|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047768 ID=TCONS_00047768|Name=TCONS_00047768|organism=Clytia hemisphaerica|type=transcript|length=3817bpRun BLAST on NCBI transcript from alignment at scaffold_136:100423..124026- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047768 ID=TCONS_00047768|Name=TCONS_00047768|organism=Clytia hemisphaerica|type=transcript|length=23604bp|location=Sequence derived from alignment at scaffold_136:100423..124026- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047768 vs. Swiss-Prot (Human)
Match: CC186 (Coiled-coil domain-containing protein 186 OS=Homo sapiens GN=CCDC186 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.905e-31 Identity = 136/466 (29.18%), Postives = 249/466 (53.43%), Query Frame = 2
Query: 524 YQKTIDRLENDIKQQKALTSESNEKLTAHDAAAKRAIGVLQKEMGAKVEQVTKLYQDTMKEKDGHLIKISKLEALNYELKQNNTTQSKKILDQQNEIETTKSSLKSKTDEIKSIFSNSESHEKEFAKLHKKIETQQEEIKNQETKVNWAQNKLTAELEAHKETKKLISQYQSRIQQAKEEGDMIRKDCQQMIERYQGDEEIKSVRLDKELEECRTKLKEHDEESSKQLEINKEQELAISIIKEDNSKLADELCDKKNQFLVLEGRNSSLLLQLNEKTKDYAEM----ETKLDEMKEKVKTFEDVQATILEYETTIKGLQMVETTLKQQLHDAELEAKEQSERHQEILQYSQSLTENNVSSKSTVAELQTKLDAVMLEKAQSSKDFNETQTSIGKLEKEKKQIQEALDVANNTIKE----KDTQVQKVNDTLEEAKDEXXXXXXXXXXXXXXXQRQLQQTTKKIEQM 1897
+ TI +LE+ I++ S ++L A D AK A+ L KEM ++EQ K ++ +EK+ ++K + E + +L++ T KK+ D E+E + +K + E + E+ E E +L ++I+ +E+I + KV WAQNKL AE+++HKETK + + +++ QAKEE D IRK+CQ MI+ YQ EEIKS LD +L + +L++ +E S QLE++ + + +K + DEL + + LE L+ ++ Y E+ + ++ + +KVKT + +Q + + I+ L+ +L ++D + + + +R E+L +++ LT N +S LQ++ D V ++Q + + + LE + +E T++ + T+V+ ++ +EE KDEL ++K+A+ +KDL +QLQQ +K++Q+
Sbjct: 247 HMNTIKQLESRIEELNKEVKASRDQLIAQDVTAKNAVQQLHKEMAQRMEQANKKCEEARQEKEAMVMKYVRGEKESLDLRKEKETLEKKLRDANKELEKNTNKIKQLSQEKGRLHQLYETKEGETTRLIREIDKLKEDINSHVIKVKWAQNKLKAEMDSHKETKDKLKETTTKLTQAKEEADQIRKNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKVKCLEDER----LRTEDELSKYKEIINRQKAEIQNLLDKVKTADQLQEQLQRGKQEIENLKEEVESLNSLINDLQKDIEGSRKRESELLLFTERLTSKNAQLQSESNSLQSQFDKVSCSESQLQSQCEQMKQTNINLESRLLKEEELRKEEVQTLQAELACRQTEVKALSTQVEELKDELVTQRRKHASSIKDLTKQLQQARRKLDQV 708 HSP 2 Score: 92.8189 bits (229), Expect = 6.643e-19 Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 2
Query: 2042 VSQHGGIMASVYSGKTTDKGMTLDLSLTINRKLQAVLEDTILKNITLKENINTLGAEIAKL 2224
+S+ GGIMAS+Y+ D G+TL+LSL INRKLQAVLEDT+LKNITLKEN+ TLG EI +L
Sbjct: 824 LSRRGGIMASLYTSHPADNGLTLELSLEINRKLQAVLEDTLLKNITLKENLQTLGTEIERL 884 The following BLAST results are available for this feature:
BLAST of TCONS_00047768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.