TCONS_00047802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047802
Unique NameTCONS_00047802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047802 ID=TCONS_00047802|Name=TCONS_00047802|organism=Clytia hemisphaerica|type=transcript|length=674bp
GCGAGGAGGGCAAGAATCAAGATGGCGACCGGGACAGCAGAAAATCAAAT
GCAACAAATTCCTTTGGATCAATTACCTGTTCAACAACTTGACCAGATAA
AACGTGATATTGATCAAGAAATAAATGTTTTTACTGAGTCCATCAACCAA
CTGAAGATAGCCCAACAAAAATTTAAATTTCATGCTTTAGAAACAAAGAG
GATATAAAATTCAATTTACAACAATGATGGACAACAATGATTTAGTTGAT
TCTGAAGAAAGTGATGATTACTATGATGATGAATATCAAACCGAAATGAA
TAGTGATGCAGAAAGTGAGAGTGAACTTGGATTTTCTACTATGGAAAATC
TTGCAGTTTTGTTAGATTCAATTAAAGATAAATCTACATCTGATGACACT
CTTGGGAAAATTAAAGCAGAGATCTCTTCTACATTGCTTCAGGCTAGCAA
AACAAGGAGAAGATATTTTGGTTTCCTTTTGGAAAATAGCTATGATCTTG
CCAAATTTGAAGAAGGCTCTTCTATGCTTAAAGGGAATGACAAATTAATT
TGGAATATGGTTAAAgcagcaaacaaagatttcttTTCAGAAGACCAATT
CACTTTCTACTTAACAATGATCTATCGAAAGAAAACTGGAAAATTAGATT
TTAGAAGAAGACGTGTGCATGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_136:312561..318041-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047802 ID=TCONS_00047802|Name=TCONS_00047802|organism=Clytia hemisphaerica|type=transcript|length=5481bp|location=Sequence derived from alignment at scaffold_136:312561..318041- (Clytia hemisphaerica)
GCGAGGAGGGCAAGAATCAAGATGGCGACCGGGACAGCAGAAAATCAAAT
GCAACAAATTCCTTTGGATCAATTACCTGTTCAACAACTTGACCAGATAA
AACGTGATATTGATCAAGAAATAAATGTTTTTACTGAGTCCATCAACCAA
CTGAAGATAGCCCAACAAAAATTTAGTGAGTCCTTAGAAAATCTTAATCG
TGTCACTGTTGAAAATGAAGGAAAAGAACTCATGGTTCCTATGACTTCTT
CAATGTATGTACCTGGTATTTTAGACGAAACAAGTTCTGTTGTTGTTGAT
ATTGGCACAGGGTATTATGTTGAAAAGTCTGTAGAGGAAGGGAAAAGATA
TTTCAGACGAAAAATAGAATTTGTTGGTAAACAGCTTGAGAAAATTCACC
CAATGCTTTTGGAAAAACAAAGAATAAGAAACGCCTTAATTGAAGCACTC
AGTGCTAAGTTATCTACCCAGCAACAAGAGGCACCAAAACCAGGAGACAA
GAAGACCTAACAGTTAAAGATAATATAGGGGAAAGAAAATGAACAAAGAA
TTAAATTGAGTAATAAAATGATTATAATGGCCAAAAAAATGGCTTTGTTT
TTGGTTGTTTTCAAATTGATATGCTACTCAATCGCATTGAAAATCAATCT
TCATTAAANTAAAATGATTATAATGGCCAAATAAATGGCTTTGTTTTTGG
TTGTTTTCAAATTGATATGCTACTCAATGCCATTGAAAATCAATCTTCAT
TAAATTATGTATTAGAAATTAAATTTTTATGTATATGAATTTAATTATTA
TACAACTTGTAGTAAACTTACATTTTCAGTTGCAATATTTTCTATTTCAT
CTTTAAATATTTAAAAGCTTATTTTGCAATTTTGCTTGCTTTTCTTATTT
TTTAAACTTAATTTCTATCTCTCAACAGTGTTACTCATGCTAAAATTCAG
GGAAATCCTTTTAATTACCTTAAAATTTTGCCGATTTTGACCAAATCTGC
CAAAACTTCTTCCCTTAAAGGTATGCGCTTAACTTCAGAGATTGAAACGC
ATAATTACTAGATTAAAATTGTAGAATTTTTTAGGATGCATTTACACGCT
TGCCGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCG
TCAAACGAATGACCTGGCTGGTCCTTAAAATACAAAGTTAAATCAAAACA
AAAATGGTAGAGTAGAGCTGCGACCGGAGCTGTGACCGGAGCTACATAGT
TCATTTGTTTTGAAATTTTGCTGCTTTGATTGGTCAGTCATTTGAGGGCT
ATGCATGTTAGCCTCCACTGATGCAAGTTACCCGACTTCACAGTATTACT
TTTCAAAATTGATGTGCATTGGCGGTAAGTGTTTAAATGCATCCTTAGCT
TCCGTAAGTTGGTGTAATGTAGAGACCCCTCTTCTAAGGCCCTCCTGACA
CTGGAAACGTCCAAAGAAAAAAGTGCCATTTTTTGTGCTCCGGAACACTG
TAAGATTCAGGAGCACTTCCGTTGTTCCAGAGCACAATTTTTGGGGATTG
GTCTGCACCGTAACCTAGGAACTTTCCGGTGTTCCGGAGCAAGATATCTG
GGATATAATTATACGTTTTAAAAAATCAGCCGACTTGTGGAAGTGAAACC
TCACGTTTTTCAATTTTTTCAATATTTCGACCAGTCAAATATAATGTGAC
AAACTCAATTTCATTAATGGCTGAACCATCATATCAATATATTTTGTAAC
CAAGTTCAAACGGTTTTTTAGAACGTGTTAGAACTTGCTCCAGAAGCACC
GGAAGAACTGCGGAACTTTCCGGAGAGAAAAATCCTTGCATTTGGACCCA
TTTGCACAGGGTTCGACATGCAGCAAATGCAACAGGTCGAAAACGAAAGT
GACGAAAAATCACTGTGCAAATACACTCGATCACTGCAACCCGTTGCATT
TACACAGAGTGGAAAGTTAGGAAACTCAATTATAAAAAAATGCACAGATC
AAAATTTTAACCCATAAAAAGGCTAAAGAATCTTCTAAAGAAAAAATGAA
AATGCCATTAGTCTTCGTTTTATGCCATTTTCATTCTAAAGTTGAGATTT
GTTAATTTTCGCGCATTTTGCCTTCCACGTTCTAGCTCGTTTGCACATGG
TCGGAAAAAATCGTTGAAACTGTTGCAAATGCACACCCCATGCAAATGCA
AGGATTTCCGTGACTGATAGTGTTTTTTTAGCTGTTGAAGTTTCCGGAGC
GCCCATGGTTTCAGCCCCCCAGAAACCTGAAGGGCACCTAGGCCAGGTTA
GTAGTGGGGTGCTAATGTTTTGCAATTCTTTGGGGTTACCTATTCATTAA
GGGTACCTAGCTGTCTTGATGGAGGCTCTGGGGGCTGGTTATATTTTCCA
AATCAAATATTTCAAAATATTTCAAATTATTGAATTTTTTTACCCCATCA
CCTAGTTTCCCATCCAATTTTTCTTTCGTTTCCCATCGCGCCATCTTTTG
CTATATTTTTCTAATGTGATTGTTTTGATTGTTTTGATTTACAGCCGCCA
TCTTTATAGCATAACAACAAAGCTTATTAGCAGGCGTTCATGCGTGAGCG
CTTCCCATGCTATCAAAGAGAAGCTAAAACGTTAGGATATGAGAGTAAAC
AAACATGGTAGCTAGTTTTGTTTTTGGCTCTGTTTCACACTCATAACATA
ACTGATAACAATCTTCTGTAGATGTTTTGAAATCTTTACTGGTACTAATA
TTTATTCCTTGCTGCATTCCTGTATATTATATAATAACACTATTCATCAT
TAGAAAGATTTAAAAATCATTAAGATTTTAGGAATGACAAAAGAACAAAA
AGTGTCAATTCAAAAAAATTATCGGCTGAATAGGGGTACCTATCTCAAAG
CAATTTCTCAAGGGAACCTAACTCGTTTGGGGCACCATGCTTCAATGGGG
GCACCTTAAAAGTTGGCTGAAACCATGAGCGCCAGAAGGGTGAGGACCTT
CTAATTAGATTAGGTATGTCAAAACTTGAGGGATACTTACTTAGGCAAAA
ATGGGTGCTGTGTATGTGCGGACGGTAAGGGCACTAGGTTTTTTCACCTT
TCAAAGTTTCTCTAAGGGTTGGGGAAATCAAATAGTGTTAAATTAGTCTC
TAAGGGGTCACAGAAGAGTGAAAAGCCAAGAAAGTAAGAGAATTTTTTCA
AAAGTTTTGGAGAATTCTTTTAAGAATCTAAGAAATTTTTGTGAAAATGT
CTTTATAAGGATCACGTATTTATCAATTTTGGCTCTATATGGGCTACTTT
TTTAGCAAAAATCAGTGTCTCTGCTGGGCCAATCCTAGTACCCCTGGGTC
AACATTAGACCAACTTACAGTAGTCTATCATTTAGAAAACATCATTTGCT
TCAGATAGCTATGATGAATTTCTAATTTTGTGGACTATCTTACTTACTGT
TGCCATAAAAAACTTAGGCCAATAAATACATGCGGTTTCTCGGACTATCC
AAAGGCATTGTACCTCTGGTGGCCATTTTTGTTTCCAATTTTTTCAGGGC
TCCATATGTTACACCGAACACATAACAAGTGTTATGTCTGGTTTCGTTTT
TGAGTCAAGACAGGTCAAGAATACTTTTTTACACCTGAAAATAGCACCGA
ACTGGTGCATCAGTGAGGTCGTTTTTCTTCTTTCTCTTTACAATGATTGT
TAACACAACACTTTGATAAAAATATTCCCATGCAAAGTTTATTATATACA
AATCTACAACAAAAAAGAAAGTTGTCTTTTCTGCTGTTATTTTGTGAAGT
TACAGAAGGACTTCTTTAAGAATGTAACCCTAAAGATGCCATTCTTCTCA
TTTTTTATTCTGTAACAAGAAGTAGGTAGGTTGATATTTTTACAGTCATA
TGTTGCGCTAGAGGCTGAAAGATCATATTTTTTTATCCTAATGATATAGG
AGTTCTAGACTTATATGGTAAAGTCCCAAAAAAGTCTTTGAATATAATAA
GAAGAATTTACAATCATGAAAATTTATTTTGATTATACTGTGCGAAAAAT
AAAACATGGAAAAGTCTTCTTTTTTATTGGTTTGATCATAATAAAGGATT
GATTGAGAAAATTTTCTGTGTAACTACTATGGGTAAGCACCCTATTGCTA
AGATGTTGGCTTAAAATTGAAAATGAAGCCACTAAAAGTGATTTAAGTGA
AATCATCCCATACAGTACCGCTGGATAAACCTTGTTTGTTGTCCTAATTT
TTGAAAATATAAGATTTTCCATCCCCCAATTTATTATGCACATGAGGGTA
CTTTTTATATTGTGAGGAATAGTTTCATTTTTGAAATAATATTTCTTCTT
TAGAATTTCATGCTTTAGAAACAAAGAGGATATAAAATTCAATTTACAAC
AATGATGGACAACAATGATTTAGTTGATTCTGAAGAAAGTGATGATTACT
ATGATGATGAATATCAAACCGAAATGAATAGTGATGCAGAAAGTGAGAGT
GAACTTGGATTTTCTACTGTAAGTGATGATTTTTTTCACAGAAAGGGGAG
GATTCTTTTAAAATTAGTCTACATAATTTGAACCTCTTTAAGGAATGTCT
CCTTAACTCAAACGAGTTTTTGGTCGCTCAAGTTGACAATGCCTCATGAA
CTCTCCATAACTTAAAATTTTTGTATCCTGATAAGTTTGCATTCATTGTG
TTTGTTTGATTTATGGAGACTCAACAGTGATTGAGTTTTATGCTGCAAAA
AAAACTGAAAAAATTGAATTAGTTAATGATCATTTTCTTTAGATGGAAAA
TCTTGCAGTTTTGTTAGATTCAATTAAAGATAAATCTACATCTGATGACA
CTCTTGGGAAAATTAAAGCAGAGATCTCTTCTACATTGCTTCAGGTAACT
TTGCATTAACACAAATCATATTTTGAATTGAAATTTAAAAATTATTTTGA
AGGTATATGAAAATATCAAAAAATAAAGAATTAACAATTGACCGCAGTGT
TTCATGTTGGCACGGTGAAAATAGATTTGAAATGAAATACACAATACCCA
CATTGCCTTACACTGTATCAATTGTAAGCTACTTTCTTTGATTCTTGATA
TTTTCTTGAAGACTTTGATTCTATTTATTTCTCTGAATATATAAAACATG
CTTTAAGATTTATTCAAGTCCAGCCTTTTTGTTCGTGTTTTTTTTATTTA
AGCAAGCTAAATATATTTCAATTTTGTTTTTTAAACCTTTAATATTCAGG
CTAGCAAAACAAGGAGAAGATATTTTGGTTTCCTTTTGGAAAATAGCTAT
GATCTTGCCAAATTTGAAGAAGGCTCTTCTATGCTTAAAGGGAATGACAA
ATTAATTTGGAATATGGTTAAAGCAGCAAACAAAGATTTCTTTTCAGAAG
ACCAATTCACTTTCTACTTAACAATGATCTATCGAAAGAAAACTGGAAAA
TTAGATTTTAGAAGAAGACGTGTGCATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030418XLOC_030418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047802-exon-scaffold_136-1575043694:317867..318041TCONS_00047802-exon-scaffold_136-1575043694:317867..318041Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1575043694:313524..313688TCONS_00047802-exon-scaffold_136-1575043694:313524..313688Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1575043694:313148..313249TCONS_00047802-exon-scaffold_136-1575043694:313148..313249Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1575043694:312561..312792TCONS_00047802-exon-scaffold_136-1575043694:312561..312792Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1510915933:317867..318041TCONS_00047802-exon-scaffold_136-1510915933:317867..318041Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1510915933:313524..313688TCONS_00047802-exon-scaffold_136-1510915933:313524..313688Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1510915933:313148..313249TCONS_00047802-exon-scaffold_136-1510915933:313148..313249Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1510915933:312561..312792TCONS_00047802-exon-scaffold_136-1510915933:312561..312792Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1491911889:317867..318041TCONS_00047802-exon-scaffold_136-1491911889:317867..318041Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1491911889:313524..313688TCONS_00047802-exon-scaffold_136-1491911889:313524..313688Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1491911889:313148..313249TCONS_00047802-exon-scaffold_136-1491911889:313148..313249Clytia hemisphaericaexon
TCONS_00047802-exon-scaffold_136-1491911889:312561..312792TCONS_00047802-exon-scaffold_136-1491911889:312561..312792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:312561..318041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.6233	43.8142	13.2118	8.45919	10.7338	6.29521	4.41409	5.34102	14.98	9.75037	15.2651	11.6223	10.5069	11.1218	12.4677	12.3135	22.7295	16.9508	2.72756	4.57006	28.4804	21.9888	34.8098	31.522	2.55842	4.32347	17.8442	9.43961	19.6284	21.3701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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