|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047771 ID=TCONS_00047771|Name=TCONS_00047771|organism=Clytia hemisphaerica|type=transcript|length=6630bpRun BLAST on NCBI transcript from alignment at scaffold_136:134670..149732- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047771 ID=TCONS_00047771|Name=TCONS_00047771|organism=Clytia hemisphaerica|type=transcript|length=15063bp|location=Sequence derived from alignment at scaffold_136:134670..149732- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047771 vs. Swiss-Prot (Human)
Match: BIG3 (Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Homo sapiens GN=ARFGEF3 PE=1 SV=3) HSP 1 Score: 609.372 bits (1570), Expect = 3.136e-180 Identity = 421/1334 (31.56%), Postives = 658/1334 (49.33%), Query Frame = 1
Query: 1939 EELEKEGARNFARCLLGILPSVLKATEPSAADELLQQFASDVCEAVTCMTLKRKNVPNFGTVRTLDMKTAEENGKETNDPSLNAECVYKAVYEALKLSYELNQLGYYEKSGATPHVSQNSFIQSVVDFGFPVRLSRTWLSEVYRLITTYDILSKAGYHPESSDTNRALIGILSEKIYTHHPNRIKETDEIGTSGKFRDPITAGKR------EGQKFARRLLLSTWDQVLDTLAVPLSSTTQISSDSAGMKFLINNTNVNNRAELQSKQMLERDLVCLSLDGFRRAARLCCDLDIQSRCDIILSRLSEASC------------------GYFINEKKQLSKNGIPPSVKLHAAHVLSMDALLAAGLELGSRAPQAWNHVFRCCMYISNLEHASFDSPTGGSSPNYPPAPPSGAHPHLQLQLQKSNILSPDYYSTDEDSDMS--PDSTNSFPDDRNLSNSRANTSLTLNG-ILPAEDACRAVFALSSAVDNLFDMAATTLPLKAFREFLASLVEASHDQLFSDQAKLSERPLDK-AAIKETLISMNTLHLYHICDVMLRCARNNTRPLLHVMEAWSIISSHLVEAAYSKEKHISKVALTSIHDILSELLKRRNELPHFWFYDALFKPFETLMSADGCEDDIHDQILYTLYELVEGFGPSIKSGWRSLFNAVSHAQIDNRSNLNDFNDGE----QRRKLVFNMIEHFVQLKTTNXXXXXXXXXXLCLLKFIRGGREFTNTSEDSFDFPPCLDDPRSDTDSQSSEPSPEHDLCEPSLDILLQISKRLSTIYLQPSSVIF-HGSYSILLVNIAESHDKVWDDNWSCGSSTTTSPDAESKPAILSTANSIVAIDDTGVLRIWFLILEGLTSSVANSPKRYQPMIIQSFFEILNSLTAVPGPHFSMFAISNLLLPMLQAWVERGARKKTYWDYTLNNFKHACGLATQLVADEIGHFLEVEGAVE-CVPLMLKQLLDLFHDCVSQHIEVIARLGCSCLRHLLLSAGSQFTEELWHILCLGIKQIVDSTLSQTRQLIDCFVPNSKSVTGDNGFQVKIVARRDVTPTES--LRALQLAEQVFLLESQLTVTSPRSESDLDEDDNRSYIFLISPMDDKKKDEKIRVPFRSLTISLLSNQILIQMLGSILLESADSAVHGSIISTITEAGLIKRIN-EEKSLPGLLNYLSPLNLNILFGCLLDTHDVAHEFNTRPGLRSLTQKLGRFHVPANLLRTSITSFAFYLNTLFQISKYDGEHFSISNTKRIL----------------TGEKVLLEV--VSPESPHKSSINPAKLELL--KNSENIDWV--IRRLHEACNQISTMYHKLH 5763
+E ++ AR F + L G+LP +L + D LQ FAS C + + P F +L + +NA+ +Y A + AL L+ +L+ YY K F++ V G + S+ W+ E+Y + ++L +AGY D + LI +L++ I + I ++ S P +R G FAR +L+ W ++DTL+ PL T +++ S G+ F++ + + + ERD +C+SLDG R+AARL C L + + C L++++ ASC + +++L + G V LH AHVL M+A+L+ GLE+GS P W HVFR C Y+ LEH F G S P + P A L SP +S ++ +S P D SR S G ++ A + V LS+ D LF+ A L L A FL L +AS QLF + L +K T + LHL+ + + MLR R+ RPLLHVM WS+++ HLVEAA KE+H+S+ A++ IHDIL+E+L NE PHF F +ALF+PFE +M + C++D+ DQ++ ++ ELVE I+SGWR LF+A+ N+S + ++ G+ + + VF++ E F+ VF+++ S ++CL+KF++G E D + D + +P DLC P+LD L + S+ L+ IY P IF G + L + E S ++ ES +LS + DDTG++ +W ++LE LT++V+N P+++QP + FE+L +T PGP F ++A+ +LLLP++ W+ R + +YWD NFKHA GL+ +LV + I FL + E + MLK L +L CV++ E I+R+GCSC+R++L++AG FTEE+W + C ++ +TL + L+ CF ++S +G+ G QV++ A E+ R +A+QVF+L++Q SP++ ++ D + I + P + K V FR + +SLLS+Q+L+Q L ILLE V G G K I E L G L Y+S NL ++F LLD++ A EF+T PGL+ L +K+ ANL R S SF Y + L + E + K++L E + E VSP + A++ LL + N DWV ++RLH+ C ++ Y ++H
Sbjct: 666 QEADQHSARLFIQSLEGLLPRLLSLSNVEEVDTALQNFASTFCSGMM-------HSPGFDGNSSLSFQML-----------MNADSLYTAAHCALLLNLKLSHGDYYRKRPTLAPGVMKDFMKQVQTSGVLMVFSQAWIEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTD-IDGLESSAIG--GQLMASAATESPFAQSRRIDDSTVAGVAFARYILVGCWKNLIDTLSTPL--TGRMAGSSKGLAFILGAEGIKEQNQK------ERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAITQVKLKVEQKLEQIGKVQGVWLHTAHVLCMEAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHNHFSD--GASQPPLTISQPQKATGSAGLLGDPECEGSPPEHSPEQGRSLSTAPVVQPLSIQDLVREGSRGRASDFRGGSLMSGSSAAKVVLTLSTQADRLFEDATDKLNLMALGGFLYQLKKASQSQLFHSVTDTVDYSLAMPGEVKSTQDRKSALHLFRLGNAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWNEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHGGNKSEMKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEV---------------DCKEIGDCAPAPGAPSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLAGLPRRLQE-------------QSASSEDGIES---VLSDFD-----DDTGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSVWLRRSHKDHSYWDMASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTESFSGE-GCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQ---CSPKTPNNFDHAQSCQLIIELPPDEKPNGHTKKSVSFREIVVSLLSHQVLLQNLYDILLE---EFVKGP------SPGEEKTIQVPEAKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEDDERSTDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARMPLLSVQPVSNADWVWLVKRLHKLCMELCNNYIQMH 1919 HSP 2 Score: 172.17 bits (435), Expect = 1.599e-42 Identity = 94/209 (44.98%), Postives = 138/209 (66.03%), Query Frame = 3
Query: 195 MQEDKEFVNLIWQVLCPALIQLLGSPIND----------INTRNRQIGLTNGFPDDGRGARGMSTNKSLNPVMARTIYVIAGELVRLVGALNSLRPTLESLFHRIVLYSQPQHRIEALKVIQEILGSPQRIFDLAGPTIDDREPGTPESPTDQRKTDLDLFRLIMDGIQESSNQSDPXXXXXXXXXXXXLLGTLEDLSNGRGLSDENIE 791
M + F +LIW+ LCPALI +LG+PI+D +T + G D GRG+ T +L+ +ARTIY IA ELVRLVG+++S++P L+SL+HR++LY PQHR+EA+K+++EILGSPQR+ DLAGP+ + E + + +RK+ LDL +LIMDG+ E+ + A+VSCV LLG L++LS G+GLS+ ++
Sbjct: 246 MHLHRRFTDLIWKNLCPALIVILGNPIHDKTITSAHTSSTSTSLESDSASPGVSDHGRGSGCSCTAPALSGPVARTIYYIAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQRLCDLAGPSSTESE--SRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLSEGQVQ 452 The following BLAST results are available for this feature:
BLAST of TCONS_00047771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.