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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047777 ID=TCONS_00047777|Name=TCONS_00047777|organism=Clytia hemisphaerica|type=transcript|length=588bp
AAATATTTTTCGACTGTTTTTATTTATCAAAACTCAAGATTTACTAAGGC
AAATTTCTGAGGAAGTAGGACAAGAGAGGTATTTCCAAACTTTGTAAACC
CTCACTTTATGGGTATTTCTGTTAATTTAACTCACCCAGtcattctttta
taaaaaatgagttgggtaaaaagttaaaacattCAGTAGAAATTGTTTAG
ttataaatattgaaatatagCGTAAAAAAATAATGCCTTTAAAcggctgg
tttattttgaattcaaaattgtaTTTCTCTATTGATAGGCTCTACAGTTT
CTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCCAACTCTCAGAAT
GATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCATGCTTCAATGGA
TTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAACAAATCATGTGA
ACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATTGAGGATTCAACA
TATTCTACAGTTTCTCACAACACTTCTTTGGTTGCAAGCTCTTCGAATGA
CCAGCTTCTTTCTTCGATTGCACCAAACTCAATTCAAG Run BLAST on NCBI transcript from alignment at scaffold_136:215717..218929- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047777 ID=TCONS_00047777|Name=TCONS_00047777|organism=Clytia hemisphaerica|type=transcript|length=3213bp|location=Sequence derived from alignment at scaffold_136:215717..218929- (Clytia hemisphaerica)
AAATATTTTTCGACTGTTTTTATTTATCAAAACTCAAGATTTACTAAGGC
AAATTTCTGAGGAAGTAGGACAAGAGAGGTATTTCCAAACTTTGTAAACC
CTCACTTTATGGGTATTTCTGTTAATTTAACTCACCCAGTCATTCTTTTA
TAAAAAATGAGTTGGGTAAAAAGTTAAAACATTCAGTAGAAATTGTTTAG
TTATAAATATTGAAATATAGCGTAAAAAAATAATGCCTTTAAACGGCTGG
TTTATTTTGAATTCAAAATTGTATTTCTCTATTGATAGGCTCTACAGTTT
CTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCCAACTCTCAGAAT
GATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCATGGTAAGTTTGT
TGATAAGTGAAAATTTTTAATTAAAGCAGGTTTGTGAAAATTTATCATTC
AAGCATATTAAAGAATGTTCTCCTAGTATATTCCTTTCTTTTGACACTTT
GTATTGATGAAATGTATTTTGTTATTGACAGCTTCAATGGATTCTGCCGC
CGCTCGCAACACCTCTTTTGAATATTCAACAAATCATGTGAACAATCAAC
TCAGTTCTTTGATTGCACCTGCTTCAATTGAGGGTATGTTTTTAATTGTG
TTGAGTGTTTATACCCCCCCCCCCCTTAAAAGTGAGGTTACACCCCAAAA
AAGATGGAGGCTAAATCTGTTTCAAATATTTCGGGGGGGGGGGCTGGCTA
GAGTTTACCATACTTTTGACTTTCAAGTATAATCGGTCTGTCTCTTTCTG
TCGTTTTGTATTTTCTCTTTTTTACTCTTTTTTTTTGCGAGAATATTTTA
CTGATATGCTTCAGGAAGAAGTTTAAAAGTAAAAGACTGAGGACTGAAAT
TCAATGGGGATTGATATACCCACGTTTTTTATGACTGGGTATTCAAATTC
CATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAGTGAGGATTTATT
TATTTAATCATTTTCAGCGGAGATAGAAACTTCCACTGGAGATGATATTT
CCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAACTTAATTTCTAAT
GGAGATGAAAGTGCACTGTATTCTTGTGATATTTCAGTGTTTTCAGGGTG
ATAATAGTACAGTTAAAGGTTCGTATGAGTGATTACTTTTAGAAGGATCG
TTTAATGATTTTTCTAGTACTGATCACTCATAAAGAAGAACAAACACCCA
GGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAACTCGAATCGGGCAAG
CAATTAATAAAGAGTTAATTAGTTAAAAAATTATTTGCTTTTACAGGCTT
TAATAATTCATTTGAGGAAAGTATCTCATATAATTTAAAAAGAGAGAATT
GACCATATTACTTGGAGGTATATTGATCATTTGTGGTTTTTTCTTACGCA
CGCGCACAATAGCACGTCAAAAAAACACTTTTCAGCCTGTACTCGTCAAT
TGACAATGGCGCGCACAGGCCCCGACAAAGTCAAATCTTTTCGACCAGTT
GCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTATGTATC
AGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACACCTAGAATCG
AGTCTGACAAAGACGCGCCTTCGTTAATCTCAGAATGTACGTATGTACAT
CAGATTATATGAATTAACTGTAACAAAAATCAACTCCTTAAACTCGGAAG
AAAACTGATAATTATCATGGCGACTAAGTAAAGCTTTTCCCAATATCACT
TTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAAGCCTTTGATTT
CCATCTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACACGTTACTATT
GTCAATTTATTATTTGTTCTTGGTAGATTCAACATATTCTACAGTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT
TCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAGTGAGGATTTA
TTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCATTGGAGATGATAT
TTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAGCTTAATTTCTA
ATGGAGATGAAAGTGCACAGCCACTGTATTCTTGTGAAATTTCAGTGTTT
TCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGATTACTTTTAG
AAGGATCGTTTAATGATTTTTCTAGTACTGATCACTCATAAAGAAGAACA
AACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAACTCGAAT
CGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATTATTTGCTTTT
ACAGGCTTTAANGAATCGAATCGAATCGGACAAGCAATTAATAAAGAGTT
AATTAGTTAAAAAATAGCTTAACTATTTTCTTTTACAGGCTTTGATAATT
TATTTGAGGAAAGTATCTCATATAATTTAAAAAGAGAGCATTGACCATAT
TACTTGGAGGTATATTGATCATTTGTGATTTTTTCTTACGCACGCGCACA
ATAGCACGTCAAAAAAACACTTTTTAGCCTGTACTCGTCAATTGATAATG
GCGCACACAGGCCCCGACAAAGTCAAATCTTTTCGAACAGTTGCTTTTAA
AATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTATGTATCAGTCAACA
AAGTTCGAATACAGTAGTTACTGCTTGACACACCTAGAATCGAGTCTGAC
AAAGACGCGCCTTCATTAATCTCAGAATGTACGTATGTACATCAGATTAT
ATGAATTAACTGTAACAAAAATCAACTCCTTAAGCTCGGAAGAAAACTGA
TAATTATTATGGGGACTAAGTAAAGCTTTTCCCAATATCACTTTTTGTAA
AAAAATATAGCCTTGACTTCCACAAAAAAAGCCTTTGATTTCCATTTTAG
ATAATGAAGTTGCGCGCAGTGCATTTTAACATGTTACTATTGTCAATTTA
TTATTTGTTCTTGGTAGATTCAACATATTCTACAGTTTCTCACAACACTT
CTTTGGTTGCAAGCTCTTCGAATGACCAGCTTCTTTCTTCGATTGCACCA
AACTCAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047777-exon-scaffold_136-1575043694:218540..218929 | TCONS_00047777-exon-scaffold_136-1575043694:218540..218929 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1575043694:218297..218398 | TCONS_00047777-exon-scaffold_136-1575043694:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1575043694:215717..215812 | TCONS_00047777-exon-scaffold_136-1575043694:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1510915933:218540..218929 | TCONS_00047777-exon-scaffold_136-1510915933:218540..218929 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1510915933:218297..218398 | TCONS_00047777-exon-scaffold_136-1510915933:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1510915933:215717..215812 | TCONS_00047777-exon-scaffold_136-1510915933:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1491911889:218540..218929 | TCONS_00047777-exon-scaffold_136-1491911889:218540..218929 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1491911889:218297..218398 | TCONS_00047777-exon-scaffold_136-1491911889:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047777-exon-scaffold_136-1491911889:215717..215812 | TCONS_00047777-exon-scaffold_136-1491911889:215717..215812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:215717..218929 - |
Blast
The following BLAST results are available for this feature:
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