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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047806 ID=TCONS_00047806|Name=TCONS_00047806|organism=Clytia hemisphaerica|type=transcript|length=2181bpRun BLAST on NCBI protein sequence of TCONS_00047806-protein >TCONS_00047806-protein ID=TCONS_00047806-protein|Name=TCONS_00047806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp SSVLIKKLITLIIFIMAEPNAKRSKTDSKGKVCLVGSGIVGRSFAVIFSKRun BLAST on NCBI transcript from alignment at scaffold_136:353439..370821- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047806 ID=TCONS_00047806|Name=TCONS_00047806|organism=Clytia hemisphaerica|type=transcript|length=17383bp|location=Sequence derived from alignment at scaffold_136:353439..370821- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_136:353439..370821- >TCONS_00047806 ID=TCONS_00047806|Name=TCONS_00047806|organism=Clytia hemisphaerica|type=CDS|length=30690bp|location=Sequence derived from alignment at scaffold_136:353439..370821- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047806 vs. Swiss-Prot (Human)
Match: CRYL1 (Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1 PE=1 SV=3) HSP 1 Score: 267.314 bits (682), Expect = 4.014e-82 Identity = 131/312 (41.99%), Postives = 208/312 (66.67%), Query Frame = 1
Query: 76 TDSKGKVCLVGSGIVGRSFAVIFSKAGYSVSLHDTVEQQLKDAMILIKAQLEDFENKGLLKDCIHKTADAAFSMISTTLDLKEAMDGAFFLQENVPENLELKQKIFKEFDALASKDMILSSSTSAIVPSKFTLNLKHTKNCLVSHPINPPALCPFIEILPSPETDQEVVEKTLSLWRKCGMSPITVKKEVAGFVLNRLQYALMGEAYRLVENGVCSPEDVNTTLTDGLAMRWSLIGPFETIHLNAPKGVKDYFERYTASMEPIIQEQTESNTVFKQETIDKIHESMCRIAP--VESIIERSKLRDSRLSALA 1005
+ + G V +VGSG++GRS+A++F+ G+ V L+D +QQ+++A+ I+ +++ E G LK + + + S+IS +++EA++GA +QE VPE+LELK+KIF + D++ +ILSSSTS ++PSK L H K C+V+HP+NPP P +E++P PET V++T +L +K G P+ V+KEVAGFVLNRLQYA++ EA+RLVE G+ SP D++ +++GL MR++ IGP ET+HLNA +G+ Y +RY+ ++ ++Q F + T +K+++ MC P E + R + RD L LA
Sbjct: 3 SSAAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSL--SVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA-EGMLSYCDRYSEGIKHVLQTFGPIPE-FSRATAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLA 310 HSP 2 Score: 262.307 bits (669), Expect = 2.389e-80 Identity = 130/310 (41.94%), Postives = 204/310 (65.81%), Query Frame = 1
Query: 1090 SKGKICIVGSGLVGRSFAVIFSKAGYSVCLYDNVEKQLKEAMILIKANLDDFENKGLLKYTAVKTADDAFSFVSTATDLKEAMNGAFFLQESVPENLELKQKVFKEFDALASDDMILSSSTSCIVPSKFTLNLKHTKNCIVSHPVNPPALCPFLEVVPSTETNQEVVEKTLSLWRECGMSPITVKKEVAGFVLNRLQYALLAESYRLVENDVCTPDDVNITLTDGLAMRWSLIGPFETGHLNAPKGIKDYYERYGPPTEAVLKEQSETVLKFKQETIDKIHESMCRIAP--VESIIERSKLRDSRLSALA 2013
+ G + IVGSG++GRS+A++F+ G+ V LYD ++Q++ A+ I+ + E G LK + + ++ S +S +++EA+ GA +QE VPE+LELK+K+F + D++ D +ILSSSTSC++PSK L H K CIV+HPVNPP P +E+VP ET V++T +L ++ G P+ V+KEVAGFVLNRLQYA+++E++RLVE + +P D+++ +++GL MR++ IGP ET HLNA +G+ Y +RY + VL+ + +F + T +K+++ MC P E + R + RD L LA
Sbjct: 5 AAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSL--SVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA-EGMLSYCDRYSEGIKHVLQTFG-PIPEFSRATAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLA 310 The following BLAST results are available for this feature:
BLAST of TCONS_00047806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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