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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047853 ID=TCONS_00047853|Name=TCONS_00047853|organism=Clytia hemisphaerica|type=transcript|length=1096bp
GAACAAATGCGAATTACATTATACGATACAGACACTTGTTGAACTGCAAA
AGCTGTTCCCCATGGAATCAATATTAAAACATCATTATTCAGGCGATCTC
ACCTTAATTACCCCATGGTTGAAAGTTGTTGCTGAGATGAATCAGAGATG
TTAGTTTTTTTCCCAAGCAATGGGCTTGATGCCAATGATGAGATTCCTAG
CTGGGTTAGAGATAAAACTCTAGGAAATTTACTAATTCGATGTGATCCAT
CCATCTTAAAGAAGACATCTGGTATCGGTACCGTCACATTGTCAGTTAAA
GATGGTGATGAAGGACTTATTTTACGAAGTCAACCCATTTTACCTGGTGA
TTTTTTAAAAGTGCGTAGTGAGTATTATCAAATCATTGGATTTTTCCAAG
CTTATGATCAGCCTATGTACAATTCTGTAAGGTTCACAAAGAATATCAAA
AGAAATGCAAATAATGCTAATTATGACATCATCCACCAGCCTTATTTCAA
AGGCAATGTAGCAAAGTTATCATGTAAAGCCTTAACACTTCACCATGGTG
TAACTATTGATTTTAGCAAACTTGATGAAAACAACTGTGGTACATTAAAC
ATTGGATTTAAGAATGCAAGCTTTAATTTGTTGGGATTTCTAACACACGA
TGTTGCTGTTTGATTTTTACTTGTTTTGATCTTCTTGAATTGCACTCTGT
GGGATGTGGGATTTGTTTACGACTTTATTTTGCCATCATGTGAAGCTTAC
ACAGTACATAAAAACTGAAATTCACCATgatttatgtatttttgttgCTA
CAAAGCAACTGAATTTATTTTGACGGTGCATGATTTAGAGTGCGTGGCAA
CGTCTTATGAACAAACGACAGCTTATTgagcgttttttttttgtttattg
caTGTTATAGCTTTTTGTTTCTCTTGTTCACTTAAGGTTTACATACTTTT
TTCAGATCTTATATTGTTTATAAACCTCCCCTACTAGTGTATCACTTATC
TAAAatttatctttatctttttaTCTTTATCATTATCTTTTGCTTGACTT
TTAAATCTAAGTAGTCTTTTTGACTCTCTGGTCTCTAATTGATGTC Run BLAST on NCBI protein sequence of TCONS_00047853-protein >TCONS_00047853-protein ID=TCONS_00047853-protein|Name=TCONS_00047853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MLVFFPSNGLDANDEIPSWVRDKTLGNLLIRCDPSILKKTSGIGTVTLSV
KDGDEGLILRSQPILPGDFLKVRSEYYQIIGFFQAYDQPMYNSVRFTKNI
KRNANNANYDIIHQPYFKGNVAKLSCKALTLHHGVTIDFSKLDENNCGTL
NIGFKNASFNLLGFLTHDVAV Run BLAST on NCBI transcript from alignment at scaffold_138:62634..63729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047853 ID=TCONS_00047853|Name=TCONS_00047853|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_138:62634..63729 (Clytia hemisphaerica)
GACATCAATTAGAGACCAGAGAGTCAAAAAGACTACTTAGATTTAAAAGT
CAAGCAAAAGATAATGATAAAGAtaaaaagataaagataaatTTTAGATA
AGTGATACACTAGTAGGGGAGGTTTATAAACAATATAAGATCTGAAAAAA
GTATGTAAACCTTAAGTGAACAAGAGAAACAAAAAGCTATAACAtgcaat
aaacaaaaaaaaaacgctcAATAAGCTGTCGTTTGTTCATAAGACGTTGC
CACGCACTCTAAATCATGCACCGTCAAAATAAATTCAGTTGCTTTGTAGc
aacaaaaatacataaatcATGGTGAATTTCAGTTTTTATGTACTGTGTAA
GCTTCACATGATGGCAAAATAAAGTCGTAAACAAATCCCACATCCCACAG
AGTGCAATTCAAGAAGATCAAAACAAGTAAAAATCAAACAGCAACATCGT
GTGTTAGAAATCCCAACAAATTAAAGCTTGCATTCTTAAATCCAATGTTT
AATGTACCACAGTTGTTTTCATCAAGTTTGCTAAAATCAATAGTTACACC
ATGGTGAAGTGTTAAGGCTTTACATGATAACTTTGCTACATTGCCTTTGA
AATAAGGCTGGTGGATGATGTCATAATTAGCATTATTTGCATTTCTTTTG
ATATTCTTTGTGAACCTTACAGAATTGTACATAGGCTGATCATAAGCTTG
GAAAAATCCAATGATTTGATAATACTCACTACGCACTTTTAAAAAATCAC
CAGGTAAAATGGGTTGACTTCGTAAAATAAGTCCTTCATCACCATCTTTA
ACTGACAATGTGACGGTACCGATACCAGATGTCTTCTTTAAGATGGATGG
ATCACATCGAATTAGTAAATTTCCTAGAGTTTTATCTCTAACCCAGCTAG
GAATCTCATCATTGGCATCAAGCCCATTGCTTGGGAAAAAAACTAACATC
TCTGATTCATCTCAGCAACAACTTTCAACCATGGGGTAATTAAGGTGAGA
TCGCCTGAATAATGATGTTTTAATATTGATTCCATGGGGAACAGCTTTTG
CAGTTCAACAAGTGTCTGTATCGTATAATGTAATTCGCATTTGTTC Coding sequence (CDS) from alignment at scaffold_138:62634..63729 >TCONS_00047853 ID=TCONS_00047853|Name=TCONS_00047853|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_138:62634..63729 (Clytia hemisphaerica)
TCAAACAGCAACATCGTGTGTTAGAAATCCCAACAAATTAAAGCTTGCAT
TCTTAAATCCAATGTTTAATGTACCACAGTTGTTTTCATCAAGTTTGCTA
AAATCAATAGTTACACCATGGTGAAGTGTTAAGGCTTTACATGATAACTT
TGCTACATTGCCTTTGAAATAAGGCTGGTGGATGATGTCATAATTAGCAT
TATTTGCATTTCTTTTGATATTCTTTGTGAACCTTACAGAATTGTACATA
GGCTGATCATAAGCTTGGAAAAATCCAATGATTTGATAATACTCACTACG
CACTTTTAAAAAATCACCAGGTAAAATGGGTTGACTTCGTAAAATAAGTC
CTTCATCACCATCTTTAACTGACAATGTGACGGTACCGATACCAGATGTC
TTCTTTAAGATGGATGGATCACATCGAATTAGTAAATTTCCTAGAGTTTT
ATCTCTAACCCAGCTAGGAATCTCATCATTGGCATCAAGCCCATTGCTTG
GGAAAAAAACTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047853-exon-scaffold_138-1491911889:62634..63729 | TCONS_00047853-exon-scaffold_138-1491911889:62634..63729 | Clytia hemisphaerica | exon |
| TCONS_00047853-exon-scaffold_138-1510915933:62634..63729 | TCONS_00047853-exon-scaffold_138-1510915933:62634..63729 | Clytia hemisphaerica | exon |
| TCONS_00047853-exon-scaffold_138-1575043694:62634..63729 | TCONS_00047853-exon-scaffold_138-1575043694:62634..63729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:62634..63729 . |
Blast
The following BLAST results are available for this feature:
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