAT
TATGCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGA
GGAACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTTG
CTAAACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTT
GGTGCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAG
AGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAG
GAGGATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGA
TATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGC
CAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAA
TGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGT
GGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAG
AGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACT
ATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCA
AGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGA
TTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTG
CCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTAC
AGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAA
ATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGattt
aaaactctaaaacaagGCATTgcttaaaaactgaaaaaccaATGAagcat
tgatttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGT
CAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaa
agcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAA
AGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttattttata
aaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaa
aatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatatt
tttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAG
TGTTGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaatttc
gaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTT
AatttaaatgttaaaaaaattctttacagGGATTCAAATATATtccaaat
ttcatgtcgaagtgattgttttatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047740-exon-scaffold_136-1491911889:8315..8993 | TCONS_00047740-exon-scaffold_136-1491911889:8315..8993 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1510915933:8315..8993 | TCONS_00047740-exon-scaffold_136-1510915933:8315..8993 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1575043694:8315..8993 | TCONS_00047740-exon-scaffold_136-1575043694:8315..8993 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1491911889:17864..18400 | TCONS_00047740-exon-scaffold_136-1491911889:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1510915933:17864..18400 | TCONS_00047740-exon-scaffold_136-1510915933:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1575043694:17864..18400 | TCONS_00047740-exon-scaffold_136-1575043694:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1491911889:19709..20381 | TCONS_00047740-exon-scaffold_136-1491911889:19709..20381 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1510915933:19709..20381 | TCONS_00047740-exon-scaffold_136-1510915933:19709..20381 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1575043694:19709..20381 | TCONS_00047740-exon-scaffold_136-1575043694:19709..20381 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1491911889:21828..22793 | TCONS_00047740-exon-scaffold_136-1491911889:21828..22793 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1510915933:21828..22793 | TCONS_00047740-exon-scaffold_136-1510915933:21828..22793 | Clytia hemisphaerica | exon |
| TCONS_00047740-exon-scaffold_136-1575043694:21828..22793 | TCONS_00047740-exon-scaffold_136-1575043694:21828..22793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:8315..22793 + |
Blast
BLAST of TCONS_00047740 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 437.187 bits (1123), Expect = 1.839e-140 Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 2
Query: 206 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1465
HS + LL G+ +A KLDEI+ GL+ +LD+RA+EALKEF E+ AL VL QF SDL+HVQNKSAFLCGVMKTYR + K ++ A D KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP + +++F+GKIPRD++EDELVPLFE G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF E LTDVI+Y +DK KNRGF FL++ HK AAQARR+L SG++KV+G++ V+WAD +++P+ EVM+KVKV++VR+L+ + E L + F Q+G +E+VKK+KDYAFI+F RD A++A+EE++ ++L+ I + AKP K +R+ Q
Sbjct: 23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
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