TCONS_00047815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047815
Unique NameTCONS_00047815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047815 ID=TCONS_00047815|Name=TCONS_00047815|organism=Clytia hemisphaerica|type=transcript|length=850bp
taagaacaaactatataagaacataaggctaaCAATCGCTAAAAATGCac
ataaaatggtgaaaataagaagttgttatgaacatttttaggttttacaa
ctcaaaaatttaagaatatctgaaagcttcaaaaaatttagatgttctta
taaaaaaaacgtgtatgtaacCCGGGCACATTATGTCATCAGTACAACAT
CCAGAAGAGTTATTGACAATTGGATTTTTGGGCGTCTTTTCTGTTTGGTA
TTATTGGAGTTTATTAATCTAATTTAGGATGGTATCATTTGTAATAAAGT
GCATAAAAATTCGTAATTTAGTATGGTATCATTTGTAATAAAGTGCATAA
AAATTCGTAATTTAGTATGGTATCATTTGTAATAAAGTGCATAAAAATTC
GTAATTTAGTATGGTATCATTTGTAATAAAGTGCATAAAAATTCGTAATT
TAGTATGGTATCATTTGTAATAAAGTGCATAAAAATTCGTAATTTAGTAT
GGTATCATTTGTAATAAAGTGCATAAAAATTCGTAATTTAGTATGGTATC
ATTTGTAATAAAGTGCATAAAAATTCGTAATTTAGTATGGTATCATTTGT
AATAAAGTGCATAAAAATTCGTAATTTAGTATGGTATCATTTGTAATAAA
GTGCATAAAAATTCGTAATTTAGTATGGTATCATTTGTAATAAAGTGCAT
AAAAATTCGTAATTTAGTATGGTATCATTTGTaataaagattataaaaat
tcacaatgtttaaaTCGTTTATGTCCGAATTTTTCTAAAAGGCTGTAATA
GAGGCCCTAGATTTTTAGAAGCTATTTTCCTTATTACGAATGGCTCACCC
Run BLAST on NCBI

transcript from alignment at scaffold_136:287662..288511

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047815 ID=TCONS_00047815|Name=TCONS_00047815|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_136:287662..288511 (Clytia hemisphaerica)
GGGTGAGCCATTCGTAATAAGGAAAATAGCTTCTAAAAATCTAGGGCCTC
TATTACAGCCTTTTAGAAAAATTCGGACATAAACGAtttaaacattgtga
atttttataatctttattACAAATGATACCATACTAAATTACGAATTTTT
ATGCACTTTATTACAAATGATACCATACTAAATTACGAATTTTTATGCAC
TTTATTACAAATGATACCATACTAAATTACGAATTTTTATGCACTTTATT
ACAAATGATACCATACTAAATTACGAATTTTTATGCACTTTATTACAAAT
GATACCATACTAAATTACGAATTTTTATGCACTTTATTACAAATGATACC
ATACTAAATTACGAATTTTTATGCACTTTATTACAAATGATACCATACTA
AATTACGAATTTTTATGCACTTTATTACAAATGATACCATACTAAATTAC
GAATTTTTATGCACTTTATTACAAATGATACCATACTAAATTACGAATTT
TTATGCACTTTATTACAAATGATACCATACTAAATTACGAATTTTTATGC
ACTTTATTACAAATGATACCATCCTAAATTAGATTAATAAACTCCAATAA
TACCAAACAGAAAAGACGCCCAAAAATCCAATTGTCAATAACTCTTCTGG
ATGTTGTACTGATGACATAATGTGCCCGGgttacatacacgtttttttta
taagaacatctaaattttttgaagctttcagatattcttaaatttttgag
ttgtaaaacctaaaaatgttcataacaacttcttattttcaccattttat
gtGCATTTTTAGCGATTGttagccttatgttcttatatagtttgttctta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030427XLOC_030427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047815-exon-scaffold_136-1491911889:287662..288511TCONS_00047815-exon-scaffold_136-1491911889:287662..288511Clytia hemisphaericaexon
TCONS_00047815-exon-scaffold_136-1510915933:287662..288511TCONS_00047815-exon-scaffold_136-1510915933:287662..288511Clytia hemisphaericaexon
TCONS_00047815-exon-scaffold_136-1575043694:287662..288511TCONS_00047815-exon-scaffold_136-1575043694:287662..288511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:287662..288511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.774865	0.485753	0.250669	0.674411	0	0	0.0711579	0.133234	0	0.173314	0.168223	0.0368611	0.0736198	0	0.0942844	0	1.45422	1.44794	0	0.123134	5.83293	4.46341	2.28457	2.30779	0.475393	1.90925	10.0937	7.69447	0.307157	0.375533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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