TCONS_00047877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047877
Unique NameTCONS_00047877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047877 ID=TCONS_00047877|Name=TCONS_00047877|organism=Clytia hemisphaerica|type=transcript|length=4647bp
TTCATGACGTGTAAATAAGATGGACAAaccgttggcaaaatataagatag
gagaaaaaagaatcaaaaagacaatgaaattatgtttttgtcattttgtc
ttatttatagcgtaattgctgtttttaatgattttttgaaatttcgacat
ggaaaaaaagtcagttttttggaaataactttcgaactactttttcaaat
ttaatgtataatagctcaaaattcaagttagagcatcctctatacaataa
aaaaataatgaacgaaaaatataaatcctggagctcacaatatctcgaca
aacctgtatacttttttttggtgcacccggtatatcaATCAAAACTCTTT
TAAATGATTATTTTAAGCTGCTGCTGCCAAAGGGACTTGCATGGGAGTCA
GTACTACATGTACTACAACTTatgagaaattaaaaatttctgTTCCTGAC
TGCACTTACTTGATGCAACTAtacatttacaaaaatatacaattcTCTGA
AGCACTTATTAAGAGAGCCGAAAATCTTGGCTTCAAAGCTATATTATTGA
CAGTGGATGCACCTACCATTGGAAATCGGATTGCTGacgtgaaaaataaa
tttggtaTTGCGAGCAgtatgaaatttgaaaatttcaagggGCTGCTATC
ACACACAAATGAAAGtctcaaaagttatgttcaaagtAATTTTAAAAGTA
GCCTGAGTTGGGATGATTTGAAATGGCTACGTTCAGTTACTACCCTGCCA
ATTTATTTAAAAGGTATAATGACAAGAGAAGATGCAGGGAAATGTTTAGA
CCATGATGTCCAAGGTATCATTGTTTCTAATCATGGTGGAAGGCAACTCG
ATGGTGTACCAGCTACTATCGATGTACTAACAGAAGTGGTTCAAGCAGTT
GGTCACCGAATACCAGTTTATATTGATGGTGGTATTCGATCAGGAAGTGA
TGTGTTCAAAGCTCTGGCATTGGGTGCGAATGGTGTTTTCATCGGGCGCC
CAGTAGTTTATGGTTTGTCGTATAATGGCAGTAAAGGGGTACAAGAGGTC
TTGCAACATATAACAGATGAGCTGAAATCTATCATGAGGCTAACTGGTTG
TAGAAGGATTAGCGACATCAATTCAACACTGATATACCATGAAAGTCAAT
TTGGAATTTATTCCAAGCCCAAAATTGTGCGGTTACGACTACGACCGCGA
CGTTTGTGTGGATTACCTCCTTTCGAAAGAATGAATGATTTGATGCCGAT
TTGTTTATTAGACCATGAAGATACACATGAAATGATATCCATATGTAATG
TCAAAGAAGCTTGTTatttggaaatcgaaaatgaaaagGTTGACAAAGAG
AAGCTTGACAAACGAAAATACAACGGATTGGTGATAGATATTCGTCACAG
TAATTTCAACATGATAAAGAAAGTGAAATCAGAAGCACGGCTACCAGTCC
TAATAACAGGTGTTATGAGCAAAGATGATGCATTAGAATGTCTTGATTAT
CAACCTGATGGCATCATTATAACATGTCAAAATACTATAGATCAATTGAC
TGCGATTGATGCATTGCCAGAAATTGCAGATGTGATCAAACGGAGAATAC
CAATATACCTATACGGTGGCATACGCAAAGGAACAGATATCATCAAGGCA
CTTGCTCGTGGTGCTTCTAAAGTATTTGTCAAGGAACCATTGTTATGGGC
TTATTCTTATAAGGGATCATCGGGTACACTTAAAGCGCTAGAAATCTTGA
ACTCTGAATTCCGAAGATCTATGTATCTGGCAGGctgcaaagattttgat
gctATCAAACCATCGCTGGTCGTAAGTGAACAATATTCTTTCAACAAAAG
TGCAAATTTATCGAAGTACTAATCCAGTGACATCAGAACTCCATGATGTC
TAATAAAAGGATTCCCCAAAATGATATTATATTCTTCTGTTTTATAAGGA
ACTTGCTTTGGTAAACGGTGCtcttgtacacgtttttttaataagaatat
cagTAATGTACTTTgactgagggtcaagtattcttaagaaattgccaaaa
ttccAGGTGAAATATTCGTAACGTATTCTTATtatttcagagaaaaattt
cctttttagaCAACTTAAGTGAGTAGTTCTAATATACGTATACATACACA
AAAGAAAGTACACTATATCTCTTTTGttaattttcaccctgatattctta
tagaagatattcttgtaaaaaaagaagcgtgtattCTGATGCATTTAGTG
GGACTATGTATTTCATTCATTATGTGAAATTATTGATACATTTCTTACAC
ATTTTCTtattcagatttttttaaactcgTTTTGATTGATTATAAATTGT
ACAATTTTTTAAACTGTAAATAATGATAGATTTAGaattaaaatttatga
aatatcAAATAATACTCAACCTCCTAATTTGCGATTTATCTTGTTGCTTT
ATATTGGCCCTATATTATTCTGAAAGTTGCCTTTACtaaccaaaaaaatt
gaattgcaGTTACCTGAAAGTCGATTAATAACACTTACTCGATTTAGAAC
GTTGTTTTTACATTCAGGAGCAATTGAAAATGGAGTACCATACAGTTTTT
TACAGAGGAATTGAAATCCACAGGAAATAAACATGTGGTGTGAGGAGCAG
ATCTAGGAGCAAACTAATATTACTAGATTCGATCATACTGACTTGTCTTT
GGACACATTTGGATATTTGAAGATACCCCATATTCGTAGCTCCATTTAAA
CATCACAAAATAACACTCTCTTCGCTCGCCAGCTAGAGGTAAAAATATTA
GAATAATTAGTTAAACTAGTTCCAAATTATAATACTGCAAAAATAGAAAA
AAATTTAAATAATGTTTCTCAGTTATGTATGTTTTTCAATAAAAGTTGTT
AACAGGTTTTACCAAGATATTGTAGAAGGTGTTTCGGTAATTTTGAACTT
AAATATTCATCCGTGAAAGATTTCAAACATGCAAGTCTAGCTTTGTGCTT
CAAACTGGTCCCATCAATAAGTGTTGATTTTCGAAAATTAAATATACCAT
GAATATCACTTGATCTATACATTAATTCGCTCATATCCTTGTTGAAAACC
AGCTTCCAGACCCTGGGACCATCTAAAACACAATGGTAGACTTTTTCACC
ATTCGAGATGTCAAACACGAAGTAGCTTGTACTCTTGGCTTCGTATCTTT
CATTTCTTGTTGTTATGCCAACACATAacaaatatctttcaaattGCTTC
ATCAATCTATAGGCtctataatttgtataattaaCGTTAAATTCGACATT
TATGTACAGCTGAGATTCCTTCATTGTAAGAATTCCCTTTTCAGTCACCT
TTAAAAGTTGAACCATCTTGTGTGAGGTTACAGAGACAAAAACTGAGCCG
TGGACTTGAGTAAAGAATGAGAAAGATTCTGATTTCGTCTTGTCATCGCC
GACTGTGAATGAGAATAAATGTTTTCCTGAAAAGTCAAAACAACTTAACA
AAGTCAAGTGACAGTCGTAATCGTCGCGAGGTCCACCATGACCTGTAAAA
TAGATTCTTTCTGCCTCGAAATCAAGAAATATATTTGGATCAACGTGCTC
ATCATGCCAATCTAAACCTATAGAATGATCTGAAAATGAAACTTGATGTT
CCCCTATCGGTATGGTTATACTTTTATATAAAGTGATCCCTTGTTCGTCA
AATTTGATCAGAGAGACATAAATGTTGTCGTATCCGCTCTCTTCATCAAA
ACAAAGTAGGAGCACATCACCAATAGATTGACTTTTCTTGATCGCCGAAT
ATAGCAACGTTAAATCTAAAGGAAAATCTACAAGTTTATTTTGATCGTTC
ACTTCTCTTGTGCTCACTGATATTTGTTCTGAATAAGTTGGACTAGTCAC
TTCGGGAAATAAATGTCCCACAGTGCCAGAGTATAGAGTAGTCTGGAAGC
CCTCGATATCCCAAATTGTTTCTATATTAAACCAGCGGCATGACTCATGG
TCATATAATAGGCCATCTTCTTGTGGCGATATCTCCATACAAAGTGTTAC
GCTAAGACGCTTAACTTTGCTTTCATTATCATCATAATATAGAACAGCTA
TATCAAAAAAAGGGTAGTCAGACTTTTGTTCGTCGAGAGCTGTGTAGTAT
CTATTTGTCGAATCAAAGCCATGGAAACGCCAATCAGAATACAAACGCCA
CCATTTAAGGTTTTTCTCCAGATTAGCTTCCTCCCTACGCTCAACTTCTT
TAAGTATGGAGGGTAGAAAAGATTGTTTTTGATTAGCTAGCATGCTTCAA
GCAGTCCCTTGTTTTCCCTCCAGTTTCATCAACATCANGATTGTTTTTGA
TTAGCTAACATGCTTCAAGCAGTCCCTTGTTTTCCCTCCAGTTTCATCAA
CATCTTTTCATAGACTTTCGCTCTATCATGAATCAgtgtcaaaataattt
ttcctaatGATCAAGTTAATTGCTGATTTATTACACACTTCACTAAAAGT
AAATTCTTTATAATGGATATTCAGCTCCATAACAAGGTAGATTATTCTAT
TTTAGACTAGTACACAAGAATCTGAGAAGCTTTAAAATGCGTTGATAAGC
ATTCTCGTGTCAAAAAGGGGATGGCGAAAGATTACACCATCATATAA
Run BLAST on NCBI

transcript from alignment at scaffold_139:416846..427071+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047877 ID=TCONS_00047877|Name=TCONS_00047877|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at scaffold_139:416846..427071+ (Clytia hemisphaerica)
TTCATGACGTGTAAATAAGATGGACAAaccgttggcaaaatataagatag
gagaaaaaagaatcaaaaagacaatgaaattatgtttttgtcattttgtc
ttatttatagcgtaattgctgtttttaatgattttttgaaatttcgacat
ggaaaaaaagtcagttttttggaaataactttcgaactactttttcaaat
ttaatgtataatagctcaaaattcaagttagagcatcctctatacaataa
aaaaataatgaacgaaaaatataaatcctggagctcacaatatctcgaca
aacctgtatacttttttttggtgcacccggtatatcaATCAAAACTCTTT
TAAATGATTATTTTAAGCTGCTGCTGCCAAAGGGACTTGCATGGGAGTCA
GTACTACATGTACTACAACTTatgagaaattaaaaatttctgTTCCTGAC
TGCACTTACTTGATGCAACTAtacatttacaaaaatatacaattcTCTGA
AGCACTTATTAAGAGAGCCGAAAATCTTGGCTTCAAAGCTATATTATTGA
CAGTGGATGCACCTACCATTGGAAATCGGATTGCTGacgtgaaaaataaa
tttggtaTTGCGAGCAgtatgaaatttgaaaatttcaagggGCTGCTATC
ACACACAAATGAAAGtctcaaaagttatgttcaaagtAATTTTAAAAGTA
GCCTGAGTTGGGATGATTTGAAATGGCTACGTTCAGTTACTACCCTGCCA
ATTTATTTAAAAGGTAAGAGattgatttttatttaaagaaaattaaaaga
caAATTGGTTTTTATTCTTATATATAGTaacagttttcatttttctatct
GTTTTCAGCCGCATTTAATTCTTATGGTCATGGCCTTTTATGCTTCGTCT
CTTTATCACTGCAATGTACTGCAATGtaacattttatatttttcataaat
ttattGTCAGATCCAACTTTAAAACCAATCGCCAAATCTTAAATCATCAT
ATCTCAAATATTCTTTCCGAAACTCTCTGATTTTAGGTATAATGACAAGA
GAAGATGCAGGGAAATGTTTAGACCATGATGTCCAAGGTATCATTGTTTC
TAATCATGGTGGAAGGCAACTCGATGGTGTACCAGCTACTGTAAGAGATT
TTCTCATTCCAGGTCATTCCACGGTttttcccccggggggggggggactt
aggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCGCCATTGCGCCCTCTTAAAGGGATCGAGGCTAATTTCAAAGATA
CCTCTATTGAACTATTTAGAATAAATGTTCAGCTGAATAGTGGTACTAAC
AACACTGTTTCCAGATTttgattcagattttttatttcaactgttatgtt
ttgtttcttcccATATCGTTGAGACATTCGGTTGTAGGCTTAGAACAGCT
GTAGAACAGAACAATACTCTCGACTCTTCTGTATTAGTCTCATTGACATC
CTCTCGTCCTCTCTGTAAAAGCgtcgttttaaagcttatacttgcaaaat
agtcctttcaaacctagacttcatcagttctgattttgaaccttaccgta
ggatcacataagattccgattccTGCTATAACACTCCACTTGCCACTTGA
AAACAGATGATAGTTAGCTCCGActagttgaaaaatcaaaatcaaaaaac
gcaaaaaagaagttatgttttgattatttttataatcggccaacttgttt
cattgaaaaaataaatcaaaacattacttcttttttgcgttttatgattt
gccagcttggattaattcacttttttctgccGGTATGCCCGGGAAAACTA
GCGGAATGGTCCCGGAAAAGCGCCAGTAATGCTAGAGCGggaatcggaat
cttatgtgatcctaCGGTAATCCTTGAAACGGATATCTGAAATTTATCTA
CGTTCATTATTACgtattttgaaactttagcgttctatttgttcttgtac
atctataatattgtatgacctttctagctttgaaacacattttgtggaaG
TAGAGAGNNNTCAGTGTcgaatctgacagggtatagGTTTTTCCCAGTAG
AATCTGACAGGATAggtttttcatcgaatttttcttctgacagggtctat
ttttcatcaaatttcatttctgacaggatcgacttttgaaactccagcgg
cacgtccccgtcggtcgtcaaggtcagtgcccccccttCGGGGTTTTTCC
ACTTATAATGCAGTGTAgtcaatgaaaatttgaatagtaaagggggcGAG
AAAAAGAGCAGGaaacatcgatagttggcaaatCTGGAGGGGGGACTTTA
TCTTAAACTTTATCTCAGAAATCATTTCATTGATGTTTTAAGTCTGCTTT
ACTAagcatgtttgtttacattaacccattttcgttctattttgtttagt
attccttttgcaccAAATAtttacgtttgtgtcaggttgaaattttagat
aaatttaTATGGGTATACggggggaactgatatttttcagaattttctgg
gggaaagcaaaaaaagaggggggagacTAGAAAAAGAGCGGGGAGATTTa
aagaaatcaagaatttggtgggggggacaaaccctggaggacactatgaa
acCATGCAGGTTTAATCCTTTTAGAGTGGTTTCACTCGTTagtaaaaaaa
ggtgtacacactTAAGCAAATGGACTTAAATTCAGCTTAAATAAACTTCA
AAAGACTCAAATCTGACCtaataaaataagattttcgGTTGCCTTATTTC
TTTAGCAGGAGTCTTTTTACAATGTTCTCTTCGTAAATAAGCTAGAACTG
CAGTAGATGTGCATTTCATTAATGCATTACTATAGTGTACTTGACATAAT
TAACAGATCGATGTACTAACAGAAGTGGTTCAAGCAGTTGGTCACCGAAT
ACCAGTTTATATTGATGGTGGTATTCGATCAGGAAGTGATGTGTTCAAAG
CTCTGGCATTGGGTAAGCATCCAATACCGAGACTATAATTTTTGGCCTAA
CAATGATACACTATACATAGATATATGCATTTGAAGTCGAACTATAAAAA
CTGACCATTTCGAAAAGTATCCACCTCCAAGGAGTGAATGggatttgata
tgaaattttaaATACTGGATGATTTGGAAATTGCGGTAGTTTTGTTGGTA
TTGTCTTTTAGTTTTTATCATGAAGATTTCATAAATTCATATCAATGGTC
ACTTTTTATATTCTTTAATGTTGTATAGCCATACATGTCAAAGCCTAATC
TAGACTTTCAGTGATTTGTTGCTTGATCTAATATTTCTAATAATGTTTCT
TTCCTAGGTGCGAATGGTGTTTTCATCGGGCGCCCAGTAGTTTATGGTTT
GTCGTATAATGGCAGTAAAGGGGTACAAGAGGTCTTGCAACATATAACAG
ATGAGCTGAAATCTATCATGAGGCTAACTGGTAAGGATGAGTACTAAGAA
TTTCAATTtatacacccctttctcgcagCCCCGTGAAACTTTTTCCCCAA
CGGGGAtaaaagtttttattgaaatctcaatgggaatagaaattctattg
gtccaaaggttaaaaaatccagtgaggatggcttcggagtgcaattttca
aacattgaatttcgaatcgGGATGAAGTTAAAAtttcccagcgggtctgt
gacaaagGGGTGTATTAATTCATAATTGCATGCAATAGtttgaaaaattg
tttcattTCTTCTACTCAAAGATAGTGTATCTTATCATCATTCAACTTTA
GGTTGTAGAAGGATTAGCGACATCAATTCAACACTGATATACCATGAAAG
TCAATTTGGAATTTATTCCAAGCCCAAAATTGTGCGGTAAGTGGTAACAG
ATATTACAGCTACTAAAAATTTCGAGTATATTAAGTTGCATTtgctaaat
aaaataaattcaaattgaCTCCTAACATAAAAGACATTATCTATGCACGC
CTTTTGGCTCAGAATGTATTTTCAAAACGCTTTATAAGTATTACTTTTTG
GATTCTTGATTTTTCAAGATatatgaattttaaattttaaattgaatTGA
CTTCAGGCATTGGAAGCTTACTCCAGAAGCTCCAATATGTGTTGCAGACA
TCAAGGAAGGTGCAAAACAATATGGCTTTCCGATAGATGAAGATATCGAA
AGGATTTATGAAGAAGCTTTTCAAAGGTTTGAAGAAAATAATTAAACAAA
TCAACAAAGGTTAACTTCAAAAGGTTTCCAAAAGTATCGATAAAGATAAT
ATTTTCGgaattattttgaattcatttaatTGATGTGGATATTTTTGGCT
ATAGTAGAACTAAATCGAAAGCTTCATCGAActtgttctttctttttcaa
caaaGGTTACGACTACGACCGCGACGTTTGTGTGGATTACCTCCTTTCGA
AAGAATGAATGATTTGATGCCGATTTGTTTATTAGACCATGAAGATACAC
ATGAAATGATATCCATATGTAATGTCAAAGGTAATAACCTTACTCGCTTT
TTACTGTACTTTATCCAACACCATATTTATCTACATAGTTGAAAGGTTTC
ACCACAAAATTATTAActcttcaaattaaaaaggtTTTCAATAAAATGGC
TTTATATAATAAAGTAGAGCCTCTTTAGCTCGAACTTCTAACTCAAATgt
atccttaactcgaacaagcttactccataactcgaaagtTCTTtagctcg
aacaaatttgtgtttccgTGCGTGATTGGAGAATACACTGTATTGTTTTA
GAAGCTTGTTatttggaaatcgaaaatgaaaagGTTGACAAAGAGAAGCT
TGACAAACGAAAATACAACGGATTGGTGATAGATATTCGTCACAGTAATT
TCAACATGATAAAGAAAGTGAAATCAGAAGCACGGCTACCAGTCCTAATA
ACAGGTGTTATGAGCAAAGATGATGCATTAGAATGTCTTGATTATCAACC
TGATGGCATCATTATAACATGTCAAAATACTATAGATCAATTGACTGCGG
TATATAAACTTCAAAACTCGATTAGGGCTTATTACCAAAGTATTTATATA
TTTTCTATTTGGTTTCTCTCGAATACCGAATAGTTTGTCGAAATCGTACT
TAGGGAAAATGTCCTCTACTCAACTCGACTGATAACTGGGTCAAAGATGA
GTTTATTCTATTGGAAATTGAGTCTTTGGTATATGTCTTAGTACTATGTA
TTTTGTATTCCACTATCATTTGCTTCAGATTGATGCATTGCCAGAAATTG
CAGATGTGATCAAACGGAGAATACCAATATACCTATACGGTGGCATACGC
AAAGGAACAGATATCATCAAGGCACTTGCTCGTGGTGCTTCTAAAGTATT
TGTCAAGGAACCATTGTTATGGGCTTATTCTTATAAGGTTTGATCCATTT
TCAattactacacgttttttataagagcattcataattttttatgtcttt
ggatgttttttacattttgagTTTAATGCCTAATAATGTTCTTAATGTTt
gtattttaccattttgtgatgattctttccatttttctaggaaattgggt
gttttggagtccgcggaggcttaaaatattcttaacttgttaaTACTTTG
GCCATCGAAGAATTATACTTTTACATTATTGGTATTTTTGTTTTACTGTA
CATGACTATTTCCCCCCTCGTTCTTACTTATTTATACATCATTACAGAGT
CACTCCCTCTTTTCGTTTAAGGGATCATCGGGTACACTTAAAGCGCTAGA
AATCTTGAACTCTGAATTCCGAAGATCTATGTATCTGGCAGGTATAAACT
TTTATTAAAAGCATTTGGCTTCAAACTCGATCTTGTTGGTAAGCTGGGGT
TTAGCACTGTGACTTCTTTTGCCAAAGTGTctgttcaaaattttgattct
ttaATCATTAGATTTATAATTTTGTCTCCTTTAAAGAAGATGAATTGTCT
TGAAGTACCTATCGGCCATTCTTGCTTTGCCCCTCTATACGTCGGCCCAT
AATCCGCCACTGtcatttaaaggaagaaattttggcgggattttaatttg
gcggatggccgaaaaaaaattttcagagggagtttaatttggcgtttgca
ggatatttttggccaaaatcgtTATCAAATGAGCACCAATTTGGGGAATg
cgttaaataaaataaatttcgcgggaatttaactTGGCAGATGGagccaa
aaataaattttagttgGAACTTAATTTGTCGGATTTTGgcgaaattcgcc
aaatccgccatATTTTCttaccgccaaaatttcttcctttaaaggtAATA
ATGCCAATTGAGCCTTAATAAAGCCAAAACCTATGAAAGTGGCTGAATTG
TCAGCTAAATAGTCAAGATAaactgaaattttcattaaatctCTCGAACT
TCGTTGGTAATTTTTTGAAGACTTCATTAAAAACTAGCCTTGTGTTTACC
ACAGGCCAAAAAATAACGCCATTAAGGGTCGGCACAAAAACAGTTGTGTT
GAAGTTTTTATAACATTCTCACATAATTGGTTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatagagatgacgcgtt
ctttagaaaaatataataaaagtttttgtttgaatagttaacgaccaatc
caatgacaaaaattcttgtaaaatgttcaacttgacccCATAAAAAGGCC
CGATAAGGTATCTGAATACTGTATCATTGAAACTTAAAAATATTATACTG
CTATGTTTTCAGGctgcaaagattttgatgctATCAAACCATCGCTGGTC
GTAAGTGAACAATATTCTTTCAACAAAAGTGCAAATTTATCGAAGTACTA
ATCCAGTGACATCAGAACTCCATGATGTCTAATAAAAGGATTCCCCAAAA
TGATATTATATTCTTCTGTTTTATAAGGAACTTGCTTTGGTAAACGGTGC
tcttgtacacgtttttttaataagaatatcagTAATGTACTTTgactgag
ggtcaagtattcttaagaaattgccaaaattccAGGTGAAATATTCGTAA
CGTATTCTTATtatttcagagaaaaatttcctttttagaCAACTTAAGTG
AGTAGTTCTAATATACGTATACATACACAAAAGAAAGTACACTATATCTC
TTTTGttaattttcaccctgatattcttatagaagatattcttgtaaaaa
aagaagcgtgtattCTGATGCATTTAGTGGGACTATGTATTTCATTCATT
ATGTGAAATTATTGATACATTTCTTACACATTTTCTtattcagatttttt
taaactcgTTTTGATTGATTATAAATTGTACAATTTTTTAAACTGTAAAT
AATGATAGATTTAGaattaaaatttatgaaatatcAAATAATACTCAACC
TCCTAATTTGCGATTTATCTTGTTGCTTTATATTGGCCCTATATTATTCT
GAAAGTTGCCTTTACtaaccaaaaaaattgaattgcaGTTACCTGAAAGT
CGATTAATAACACTTACTCGATTTAGAACGTTGTTTTTACATTCAGGAGC
AATTGAAAATGGAGTACCATACAGTTTTTTACAGAGGAATTGAAATCCAC
AGGAAATAAACATGTGGTGTGAGGAGCAGATCTAGGAGCAAACTAATATT
ACTAGATTCGATCATACTGACTTGTCTTTGGACACATTTGGATATTTGAA
GATACCCCATATTCGTAGCTCCATTTAAACATCACAAAATAACACTCTCT
TCGCTCGCCAGCTAGAGGTAAAAATATTAGAATAATTAGTTAAACTAGTT
CCAAATTATAATACTGCAAAAATAGAAAAAAATTTAAATAATGTTTCTCA
GTTATGTATGTTTTTCAATAAAAGTTGTTAACAGGTTTTACCAAGATATT
GTAGAAGGTGTTTCGGTAATTTTGAACTTAAATATTCATCCGTGAAAGAT
TTCAAACATGCAAGTCTAGCTTTGTGCTTCAAACTGGTCCCATCAATAAG
TGTTGATTTTCGAAAATTAAATATACCATGAATATCACTTGATCTATACA
TTAATTCGCTCATATCCTTGTTGAAAACCAGCTTCCAGACCCTGGGACCA
TCTAAAACACAATGGTAGACTTTTTCACCATTCGAGATGTCAAACACGAA
GTAGCTTGTACTCTTGGCTTCGTATCTTTCATTTCTTGTTGTTATGCCAA
CACATAacaaatatctttcaaattGCTTCATCAATCTATAGGCtctataa
tttgtataattaaCGTTAAATTCGACATTTATGTACAGCTGAGATTCCTT
CATTGTAAGAATTCCCTTTTCAGTCACCTTTAAAAGTTGAACCATCTTGT
GTGAGGTTACAGAGACAAAAACTGAGCCGTGGACTTGAGTAAAGAATGAG
AAAGATTCTGATTTCGTCTTGTCATCGCCGACTGTGAATGAGAATAAATG
TTTTCCTGAAAAGTCAAAACAACTTAACAAAGTCAAGTGACAGTCGTAAT
CGTCGCGAGGTCCACCATGACCTGTAAAATAGATTCTTTCTGCCTCGAAA
TCAAGAAATATATTTGGATCAACGTGCTCATCATGCCAATCTAAACCTAT
AGAATGATCTGAAAATGAAACTTGATGTTCCCCTATCGGTATGGTTATAC
TTTTATATAAAGTGATCCCTTGTTCGTCAAATTTGATCAGAGAGACATAA
ATGTTGTCGTATCCGCTCTCTTCATCAAAACAAAGTAGGAGCACATCACC
AATAGATTGACTTTTCTTGATCGCCGAATATAGCAACGTTAAATCTAAAG
GAAAATCTACAAGTTTATTTTGATCGTTCACTTCTCTTGTGCTCACTGAT
ATTTGTTCTGAATAAGTTGGACTAGTCACTTCGGGAAATAAATGTCCCAC
AGTGCCAGAGTATAGAGTAGTCTGGAAGCCCTCGATATCCCAAATTGTTT
CTATATTAAACCAGCGGCATGACTCATGGTCATATAATAGGCCATCTTCT
TGTGGCGATATCTCCATACAAAGTGTTACGCTAAGACGCTTAACTTTGCT
TTCATTATCATCATAATATAGAACAGCTATATCAAAAAAAGGGTAGTCAG
ACTTTTGTTCGTCGAGAGCTGTGTAGTATCTATTTGTCGAATCAAAGCCA
TGGAAACGCCAATCAGAATACAAACGCCACCATTTAAGGTTTTTCTCCAG
ATTAGCTTCCTCCCTACGCTCAACTTCTTTAAGTATGGAGGGTAGAAAAG
ATTGTTTTTGATTAGCTAGCATGCTTCAAGCAGTCCCTTGTTTTCCCTCC
AGTTTCATCAACATCANGATTGTTTTTGATTAGCTAACATGCTTCAAGCA
GTCCCTTGTTTTCCCTCCAGTTTCATCAACATCTTTTCATAGACTTTCGC
TCTATCATGAATCAgtgtcaaaataatttttcctaatGATCAAGTTAATT
GCTGATTTATTACACACTTCACTAAAAGTAAATTCTTTATAATGGATATT
CAGCTCCATAACAAGGTAGATTATTCTATTTTAGACTAGTACACAAGAAT
CTGAGAAGCTTTAAAATGCGTTGATAAGCATTCTCGTGTCAAAAAGGGGA
TGGCGAAAGATTACACCATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030470XLOC_030470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047877-exon-scaffold_139-1491911889:416846..417608TCONS_00047877-exon-scaffold_139-1491911889:416846..417608Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:416846..417608TCONS_00047877-exon-scaffold_139-1510915933:416846..417608Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:416846..417608TCONS_00047877-exon-scaffold_139-1575043694:416846..417608Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:417882..417985TCONS_00047877-exon-scaffold_139-1491911889:417882..417985Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:417882..417985TCONS_00047877-exon-scaffold_139-1510915933:417882..417985Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:417882..417985TCONS_00047877-exon-scaffold_139-1575043694:417882..417985Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:420202..420307TCONS_00047877-exon-scaffold_139-1491911889:420202..420307Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:420202..420307TCONS_00047877-exon-scaffold_139-1510915933:420202..420307Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:420202..420307TCONS_00047877-exon-scaffold_139-1575043694:420202..420307Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:420653..420775TCONS_00047877-exon-scaffold_139-1491911889:420653..420775Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:420653..420775TCONS_00047877-exon-scaffold_139-1510915933:420653..420775Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:420653..420775TCONS_00047877-exon-scaffold_139-1575043694:420653..420775Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:421097..421181TCONS_00047877-exon-scaffold_139-1491911889:421097..421181Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:421097..421181TCONS_00047877-exon-scaffold_139-1510915933:421097..421181Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:421097..421181TCONS_00047877-exon-scaffold_139-1575043694:421097..421181Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:421701..421825TCONS_00047877-exon-scaffold_139-1491911889:421701..421825Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:421701..421825TCONS_00047877-exon-scaffold_139-1510915933:421701..421825Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:421701..421825TCONS_00047877-exon-scaffold_139-1575043694:421701..421825Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:422097..422344TCONS_00047877-exon-scaffold_139-1491911889:422097..422344Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:422097..422344TCONS_00047877-exon-scaffold_139-1510915933:422097..422344Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:422097..422344TCONS_00047877-exon-scaffold_139-1575043694:422097..422344Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:422574..422732TCONS_00047877-exon-scaffold_139-1491911889:422574..422732Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:422574..422732TCONS_00047877-exon-scaffold_139-1510915933:422574..422732Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:422574..422732TCONS_00047877-exon-scaffold_139-1575043694:422574..422732Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:423067..423136TCONS_00047877-exon-scaffold_139-1491911889:423067..423136Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:423067..423136TCONS_00047877-exon-scaffold_139-1510915933:423067..423136Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:423067..423136TCONS_00047877-exon-scaffold_139-1575043694:423067..423136Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1491911889:424208..427071TCONS_00047877-exon-scaffold_139-1491911889:424208..427071Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1510915933:424208..427071TCONS_00047877-exon-scaffold_139-1510915933:424208..427071Clytia hemisphaericaexon
TCONS_00047877-exon-scaffold_139-1575043694:424208..427071TCONS_00047877-exon-scaffold_139-1575043694:424208..427071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:416846..427071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.809207	1.03095e-09	0.135903	0	0.859499	1.27526e-09	3.06209	1.10436	2.40916	2.73618	0.159384	0.442692	0.848718	0	0.467527	0.0911612	1.21486	2.41485	5.365e-06	0.43969	0.291778	0.727533	1.00711	0	0.798398	0.0370703
Blast
[Close]
BLAST of TCONS_00047877 vs. Swiss-Prot (Human)
Match: HAOX1 (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.648e-73
Identity = 119/259 (45.95%), Postives = 183/259 (70.66%), Query Frame = 1 
Query:  382 GTCMGVSXXXXXXYEKLKISVPDCTYLMQLYIYKNIQFSEALIKRAENLGFKAILLTVDAPTIGNRIADVKNKFGIASSMKFENFK-GLLSHTNES-------LKSYVQSNFKSSLSWDDLKWLRSVTTLPIYLKGIMTREDAGKCLDHDVQGIIVSNHGGRQLDGVPATIDVLTEVVQAVGHRIPVYIDGGIRSGSDVFKALALGANGVFIGRPVVYGLSYNGSKGVQEVLQHITDELKSIMRLTGCRRISDINSTLI 1134
            GT M +S+  T++ E++  + P+    +QLYIYK+ + ++ L+++AE +G+KAI +TVD P +GNR+ DV+N+F +   ++ +NF+   LS + E        L +YV      S+SW+D+KWLR +T+LPI  KGI+  +DA + + H + GI+VSNHG RQLDGVPATIDVL E+V+AV  ++ V++DGG+R G+DV KALALGA  VF+GRP+V+GL++ G KGVQ+VL+ + +E +  M L+GC+ +  I+ TL+
Sbjct:  102 GTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360

HSP 2 Score: 110.923 bits (276), Expect = 2.086e-25
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 1 
Query: 1414 IKKVKSEARLPVLITGVMSKDDALECLDYQPDGIIITCQNT--IDQLTA-IDALPEIADVIKRRIPIYLYGGIRKGTDIIKALARGASKVFVKEPLLWAYSYKGSSGTLKALEILNSEFRRSMYLAGCKDFDAIKPSLVVSEQYSFNK 1848
            IK ++    LP++  G++  DDA E + +  +GI+++      +D + A ID LPEI + ++ ++ ++L GG+RKGTD++KALA GA  VFV  P++W  +++G  G    LEIL  EFR +M L+GC++   I  +LV     + +K
Sbjct:  222 IKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLAVSK 369
The following BLAST results are available for this feature:
BLAST of TCONS_00047877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HAOX11.648e-7345.95Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
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