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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047794 ID=TCONS_00047794|Name=TCONS_00047794|organism=Clytia hemisphaerica|type=transcript|length=2713bpRun BLAST on NCBI transcript from alignment at scaffold_136:244200..274159- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047794 ID=TCONS_00047794|Name=TCONS_00047794|organism=Clytia hemisphaerica|type=transcript|length=29960bp|location=Sequence derived from alignment at scaffold_136:244200..274159- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047794 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 1.316e-36 Identity = 110/334 (32.93%), Postives = 146/334 (43.71%), Query Frame = 2
Query: 77 NGTWAPWGDWGGCDKPCGTGFRYRWRKCTNPAPQNGGLDCAGDYREHKTCNTNL-CERELGGT-WRTTKLCKREQGYCLGPNGRKPSRRGVRELSSEMRGWKIWERKNCMQKCLQTRGITACEMPFGSYRTHDYSRYWTNKGCYGHTAPVTRGN-------GYEKTYCWV--LSKCKTDGV------------------WSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSAS 991
NG W PW W C CG GF+ R R C+NP P++GG C G RE + CN +L C + T W + C + G G +RR + E + G + E ++C T P+ D ++ + Y A + N E YC S C TDG+ WS W+SW+ C G RNR R C +PEP YGG C E + C P CP+DG WS W W KCSA+C G RTR+C+NP P YGG C + ++ LC ++P WS+WS W +C AS
Sbjct: 595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWGPWERCTAQCG------GGIQARRRICENGPDCAGCNV-EYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC--LGPSLEYQECNILP-CPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEA-------LCNTQPCPESWSEWSDWSECEAS 911 HSP 2 Score: 86.6557 bits (213), Expect = 3.922e-17 Identity = 68/185 (36.76%), Postives = 88/185 (47.57%), Query Frame = 2
Query: 575 TDGVWSQWSSWTGCPVCGPSGQRN---RTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSH-LCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPCLDL 1117
DG + WS WT C S + RTR+C P P GG C EI NC + +G W+ W SW CS +C G Q R R+C+NP P++GG C + E R C H LCP W+ W W +C+A CG G Q R R C N G +CA + ++CN PC +L
Sbjct: 539 VDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQC--EGPGMEIANCSR------NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVC--VGQNREERYCNEHLLCPPHMF---WTGWGPWERCTAQCGGGIQARRRICEN------GPDCAGCNVEYQSCNTNPCPEL 704 The following BLAST results are available for this feature:
BLAST of TCONS_00047794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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