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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047797 ID=TCONS_00047797|Name=TCONS_00047797|organism=Clytia hemisphaerica|type=transcript|length=2644bpRun BLAST on NCBI transcript from alignment at scaffold_136:244200..286897- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047797 ID=TCONS_00047797|Name=TCONS_00047797|organism=Clytia hemisphaerica|type=transcript|length=42698bp|location=Sequence derived from alignment at scaffold_136:244200..286897- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047797 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 8.348e-32 Identity = 127/370 (34.32%), Postives = 163/370 (44.05%), Query Frame = 2
Query: 155 VNGTWAPWGDWGGCDKPCGTGFRYRWRKCTNPAPQNGGLDCAGDYREHKTCNTNLCERELGGTWRTTKL---CKREQG--------YCLGPN----GRKPSRRGVRELSSEMR------GWKIWER-KNCMQKC---LQTRGITACEMPFGSYRTHDYSRYWTNKGCYGHTAPVTRGNGYEKTYCWVLSKCKTDGVWSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIHGKWSKWGFWGKCXXXXXXXXXXXXXXXXNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 1189
V+G ++ W W C CG G + R R C P P NGG C G E + C C + G+W L C R G C P+ GR V + +R W W+ C + C QTR C P ++ G Y A E+ C G W+ W+SW+ C V G R RTR C+DP P YGG C +D ++ N + PCP HG WS W WG CSR+C G+ R RTC NP P GG C DS +I+RC + +C P+DG W W SW +CSASCG G++TR R C +P P GG C + V CN + C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPC--PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRA-RLCNNPPPAF-----------GGSYCDGAETQMQVCNER-------NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD---PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS--QIQRCNTDMC---PVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 The following BLAST results are available for this feature:
BLAST of TCONS_00047797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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