TCONS_00047800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047800
Unique NameTCONS_00047800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047800 ID=TCONS_00047800|Name=TCONS_00047800|organism=Clytia hemisphaerica|type=transcript|length=756bp
TTAGATGCACACATTGCAGAACATCTTTTTGAATTCGACGTCAAGTCCGA
CAATCCATCAACAACAGAACACAGAAGACGTCACAGAAGGGCTGCTATAT
ACGACGAAGAATATGAATGGCAGCAAAGCTCTAATGGCATGGTTTATATT
CCGTATCTTATGGGAAGTGACGTTGCGCCAATAGTCCGAGGCGTAATGGC
GGCAGCTATCCAAGACTTCAACCAGCACACATGCATTCGTTTTGTACCCC
GACAAAGTGAAAGTGATTTTGTTTACATCTTTACCTCTGGGTTTGGTTGT
TATGCCAACGTTGGTAAGCAGAAAGGATTGACACAAGTTTCTTTGGACGA
AATCTGTGGACAGAAAGGTATTGCACTCCATGAATTGATGCATGTCTTGG
GCTTCAGACATGAACAAGGTAGAAGAGATCGTGGACGATATATCACTATA
CATTATGATCGTATTAAGCCACAATATCGGAATCAGTTTACCTTGGACGA
ATATGGAAAATATGTTGTTTATGGTACTGAGTATGATGGACAAAGCTTAA
TGCATTACGGAAACCGTGTTGGAGGACTTACACCAGACCTGGTCACAATC
AGTTCAAAGGTTGACCCTTCTCAAACGTTCGGTCAACGGAACGGATTCTC
AACGCTCGATTTACGGGAGATCAATTTGAAGTATAAATGTGGAAAACAAT
ATGTCAATTACGATTGATGATATGTATAATATATTCGAGAAAAACCCGTA
TTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00047800-protein

>TCONS_00047800-protein ID=TCONS_00047800-protein|Name=TCONS_00047800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
LDAHIAEHLFEFDVKSDNPSTTEHRRRHRRAAIYDEEYEWQQSSNGMVYI
PYLMGSDVAPIVRGVMAAAIQDFNQHTCIRFVPRQSESDFVYIFTSGFGC
YANVGKQKGLTQVSLDEICGQKGIALHELMHVLGFRHEQGRRDRGRYITI
HYDRIKPQYRNQFTLDEYGKYVVYGTEYDGQSLMHYGNRVGGLTPDLVTI
SSKVDPSQTFGQRNGFSTLDLREINLKYKCGKQYVNYD
Run BLAST on NCBI

transcript from alignment at scaffold_136:288585..295195-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047800 ID=TCONS_00047800|Name=TCONS_00047800|organism=Clytia hemisphaerica|type=transcript|length=6611bp|location=Sequence derived from alignment at scaffold_136:288585..295195- (Clytia hemisphaerica)
TTAGATGCACACATTGCAGAACATCTTTTTGAATTCGACGTCAAGTCCGA
CAATCCATCAACAACAGAACACAGAAGACGTCACAGAAGGGCTGCTATAT
ACGACGAAGAATATGAATGGCAGCAAAGCTCTAATGGCATGGTTTATATT
CCGTATCTTATGGGAAGTGACGTTGGTAAGAATTGAATTGTAATATCAGA
GTTCTTCTCGTTCTTCATAGTCCTTAGCAAAGCAACAAATTCTTTAACCA
AACTCTTTTCAAATTGGGGATATCCAAGTTTTAAGTTTTGAACTTTTTAA
CAAGTTTTGCTTACATATTCTAAATCTTTTGAGGGCATTTTGACACGCCT
TCTTCTTGTCTTCTCAGGACAAATTTTTTCTTTTCGGAACCATTTTAAAT
GATGCTACTCTATGAACTGAGCAATCATTAAAGACAAAAATTGGATGCAA
AAATGATTGAATTTGAAAGATTTTCTTCAAATGAAGATTTTTAAATTTTG
TTTTTAAAAATTACGAAAAATTCTGAAGAAGATTCAAGAAATGATGAAAA
TCGCTAATTTTAGTACCGATGTACTAAATTTCTCAAATTTTTGACTGCAT
ACCACCTTTTTGGTACTAAACCACTAAAATATACCATTAAAAGACACGAT
GTCTGATATTTTACTTACGACACCCTTTAGTAACGACACCCTTTAGTCTT
TACCACAAAAAGAAATGAAGTCTTCTCAAAAATTTATGTGTTTCTCCTTA
CGCTCGCGTCTGCACTATCAATGTTCGACGATGATAAGAAAGCTAGGCGC
TCCTGTTTCTAACTTCCGTCTAGTAAGGCTCCACAGAATTAGTTCTTTGC
TTCTTTTTATCTATTACCTGTCTCCTCACCAGTCCTCACAGTTGATACCT
TAAGGGAAAAAATTTTCACAGGAAGAAACTTTTGAGAGAATTCAATATTG
CCTATTATGCCCTAAAAAGACAATAATTCTAGAGAAAATTTCTTACTCTA
AGGTCCCGAATAGTAGTCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCG
GCCCCCCCCCCCCGTTCTTATTAGGACCCCCCCGTTTATTGATTTTGACA
AAAAATTTTCAGAGGTCAACCAAAAGTGTCTCTAATTCCTCAAATTAGCA
TATACTGGTGTTCTTTTTGCTCATTTTTGATGTCTTTGAAGAAGATTTTC
AACCTTTAACTCATCATCCAACAAAGAAATCTCCTCATATTCAATAAAAT
AAGTATGGGGCAGAGTCAGACAGAAAAAATTTCGGACCCCCCCCCCTTTT
ATTCAGACCCCCCCCCCGTTTATTCGAACCCCCCCCCCTTTTTTCCCCCC
CCCCCCCCCTTTTTTCCCCCCCCCCCCCCCTTTTTTCCCCCCCCCCCCCC
CTTTTTTCCCCCCCCCCCCCCCTTTTTTCCCCCCCCCCCCCCCTTTTTTC
CCCCCCCCCCCCCCTTTTTTCCCCCCCCCCCCCCCTTTTTTCCCCCCCCC
CCCCCCTTTTTTCCCCCCCCCCCCCCGTTTATTCGAACCCCCCCCCCTCC
TATTCGGGACCTTAGAGTACCTTAAAGGTAGGTGAAATGCCATAAAAATC
CCTGTTTTAATGTATAGTATGTTTCTTCCATAATGCATAAATCCATCATT
TATAAATTTTGTTCTCCTATTGTAACAGCGCCAATAGTCCGAGGCGTAAT
GGCGGCAGCTATCCAAGACTTCAACCAGCACACATGCATTCGTTTTGTAC
CCCGACAAAGTGAAAGTGATTTTGTTTACATCTTTACCTCTGGGTTTGGG
TACGTTTCATTTGTTTCTTAACCTACTTCATACAATCTTTTGTTATCAAA
TAAAAGTAAAGTCGTTTTAAAGGGACATAACAGTACTTGCGAAATTTGTA
AACAAACTGTATGCAGCGGATACAAAATCAAAACAAATGTCACATGTCAA
AATAAAAAATCAAACCAAATATGGCTAATTTTGATTGTTCGATTGTTTTA
CAAGTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACGTG
GTTCGCGCAATGTTTACATTTTACTGCTGTAATGTCCCTTTAAGTTGGTG
AGAGCTGAAAATGAAGAATTTTGAGATTTTCATGATACGATGTTTCTCCT
TACAGAGGATGTAAGGTTCTGTATTGAAAACCCACTGTCTTATGTGCTAT
ACTGCCTTCCTGAGACACTGACACAGCTTTTTTTAATCAAGTGCGTTTAT
CCGGCATGAACCACCAGGAAACAAGGTCATTGATACCTAGCACATTCACT
CACCAAGTGAATCGCAGCGCCGAGTGAGAGTCGAACCTCCGCTTCCTGGA
CGGCAGTCAAGACTACACTACTTTGCTACTGTACTACATTTCTTATTTCA
GTTGTTATGCCAACGTTGGTAAGCAGAAAGGATTGACACAAGTTTCTTTG
GACGAAATCTGTGGACAGAAAGGTATTGCACTCCATGAATTGATGCATGT
CTTGGGCTTCAGACATGAACAAGGTAGAAGAGATCGTGGACGATATATCA
CTATACATTATGATCGTATTAAGCCACGTAAGTCGTTTATTTTGTTTTGA
TATTTGTTGTCTAGTATCAATAATATACTGCTTCTATTTGACGTTTCTCC
TTCTAATAATTTCTTCCATTTGAAAGTTAAAACTGAGTTTATATATGTGT
GTTTTTCTGCGACGGAGACGGTAAGGTTCTTATTTGACTAGATCCTGACC
AGCTGAAGACGACTTTAAATCAACACTTTTGCCGTCCCGAATCGCTTAAG
TCACTTTACCGTCCTCAAAAGTGTAAATACACAACTTGCTAAAACATTAC
TGTGGGAGGTATTAAATATATGTTGAGAAGTTGTTACAACATCTAGACGT
GTCCAATGAATCCGAAATGGACTAATCACAATGTTCTTCAATGTAGGAAG
GCCTCTTTGTCCGCAAAGAGTTTACCAGCTGTTTCAGTTAGCATGACTTT
CTTCTGCTCTTTAAGCTGTCTTGTTCAGTATCTTTCTGCCAGTTGATCAA
TGGGCAATTTGCAGGTGTACCTCCCTTTCATTTTCTTGAGGCACGTAAGC
TGGTCCTGTAGCTCGTATCGATTGAGCTTTGCTTAGCTCGTCTTTGCGAT
CAGTTTTGACGATAGATTCATGCCGTTGTTACGGAAGCAGTTTTTGAGGT
CATGCTTTTTTGTCTCCAAGAACTACACAACACAGTATAACTTCGAAAAA
ATATAATTTCCACTCTCAATGTCTTTCCTATTTTTCGAAATTTTTCCTTG
TTTTCGAAAGTTCAAACATAGTTTTACTCCACTCAAAAATGGCTTTTTAA
TGAATTCTGTCTCTTGGTTAAACCATTTGTGGATAAAAAGTTATGGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGCTCGACCTATTCCCCTAACAAAATACGCATTGCTTTAAAAAGAT
TAGATTTTCTGTAAACATAAAGAGCTATATCTTTTGATAGAGAAGTTTTT
AGAGAAAATTATTTTCAGAGGTCATTCCTTGGAAGTATGTGATGTGATTT
AGGTATTTTCAAAAAAATGTTTAGTTCCCCTTTAAGGTATTACAAAGTTT
TAAAGGAAATTACAAAGTTTCAAAGGAATTACAAAGATTGAGAGGCGCTG
CAAAGCGTGAGAGACGTTACAAATTTTGAAAGGTACACCAAAGTTTTAGA
ATCTTACAAAACTGGAATAGTATTAGAAAGGTTGAAAGATATAACAAAAT
TTCAGAAAAATTACAAAGATTGTGAGGTGTCATAAAGCTTTACAAACCGT
GAGAGGTATTACAAACTTTGAAAGATTTTATAAAAGAGATGTTACAATTT
TTGAGAGATATTAAAAAGTGAGCGGTATTACAAATTTTGAAAGGTAATAC
AAATTTTGAAAGGTAATACAAATTTTGAAGGGTATTACAAATTTTGAAAG
GTAATACAAATTTTGAAAGTATTATAAATTTTGAAAGGTATTACAAATTT
TGAAAGGTATTACAAATTTTGAAAGTATTATAAATTTTGAAAGGTATTAC
AAATTTTGAAAGGTATTACAATTTTTGAAAGGTATTACAAATTTTGAAAG
TGGTATTACAAATTTTGAAAGTATTATAAATTTTGAAAGGTATTACAAAT
CTTGAAAGGTATTACAAATTTTGAAAGGTATTACAAATTTTGAAAGGTAT
TACAAATTTTGAAAGGTATTATAAATTTTGAAAGGTATTACAAATTTTGA
AAGGTATTACAAATTTTGAAAGGTATTACAAATTTTGAAAGGTATTACAA
ATTTTGAAAGGTATTATAAATTTTGAAAGGTATTATAAATTTTGAAAGGT
ATTATAAATTTTGAAAGGTATTACAAATTTTGAAAGGTATTATAAATTTT
GAAAGGTATTATAAATTTTGAAAGGTATTACAAATTTTGAAAGGTATTAT
AAATTTTGAAAGGTATTATAAATTTTGAAAGGTATTATAAATTTTGAAAG
GTATTACAAATTTTGAAAGGTATTATAAATTTTAAAAGGTATTATAAATT
TTGAAAGGTATTACAAATTTTGAAAGGTATCACAAAGTATCAAAATAATA
AAAATGTTTAATAGGTATTACAAAATGTAGCAGGTGTATTATATGGTGTG
TTATATAAAGTGCAAGAAGACGTAACAAAGTTTGCGAGATATTACGAATT
ACGTAGTAGCCAGTAGATATGAATCTTCTTGTTGTCGTGTTTGAAAACAA
TATGTTGATTTCCGGACTTTTATTTCTTTTTGTAAATATGATATTTGACG
TCAAAATACATAATAACGCTGATTTTTTAAACACTCCTATAAACCTTAAA
ACAGGTAGCGCTACACAGGCTTTACTTCTCATCCAAATGTTTTTTCTCTA
GCCCCTTATGGTCATTTTTAAACTCGATGCAACAACAAGGTAGAAGTTTG
ATCGTCTTAATTTGGTGTAATACTATATTTAATTATATGGTTGATTACAT
TTAGCTTAGATTTGTAAGGGACGAGCGGGGCGATAAATCCGTAATAACCC
CGCTTTTTTGTAATCGGCCTGATGTAAACAAAAATTTCTATTGGTTGAAA
AGTATCGTACGATATCTTCAGAGCATTTTGATTGGTTAAAAAAATATCAC
ACAAAATTTTTAAGCAAATCTAGATAAGAGAGTCAATCAAATGTTTTTTA
TAGTTTCGAATGTTTTTATAAGTTTCGAAAAAAAATTTAAAAAAACGATT
GATTGTTCTTCAATTCTTTTTTTGACCATATAATTAACGCGGAATAACAT
GGTATTCTCGGGTGATTTTGGATTAATAACCCCTTGTATCATTGAAAACA
TTTCAAAATAGCCCTCACTACGTTTGGGCTATTTTGAAATGTTTTCAATG
AACCTCGGGGTTATTAATCCCAAATCACTCTCTAAACCATGTTATTACTA
GTACTAATAAAACTGTGCTAGGAATAATGACCATTCAAGTGCCTACTTTC
GATGAGATAACATCTTAAGCTTTTCGAGCTATGTTAAGCTAATAATGTGT
AAACGTTTTTCATAGAATATCGGAATCAGTTTACCTTGGACGAATATGGA
AAATATGTTGTTTATGGTACTGAGTATGATGGACAAAGCTTAATGCATTA
CGGAAAGTGAGTTTTACACTCCTGGCGCTGATTTTTTCCCCGGCCGGGGT
GGTGCAACATTTTTTAGCTAAATTAATAAAATTTTACAGACCGGAGCAAT
TTTTCCCCGATAACATATATCCTTATAAATCATTCAATTGTGATTTCTTG
GTGTTTGTGTTGATTAGAGTACCTTTTAAGATGGTAAAATATTAGGCTGC
TTGCATCCTCTAACGAATTCGTGCATCTTTTTATACTACCTGCGATTTTG
TAGAGGTCTGCGATTCAGACTAGGAAAATATAAAATAGTCTTTTCGATCG
TTTTATCGGAGAGGTATGTCATCCTTATACTCAAGATGGATGAAGATTGA
AATCTTTGAAGAAGAAATTTTAAGCTGTTTTGAGGAATTTTACCTTGTGA
ATGTTTTCTCCATTCCAGCCGTGTTGGAGGACTTACACCAGACCTGGTCA
CAATCAGTTCAAAGGTTGACCCTTCTCAAACGTTCGGTCAACGGAACGGA
TTCTCAACGCTCGATTTACGGGAGATCAATTTGAAGTATAAATGTGGAAA
ACAATATGTCAATTACGATTGATGATATGTATAATATATTCGAGAAAAAC
CCGTATTTGCA

Coding sequence (CDS) from alignment at scaffold_136:288585..295195-

>TCONS_00047800 ID=TCONS_00047800|Name=TCONS_00047800|organism=Clytia hemisphaerica|type=CDS|length=3585bp|location=Sequence derived from alignment at scaffold_136:288585..295195- (Clytia hemisphaerica)
CCGTGTTGGAGGACTTACACCAGACCTGGTCACAATCAGTTCAAAGGTTG
ACCCTTCTCAAACGTTCGGTCAACGGAACGGATTCTCAACGCTCGATTTA
CGGGAGATCAATTTGAAGTATAAATGTGGAAAACAATATGTCAATTACGA
TTGAAATATCGGAATCAGTTTACCTTGGACGAATATGGAAAATATGTTGT
TTATGGTACTGAGTATGATGGACAAAGCTTAATGCATTACGGAAATTGTT
ATGCCAACGTTGGTAAGCAGAAAGGATTGACACAAGTTTCTTTGGACGAA
ATCTGTGGACAGAAAGGTATTGCACTCCATGAATTGATGCATGTCTTGGG
CTTCAGACATGAACAAGGTAGAAGAGATCGTGGACGATATATCACTATAC
ATTATGATCGTATTAAGCCACCGCCAATAGTCCGAGGCGTAATGGCGGCA
GCTATCCAAGACTTCAACCAGCACACATGCATTCGTTTTGTACCCCGACA
AAGTGAAAGTGATTTTGTTTACATCTTTACCTCTGGGTTTGGTTAGATGC
ACACATTGCAGAACATCTTTTTGAATTCGACGTCAAGTCCGACAATCCAT
CAACAACAGAACACAGAAGACGTCACAGAAGGGCTGCTATATACGACGAA
GAATATGAATGGCAGCAAAGCTCTAATGGCATGGTTTATATTCCGTATCT
TATGGGAAGTGACGTTGCCGTGTTGGAGGACTTACACCAGACCTGGTCAC
AATCAGTTCAAAGGTTGACCCTTCTCAAACGTTCGGTCAACGGAACGGAT
TCTCAACGCTCGATTTACGGGAGATCAATTTGAAGTATAAATGTGGAAAA
CAATATGTCAATTACGATTGAAATATCGGAATCAGTTTACCTTGGACGAA
TATGGAAAATATGTTGTTTATGGTACTGAGTATGATGGACAAAGCTTAAT
GCATTACGGAAATTGTTATGCCAACGTTGGTAAGCAGAAAGGATTGACAC
AAGTTTCTTTGGACGAAATCTGTGGACAGAAAGGTATTGCACTCCATGAA
TTGATGCATGTCTTGGGCTTCAGACATGAACAAGGTAGAAGAGATCGTGG
ACGATATATCACTATACATTATGATCGTATTAAGCCACCGCCAATAGTCC
GAGGCGTAATGGCGGCAGCTATCCAAGACTTCAACCAGCACACATGCATT
CGTTTTGTACCCCGACAAAGTGAAAGTGATTTTGTTTACATCTTTACCTC
TGGGTTTGGTTAGATGCACACATTGCAGAACATCTTTTTGAATTCGACGT
CAAGTCCGACAATCCATCAACAACAGAACACAGAAGACGTCACAGAAGGG
CTGCTATATACGACGAAGAATATGAATGGCAGCAAAGCTCTAATGGCATG
GTTTATATTCCGTATCTTATGGGAAGTGACGTTGCCGTGTTGGAGGACTT
ACACCAGACCTGGTCACAATCAGTTCAAAGGTTGACCCTTCTCAAACGTT
CGGTCAACGGAACGGATTCTCAACGCTCGATTTACGGGAGATCAATTTGA
AGTATAAATGTGGAAAACAATATGTCAATTACGATTGAAATATCGGAATC
AGTTTACCTTGGACGAATATGGAAAATATGTTGTTTATGGTACTGAGTAT
GATGGACAAAGCTTAATGCATTACGGAAATTGTTATGCCAACGTTGGTAA
GCAGAAAGGATTGACACAAGTTTCTTTGGACGAAATCTGTGGACAGAAAG
GTATTGCACTCCATGAATTGATGCATGTCTTGGGCTTCAGACATGAACAA
GGTAGAAGAGATCGTGGACGATATATCACTATACATTATGATCGTATTAA
GCCACCGCCAATAGTCCGAGGCGTAATGGCGGCAGCTATCCAAGACTTCA
ACCAGCACACATGCATTCGTTTTGTACCCCGACAAAGTGAAAGTGATTTT
GTTTACATCTTTACCTCTGGGTTTGGTTAGATGCACACATTGCAGAACAT
CTTTTTGAATTCGACGTCAAGTCCGACAATCCATCAACAACAGAACACAG
AAGACGTCACAGAAGGGCTGCTATATACGACGAAGAATATGAATGGCAGC
AAAGCTCTAATGGCATGGTTTATATTCCGTATCTTATGGGAAGTGACGTT
GCCGTGTTGGAGGACTTACACCAGACCTGGTCACAATCAGTTCAAAGGTT
GACCCTTCTCAAACGTTCGGTCAACGGAACGGATTCTCAACGCTCGATTT
ACGGGAGATCAATTTGAAGTATAAATGTGGAAAACAATATGTCAATTACG
ATTGAAATATCGGAATCAGTTTACCTTGGACGAATATGGAAAATATGTTG
TTTATGGTACTGAGTATGATGGACAAAGCTTAATGCATTACGGAAATTGT
TATGCCAACGTTGGTAAGCAGAAAGGATTGACACAAGTTTCTTTGGACGA
AATCTGTGGACAGAAAGGTATTGCACTCCATGAATTGATGCATGTCTTGG
GCTTCAGACATGAACAAGGTAGAAGAGATCGTGGACGATATATCACTATA
CATTATGATCGTATTAAGCCACCGCCAATAGTCCGAGGCGTAATGGCGGC
AGCTATCCAAGACTTCAACCAGCACACATGCATTCGTTTTGTACCCCGAC
AAAGTGAAAGTGATTTTGTTTACATCTTTACCTCTGGGTTTGGTTAGATG
CACACATTGCAGAACATCTTTTTGAATTCGACGTCAAGTCCGACAATCCA
TCAACAACAGAACACAGAAGACGTCACAGAAGGGCTGCTATATACGACGA
AGAATATGAATGGCAGCAAAGCTCTAATGGCATGGTTTATATTCCGTATC
TTATGGGAAGTGACGTTGCCGTGTTGGAGGACTTACACCAGACCTGGTCA
CAATCAGTTCAAAGGTTGACCCTTCTCAAACGTTCGGTCAACGGAACGGA
TTCTCAACGCTCGATTTACGGGAGATCAATTTGAAGTATAAATGTGGAAA
ACAATATGTCAATTACGATTGAAATATCGGAATCAGTTTACCTTGGACGA
ATATGGAAAATATGTTGTTTATGGTACTGAGTATGATGGACAAAGCTTAA
TGCATTACGGAAATTGTTATGCCAACGTTGGTAAGCAGAAAGGATTGACA
CAAGTTTCTTTGGACGAAATCTGTGGACAGAAAGGTATTGCACTCCATGA
ATTGATGCATGTCTTGGGCTTCAGACATGAACAAGGTAGAAGAGATCGTG
GACGATATATCACTATACATTATGATCGTATTAAGCCACCGCCAATAGTC
CGAGGCGTAATGGCGGCAGCTATCCAAGACTTCAACCAGCACACATGCAT
TCGTTTTGTACCCCGACAAAGTGAAAGTGATTTTGTTTACATCTTTACCT
CTGGGTTTGGTTAGATGCACACATTGCAGAACATCTTTTTGAATTCGACG
TCAAGTCCGACAATCCATCAACAACAGAACACAGAAGACGTCACAGAAGG
GCTGCTATATACGACGAAGAATATGAATGGCAGCAAAGCTCTAATGGCAT
GGTTTATATTCCGTATCTTATGGGAAGTGACGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030416XLOC_030416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047800-proteinTCONS_00047800-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047800-exon-scaffold_136-1575043694:295021..295195TCONS_00047800-exon-scaffold_136-1575043694:295021..295195Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1575043694:293247..293367TCONS_00047800-exon-scaffold_136-1575043694:293247..293367Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1575043694:292469..292644TCONS_00047800-exon-scaffold_136-1575043694:292469..292644Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1575043694:289190..289280TCONS_00047800-exon-scaffold_136-1575043694:289190..289280Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1575043694:288585..288777TCONS_00047800-exon-scaffold_136-1575043694:288585..288777Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1510915933:295021..295195TCONS_00047800-exon-scaffold_136-1510915933:295021..295195Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1510915933:293247..293367TCONS_00047800-exon-scaffold_136-1510915933:293247..293367Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1510915933:292469..292644TCONS_00047800-exon-scaffold_136-1510915933:292469..292644Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1510915933:289190..289280TCONS_00047800-exon-scaffold_136-1510915933:289190..289280Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1510915933:288585..288777TCONS_00047800-exon-scaffold_136-1510915933:288585..288777Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1491911889:295021..295195TCONS_00047800-exon-scaffold_136-1491911889:295021..295195Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1491911889:293247..293367TCONS_00047800-exon-scaffold_136-1491911889:293247..293367Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1491911889:292469..292644TCONS_00047800-exon-scaffold_136-1491911889:292469..292644Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1491911889:289190..289280TCONS_00047800-exon-scaffold_136-1491911889:289190..289280Clytia hemisphaericaexon
TCONS_00047800-exon-scaffold_136-1491911889:288585..288777TCONS_00047800-exon-scaffold_136-1491911889:288585..288777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:288585..295195 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.79955	5.75552	3.15777	2.44277	2.27411	2.14261	2.00127	2.26389	2.84207	2.91107	1.37992	1.987	1.20779	1.20951	1.3995	1.77854	36.6143	45.1639	0.482624	0.432884	47.6589	51.4785	20.525	25.5563	29.2471	23.6164	76.1277	60.9342	2.30362	2.49371
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00047800 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 3.211e-34
Identity = 75/194 (38.66%), Postives = 105/194 (54.12%), Query Frame = 1 
Query:  115 EWQQSSNGMVYIPYLMGSDVAPIVRGVMAAAIQDFNQHTCIRFVPRQSESDFVYIFTSGFGCYANVGKQKGLTQVSLDEICGQKG--IALHELMHVLGFRHEQGRRDRGRYITIHYDRIKPQYRNQFTLDEYGKYVVYGTEYDGQSLMHYGNRVGGLTPDLVTISSKVDPSQTFGQRNGFSTLDLREINLKYKC 690
            +W    +G+V +P+L+ S      R V+  A+ +F + TCIRFV  Q + DF+ I    +GC+++VG+  G+  VSL   C QKG  I LHELMHVLGF HE  R DR RYI ++++ I P +   F   +    +   T YD  S+MHYG R+      L TI+    PS   GQR   S  D+  +   Y C
Sbjct:   93 KWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQDQRDFISIIPM-YGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSSNML---TPYDYSSVMHYG-RLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGC 281
The following BLAST results are available for this feature:
BLAST of TCONS_00047800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL3.211e-3438.66Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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