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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047875 ID=TCONS_00047875|Name=TCONS_00047875|organism=Clytia hemisphaerica|type=transcript|length=5048bpRun BLAST on NCBI protein sequence of TCONS_00047875-protein >TCONS_00047875-protein ID=TCONS_00047875-protein|Name=TCONS_00047875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp MGVSTTCTTTYEKLKISVPDCTYLMQLYIYKNIQFSEALIKRAENLGFKARun BLAST on NCBI transcript from alignment at scaffold_139:416565..427071+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047875 ID=TCONS_00047875|Name=TCONS_00047875|organism=Clytia hemisphaerica|type=transcript|length=10507bp|location=Sequence derived from alignment at scaffold_139:416565..427071+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_139:416565..427071+ >TCONS_00047875 ID=TCONS_00047875|Name=TCONS_00047875|organism=Clytia hemisphaerica|type=CDS|length=17622bp|location=Sequence derived from alignment at scaffold_139:416565..427071+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047875 vs. Swiss-Prot (Human)
Match: HAOX1 (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 4.655e-73 Identity = 119/259 (45.95%), Postives = 183/259 (70.66%), Query Frame = 3
Query: 663 GTCMGVSXXXXXXYEKLKISVPDCTYLMQLYIYKNIQFSEALIKRAENLGFKAILLTVDAPTIGNRIADVKNKFGIASSMKFENFK-GLLSHTNES-------LKSYVQSNFKSSLSWDDLKWLRSVTTLPIYLKGIMTREDAGKCLDHDVQGIIVSNHGGRQLDGVPATIDVLTEVVQAVGHRIPVYIDGGIRSGSDVFKALALGANGVFIGRPVVYGLSYNGSKGVQEVLQHITDELKSIMRLTGCRRISDINSTLI 1415
GT M +S+ T++ E++ + P+ +QLYIYK+ + ++ L+++AE +G+KAI +TVD P +GNR+ DV+N+F + ++ +NF+ LS + E L +YV S+SW+D+KWLR +T+LPI KGI+ +DA + + H + GI+VSNHG RQLDGVPATIDVL E+V+AV ++ V++DGG+R G+DV KALALGA VF+GRP+V+GL++ G KGVQ+VL+ + +E + M L+GC+ + I+ TL+
Sbjct: 102 GTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360 HSP 2 Score: 111.309 bits (277), Expect = 1.864e-25 Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 3
Query: 1815 IKKVKSEARLPVLITGVMSKDDALECLDYQPDGIIITCQNT--IDQLTA-IDALPEIADVIKRRIPIYLYGGIRKGTDIIKALARGASKVFVKEPLLWAYSYKGSSGTLKALEILNSEFRRSMYLAGCKDFDAIKPSLVVSEQYSFNK 2249
IK ++ LP++ G++ DDA E + + +GI+++ +D + A ID LPEI + ++ ++ ++L GG+RKGTD++KALA GA VFV P++W +++G G LEIL EFR +M L+GC++ I +LV + +K
Sbjct: 222 IKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLAVSK 369 The following BLAST results are available for this feature:
BLAST of TCONS_00047875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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