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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047780 ID=TCONS_00047780|Name=TCONS_00047780|organism=Clytia hemisphaerica|type=transcript|length=894bp
atttagttAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCAT
CTAATCAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAAT
ACTGGTGCCAGCACAAGTACATCAAAtcaaggaaaaaaaacattccagCA
ATTCTTAGAAGAGAAGAAGACTGATCGTATATGcaagtccaaaaaacaaa
agatttctaAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGG
CAACAGTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACT
TGAATGTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTG
ATAAACAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGAT
GTAAAACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGG
AACTAACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGA
AATACAAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAA
GACGATGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGCTCTA
CAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCCAACTCT
CAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCATGCTTC
AATGGATTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAACAAATC
ATGTGAACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATTGAGGAT
TCAACATATTCTACAGTTTCTCACAACACTTCTTTGGTTGCAAGCTCTTC
GAATGACCAGCTTCTTTCTTCGATTGCACCAAACTCAATTCAAG Run BLAST on NCBI transcript from alignment at scaffold_136:215717..220439- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047780 ID=TCONS_00047780|Name=TCONS_00047780|organism=Clytia hemisphaerica|type=transcript|length=4723bp|location=Sequence derived from alignment at scaffold_136:215717..220439- (Clytia hemisphaerica)
ATTTAGTTAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCAT
CTAATCAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAAT
ACTGGTGCCAGCACAAGTACATCAAATCAAGGAAAAAAAACATTCCAGCA
ATTCTTAGAAGAGAAGAAGACTGATCGTATATGCAAGTCCAAAAAACAAA
AGATTTCTAAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGG
CAACAGTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACT
TGAATGTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTG
ATAAACAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGAT
GTAAAACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGG
AACTAACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGA
AATACAAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAA
GACGATGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGTAAGC
AATCAATATCTTTTGGTTTACCTTTCAGAAACAATTTTTGGCAGAATTTA
AATTTTTTTTCTATTCAGGAAAAGTTTTGAGGAAATGTAAATAAAACATT
ACAAATTTTGAAGATTGTTGCAGGAGAAAGATTCTACCAGGATTTCTTTC
AAAAATAATTCAAAATTGGGCTTAAAAGTCAAAAATGCTAACAAAAATTT
GACAAAGTTTGACGTCTTTGAGATTGTGACCATATTTTTTCCATGAGGAA
ATTAAGACACCAAATTTGACCCTGGTCTACAGTAGATTCTGTCTTCTTGT
GAGCTGCTTTAAAGTGTACCACTTACTTAGCAACCCTGTCAAACCAGTAA
GATCCCACCCGCCTCGTCCTTATTAATATGGGTGGTGCCAAAGGCTAAAA
GAAGATATCTTAAAGCTATATACAATTTTCTTTCTAGTACTGTATCACAG
TAAATTATTAATTCAATGCGTTTTTTTTAGTGACGAGAATCCAGTGAATC
CATTACCTTTCAATATCTTTGATACGGGAGCAGCAATATCATTCAACAAT
AATAGTATTTTTGCATGATAAAAATCATTAATATTGTGTTTTTATTGTGA
TTTATGAAATGTTTTATGAATTGGCTTCTCACAAAAATGACATTTTGGCT
TCATTTGATTATTCCTGATAATTCATAACATTTTTTCAAATCATTACACT
ACTATACAGTTATCTAAGAATTCCAATCTTAATAACTCAATATTTATTGA
ATTTCAAAATTCTTTTAGGTCTGTGTAATTTAAGATGCACGATTCATGCA
TAATTCATGCTAATCATTTTAATGCATGCATATTATAGATAATGTTTAAG
TGGGTTCTTTTGGTTTGCTTAAAAGTTAAAAAATATAACATTCGTATTTT
CGTCTGATCTAAATATTTTTCGACTGTTTTTATTTATCAAAACTCAAGAT
TTACTAAGGCAAATTTCTGAGGAAGTAGGACAAGAGAGGTATTTCCAAAC
TTTGTAAACCCTCACTTTATGGGTATTTCTGTTAATTTAACTCACCCAGT
CATTCTTTTATAAAAAATGAGTTGGGTAAAAAGTTAAAACATTCAGTAGA
AATTGTTTAGTTATAAATATTGAAATATAGCGTAAAAAAATAATGCCTTT
AAACGGCTGGTTTATTTTGAATTCAAAATTGTATTTCTCTATTGATAGGC
TCTACAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCCAA
CTCTCAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCATG
GTAAGTTTGTTGATAAGTGAAAATTTTTAATTAAAGCAGGTTTGTGAAAA
TTTATCATTCAAGCATATTAAAGAATGTTCTCCTAGTATATTCCTTTCTT
TTGACACTTTGTATTGATGAAATGTATTTTGTTATTGACAGCTTCAATGG
ATTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAACAAATCATGTG
AACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATTGAGGGTATGTT
TTTAATTGTGTTGAGTGTTTATACCCCCCCCCCCCTTAAAAGTGAGGTTA
CACCCCAAAAAAGATGGAGGCTAAATCTGTTTCAAATATTTCGGGGGGGG
GGGCTGGCTAGAGTTTACCATACTTTTGACTTTCAAGTATAATCGGTCTG
TCTCTTTCTGTCGTTTTGTATTTTCTCTTTTTTACTCTTTTTTTTTGCGA
GAATATTTTACTGATATGCTTCAGGAAGAAGTTTAAAAGTAAAAGACTGA
GGACTGAAATTCAATGGGGATTGATATACCCACGTTTTTTATGACTGGGT
ATTCAAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAGTG
AGGATTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCACTGGA
GATGATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAACTT
AATTTCTAATGGAGATGAAAGTGCACTGTATTCTTGTGATATTTCAGTGT
TTTCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGATTACTTTT
AGAAGGATCGTTTAATGATTTTTCTAGTACTGATCACTCATAAAGAAGAA
CAAACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAACTCGA
ATCGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATTATTTGCTT
TTACAGGCTTTAATAATTCATTTGAGGAAAGTATCTCATATAATTTAAAA
AGAGAGAATTGACCATATTACTTGGAGGTATATTGATCATTTGTGGTTTT
TTCTTACGCACGCGCACAATAGCACGTCAAAAAAACACTTTTCAGCCTGT
ACTCGTCAATTGACAATGGCGCGCACAGGCCCCGACAAAGTCAAATCTTT
TCGACCAGTTGCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGAC
GCTATGTATCAGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACA
CCTAGAATCGAGTCTGACAAAGACGCGCCTTCGTTAATCTCAGAATGTAC
GTATGTACATCAGATTATATGAATTAACTGTAACAAAAATCAACTCCTTA
AACTCGGAAGAAAACTGATAATTATCATGGCGACTAAGTAAAGCTTTTCC
CAATATCACTTTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAAG
CCTTTGATTTCCATCTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACA
CGTTACTATTGTCAATTTATTATTTGTTCTTGGTAGATTCAACATATTCT
ACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAG
TGAGGATTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCATTG
GAGATGATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAGC
TTAATTTCTAATGGAGATGAAAGTGCACAGCCACTGTATTCTTGTGAAAT
TTCAGTGTTTTCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGA
TTACTTTTAGAAGGATCGTTTAATGATTTTTCTAGTACTGATCACTCATA
AAGAAGAACAAACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGG
TAACTCGAATCGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATT
ATTTGCTTTTACAGGCTTTAANGAATCGAATCGAATCGGACAAGCAATTA
ATAAAGAGTTAATTAGTTAAAAAATAGCTTAACTATTTTCTTTTACAGGC
TTTGATAATTTATTTGAGGAAAGTATCTCATATAATTTAAAAAGAGAGCA
TTGACCATATTACTTGGAGGTATATTGATCATTTGTGATTTTTTCTTACG
CACGCGCACAATAGCACGTCAAAAAAACACTTTTTAGCCTGTACTCGTCA
ATTGATAATGGCGCACACAGGCCCCGACAAAGTCAAATCTTTTCGAACAG
TTGCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTATGTA
TCAGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACACCTAGAAT
CGAGTCTGACAAAGACGCGCCTTCATTAATCTCAGAATGTACGTATGTAC
ATCAGATTATATGAATTAACTGTAACAAAAATCAACTCCTTAAGCTCGGA
AGAAAACTGATAATTATTATGGGGACTAAGTAAAGCTTTTCCCAATATCA
CTTTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAGCCTTTGATT
TCCATTTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACATGTTACTAT
TGTCAATTTATTATTTGTTCTTGGTAGATTCAACATATTCTACAGTTTCT
CACAACACTTCTTTGGTTGCAAGCTCTTCGAATGACCAGCTTCTTTCTTC
GATTGCACCAAACTCAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047780-exon-scaffold_136-1575043694:219846..220439 | TCONS_00047780-exon-scaffold_136-1575043694:219846..220439 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1575043694:218540..218641 | TCONS_00047780-exon-scaffold_136-1575043694:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1575043694:218297..218398 | TCONS_00047780-exon-scaffold_136-1575043694:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1575043694:215717..215812 | TCONS_00047780-exon-scaffold_136-1575043694:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1510915933:219846..220439 | TCONS_00047780-exon-scaffold_136-1510915933:219846..220439 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1510915933:218540..218641 | TCONS_00047780-exon-scaffold_136-1510915933:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1510915933:218297..218398 | TCONS_00047780-exon-scaffold_136-1510915933:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1510915933:215717..215812 | TCONS_00047780-exon-scaffold_136-1510915933:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1491911889:219846..220439 | TCONS_00047780-exon-scaffold_136-1491911889:219846..220439 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1491911889:218540..218641 | TCONS_00047780-exon-scaffold_136-1491911889:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1491911889:218297..218398 | TCONS_00047780-exon-scaffold_136-1491911889:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047780-exon-scaffold_136-1491911889:215717..215812 | TCONS_00047780-exon-scaffold_136-1491911889:215717..215812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:215717..220439 - |
Blast
The following BLAST results are available for this feature:
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