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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047775 ID=TCONS_00047775|Name=TCONS_00047775|organism=Clytia hemisphaerica|type=transcript|length=1018bp
GTCAACGAGACTTTGCTGAAGCCTTTGCTGCGATTTCAAGAGAAATAGAT
TTATGCTGTGATGCTGTTGGATATCGTACCATATGGCACAGACTATCAGT
CAAGTATGGTTTCCCAATTCATGGGTGCTGTGATGGTTTCAGCAGGAAGA
TTTTGTGGCTACGTGTTATCAACAGTAACAACAATCCAAAAATAATTTGC
AACCTTTTTTTGAAAACCGTAGAAGAAATTGGTGTGTTTCCCAGATGTGT
GCGATCGGACTGCGGTACAGAGAATGGTTATTTAGCTGCAGCACAATGCT
ACTTCAACCGTCAAAGTGATCATCGAGCTCATTTGTATGGATCTTCAAAT
CACAATCAGCGCATAGAAAGTTGGTGGTCACAATTTCGACGACTAAATAC
CGAGTATTTAATAAATTTTTTTCAAGATATGGTGGACGAAGGTATCTATA
ATACAGGCGATTATCTTCACCGGGCCTGTGCGTTTTATTGTTTTGCTCCG
TTGATTCAACACGAGCTTGATTCTTGTATGGAACAGTGGAATTCACATTT
CATTAGGCACTCTCCTAATGTAGAAGCTAGTGGTCGCCCTGATGTGCTAT
ATTCCTTCCCGCCGAATGGTTTCAGAGAAAATTGTACCCAGTGTAATCCT
GCCGATATTGCTACTGTTCGAGGATATTCAGTTAACTTGGAAAATGACAT
GGACCAAAATAATTTTGACTGGAACAGCGTCGATTTTTTCAACTACCTGT
GTGATTTCTTGATACTACCCGAGTTCTCTAACCTTCAAAttgcaaaacaa
aactttaTTCGCATGTTGCCACATTGTGTTTTATAAGTAAGCAAAAGTAA
CTGGAAAGTGATGCTGCTAAATCTTGTGTGGGCAAAAAATGGGACTATTC
GAATACACTGGCTTTAGTTACGGTTTTTAATATCAATATGTAGAAATCGA
CTAAATTACATGATCCAAATGTGTTTGAAGTTTTTCAAGTTTAAATTGAT
TGACGGGTTTTTTAATTG Run BLAST on NCBI protein sequence of TCONS_00047775-protein >TCONS_00047775-protein ID=TCONS_00047775-protein|Name=TCONS_00047775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
QRDFAEAFAAISREIDLCCDAVGYRTIWHRLSVKYGFPIHGCCDGFSRKI
LWLRVINSNNNPKIICNLFLKTVEEIGVFPRCVRSDCGTENGYLAAAQCY
FNRQSDHRAHLYGSSNHNQRIESWWSQFRRLNTEYLINFFQDMVDEGIYN
TGDYLHRACAFYCFAPLIQHELDSCMEQWNSHFIRHSPNVEASGRPDVLY
SFPPNGFRENCTQCNPADIATVRGYSVNLENDMDQNNFDWNSVDFFNYLC
DFLILPEFSNLQIAKQNFIRMLPHCVL Run BLAST on NCBI transcript from alignment at scaffold_136:210724..212030- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047775 ID=TCONS_00047775|Name=TCONS_00047775|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at scaffold_136:210724..212030- (Clytia hemisphaerica)
GTCAACGAGACTTTGCTGAAGCCTTTGCTGCGATTTCAAGAGAAATAGAT
TTATGCTGTGATGCTGTTGGATATCGTACCATATGGCACAGACTATCAGT
CAAGTATGGAATTAGAATTTCTCGAAATTTTGTGATGGAAGCAATGAAGT
TTCTTGACCCGGCTGGGGCAGCACATAGAAGATCTCGACGCCTGCGGAGA
AGAAGCTATAGATCAGATGGACCAAACTACACGTGGCATGTGGATGGCTA
TGACAAACTTAAAAGATATTTTTGTCCCTTAGTTTTTGAATATCTCAAGC
AACGCAACATGTCATCAATCTCGATATCATCCTTAAATCCATAATTTAGT
AAAATTTCTATGTTAGAAATCTTAAATTTTCTAATTTTTCAGGTATGGTT
TCCCAATTCATGGGTGCTGTGATGGTTTCAGCAGGAAGATTTTGTGGCTA
CGTGTTATCAACAGTAACAACAATCCAAAAATAATTTGCAACCTTTTTTT
GAAAACCGTAGAAGAAATTGGTGTGTTTCCCAGATGTGTGCGATCGGACT
GCGGTACAGAGAATGGTTATTTAGCTGCAGCACAATGCTACTTCAACCGT
CAAAGTGATCATCGAGCTCATTTGTATGGATCTTCAAATCACAATCAGCG
CATAGAAAGTTGGTGGTCACAATTTCGACGACTAAATACCGAGTATTTAA
TAAATTTTTTTCAAGATATGGTGGACGAAGGTATCTATAATACAGGCGAT
TATCTTCACCGGGCCTGTGCGTTTTATTGTTTTGCTCCGTTGATTCAACA
CGAGCTTGATTCTTGTATGGAACAGTGGAATTCACATTTCATTAGGCACT
CTCCTAATGTAGAAGCTAGTGGTCGCCCTGATGTGCTATATTCCTTCCCG
CCGAATGGTTTCAGAGAAAATTGTACCCAGTGTAATCCTGCCGATATTGC
TACTGTTCGAGGATATTCAGTTAACTTGGAAAATGACATGGACCAAAATA
ATTTTGACTGGAACAGCGTCGATTTTTTCAACTACCTGTGTGATTTCTTG
ATACTACCCGAGTTCTCTAACCTTCAAATTGCAAAACAAAACTTTATTCG
CATGTTGCCACATTGTGTTTTATAAGTAAGCAAAAGTAACTGGAAAGTGA
TGCTGCTAAATCTTGTGTGGGCAAAAAATGGGACTATTCGAATACACTGG
CTTTAGTTACGGTTTTTAATATCAATATGTAGAAATCGACTAAATTACAT
GATCCAAATGTGTTTGAAGTTTTTCAAGTTTAAATTGATTGACGGGTTTT
TTAATTG Coding sequence (CDS) from alignment at scaffold_136:210724..212030- >TCONS_00047775 ID=TCONS_00047775|Name=TCONS_00047775|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_136:210724..212030- (Clytia hemisphaerica)
GTATGGTTTCCCAATTCATGGGTGCTGTGATGGTTTCAGCAGGAAGATTT
TGTGGCTACGTGTTATCAACAGTAACAACAATCCAAAAATAATTTGCAAC
CTTTTTTTGAAAACCGTAGAAGAAATTGGTGTGTTTCCCAGATGTGTGCG
ATCGGACTGCGGTACAGAGAATGGTTATTTAGCTGCAGCACAATGCTACT
TCAACCGTCAAAGTGATCATCGAGCTCATTTGTATGGATCTTCAAATCAC
AATCAGCGCATAGAAAGTTGGTGGTCACAATTTCGACGACTAAATACCGA
GTATTTAATAAATTTTTTTCAAGATATGGTGGACGAAGGTATCTATAATA
CAGGCGATTATCTTCACCGGGCCTGTGCGTTTTATTGTTTTGCTCCGTTG
ATTCAACACGAGCTTGATTCTTGTATGGAACAGTGGAATTCACATTTCAT
TAGGCACTCTCCTAATGTAGAAGCTAGTGGTCGCCCTGATGTGCTATATT
CCTTCCCGCCGAATGGTTTCAGAGAAAATTGTACCCAGTGTAATCCTGCC
GATATTGCTACTGTTCGAGGATATTCAGTTAACTTGGAAAATGACATGGA
CCAAAATAATTTTGACTGGAACAGCGTCGATTTTTTCAACTACCTGTGTG
ATTTCTTGATACTACCCGAGTTCTCTAACCTTCAAATTGCAAAACAAAAC
TTTATTCGCATGTTGCCACATTGTGTTTTATAACAACGAGACTTTGCTGA
AGCCTTTGCTGCGATTTCAAGAGAAATAGATTTATGCTGTGATGCTGTTG
GATATCGTACCATATGGCACAGACTATCAGTCAAGTATGGTTTCCCAATT
CATGGGTGCTGTGATGGTTTCAGCAGGAAGATTTTGTGGCTACGTGTTAT
CAACAGTAACAACAATCCAAAAATAATTTGCAACCTTTTTTTGAAAACCG
TAGAAGAAATTGGTGTGTTTCCCAGATGTGTGCGATCGGACTGCGGTACA
GAGAATGGTTATTTAGCTGCAGCACAATGCTACTTCAACCGTCAAAGTGA
TCATCGAGCTCATTTGTATGGATCTTCAAATCACAATCAGCGCATAGAAA
GTTGGTGGTCACAATTTCGACGACTAAATACCGAGTATTTAATAAATTTT
TTTCAAGATATGGTGGACGAAGGTATCTATAATACAGGCGATTATCTTCA
CCGGGCCTGTGCGTTTTATTGTTTTGCTCCGTTGATTCAACACGAGCTTG
ATTCTTGTATGGAACAGTGGAATTCACATTTCATTAGGCACTCTCCTAAT
GTAGAAGCTAGTGGTCGCCCTGATGTGCTATATTCCTTCCCGCCGAATGG
TTTCAGAGAAAATTGTACCCAGTGTAATCCTGCCGATATTGCTACTGTTC
GAGGATATTCAGTTAACTTGGAAAATGACATGGACCAAAATAATTTTGAC
TGGAACAGCGTCGATTTTTTCAACTACCTGTGTGATTTCTTGATACTACC
CGAGTTCTCTAACCTTCAAATTGCAAAACAAAACTTTATTCGCATGTTGC
CACATTGTGTTTTATAACAACGAGACTTTGCTGAAGCCTTTGCTGCGATT
TCAAGAGAAATAGATTTATGCTGTGATGCTGTTGGATATCGTACCATATG
GCACAGACTATCAGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047775-exon-scaffold_136-1575043694:211928..212030 | TCONS_00047775-exon-scaffold_136-1575043694:211928..212030 | Clytia hemisphaerica | exon |
| TCONS_00047775-exon-scaffold_136-1575043694:210724..211638 | TCONS_00047775-exon-scaffold_136-1575043694:210724..211638 | Clytia hemisphaerica | exon |
| TCONS_00047775-exon-scaffold_136-1510915933:211928..212030 | TCONS_00047775-exon-scaffold_136-1510915933:211928..212030 | Clytia hemisphaerica | exon |
| TCONS_00047775-exon-scaffold_136-1510915933:210724..211638 | TCONS_00047775-exon-scaffold_136-1510915933:210724..211638 | Clytia hemisphaerica | exon |
| TCONS_00047775-exon-scaffold_136-1491911889:211928..212030 | TCONS_00047775-exon-scaffold_136-1491911889:211928..212030 | Clytia hemisphaerica | exon |
| TCONS_00047775-exon-scaffold_136-1491911889:210724..211638 | TCONS_00047775-exon-scaffold_136-1491911889:210724..211638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:210724..212030 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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