TCONS_00047879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047879
Unique NameTCONS_00047879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047879 ID=TCONS_00047879|Name=TCONS_00047879|organism=Clytia hemisphaerica|type=transcript|length=1226bp
tttttaagatttttttccattttttcgttTCGTGAAAAAAATGGTTACAG
AAAGagaaggaaaatgaaatttatGAACTGAGAATGTTTTTGCTTGCAGA
TGTAGACtttctagatttttttcaatcagtgaaaagaaaggttttaaaaG
TCAAGGACCATGGGCTTTACTCGAAGCACTTTAACAACAGAACTATTGCG
AAGGGACGAAATCGATTCATCATTTCATGATCCCTACATATTAAATGGTT
ACCGCCCACCTGATAAAGGCGTTTGGAGGACTCTTCAATACTCGCTGAAC
AGTCAATGCAATGAAAGTTTCAACACATGGTCTCATGCCATCGCTTGTGT
ATATTTCATGGCTCGTTTCTACCATGCTTTCAAAGGACATTGGCAAGATC
CATTATATTATCCACTAATGAGCCTTTCTATTGGTATTCTAGCCGTCTTT
TCAATGAGCACTTTGGCACACGCGTTAAACAGTCTATCAAAGAAGACACG
TAACAGATgcttcttttttgattatgctGGAATCAGTATTTATGGTCTGG
GATCAGGACAAGTGATGTATTTTTACTGCAGAAAACTTGGAACTTCTGAG
GATTCAACGTCGTTGTATTTGTTTCTAACTGCATCTCTGGCAACTTCAGT
TATCACCAATATCCTAATGTGCTCTACCAGACATCGCTGGTGTCAATCTA
AAGTGTTGTACAGAACGGTTTCATGCTTAATGCCATTTTTAGTCAACTCA
TTACCGTATTTTTATAGACTTTCCTGCTGTGGAGAGTTAGCTGATAATTG
TGACGTAACACATCTTCGGATCTATCTTAAGCACGTGCTTTTCTTATTAT
TGACGGCACTTTCGAATGTGTTCAAGTTACCTGAAAGACGTTATCCAGGT
CGTTTTGACGCCCTTGGACAAAGTCACCATTTTGTACATGTTTTCATTGC
ATTAGCCTGTGAAGATATGtttgaattttcattcaaaGAGATGGGAAGAC
GCGCTAGTGTTATTCCAATGAACTCGATAACACCTGATTTTTATAATAGT
ATCTTGTTTACGTCGGCAGGTGTTTTGGGTAATTTGTTGATTGCCATTTT
CTTTAATAATGATGCTGAGGCTACCAAAGAAAGGTTGAAAGAACATTGAG
AGTGGAAACTCTTTTTGAATTTCCGATCTTTTTCCTTCATTTGTTTCAta
gttgaaaagatatttatgTGTGGTGA
Run BLAST on NCBI

protein sequence of TCONS_00047879-protein

>TCONS_00047879-protein ID=TCONS_00047879-protein|Name=TCONS_00047879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MGFTRSTLTTELLRRDEIDSSFHDPYILNGYRPPDKGVWRTLQYSLNSQC
NESFNTWSHAIACVYFMARFYHAFKGHWQDPLYYPLMSLSIGILAVFSMS
TLAHALNSLSKKTRNRCFFFDYAGISIYGLGSGQVMYFYCRKLGTSEDST
SLYLFLTASLATSVITNILMCSTRHRWCQSKVLYRTVSCLMPFLVNSLPY
FYRLSCCGELADNCDVTHLRIYLKHVLFLLLTALSNVFKLPERRYPGRFD
ALGQSHHFVHVFIALACEDMFEFSFKEMGRRASVIPMNSITPDFYNSILF
TSAGVLGNLLIAIFFNNDAEATKERLKEH
Run BLAST on NCBI

transcript from alignment at scaffold_139:433970..435786+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047879 ID=TCONS_00047879|Name=TCONS_00047879|organism=Clytia hemisphaerica|type=transcript|length=1817bp|location=Sequence derived from alignment at scaffold_139:433970..435786+ (Clytia hemisphaerica)
tttttaagatttttttccattttttcgttTCGTGAAAAAAATGGTTACAG
AAAGagaaggaaaatgaaatttatGAACTGAGAATGTTTTTGCTTGCAGA
TGTAGACtttctagatttttttcaatcagtgaaaagaaaggttttaaaaG
TCAAGGGTATGTAATTTCTATTGCTTTTTTTGAGTGACGAGTCCTAAGTT
TGCAgtacaaaaaactttttgaaacgcCTGTGGgtttttttgtgattctg
tACCCATATCTTAAAGGTCAAATTCCATGATTTACTAAAGTTAAGGCCTT
TTTTGAACCAATTCTACTAGACTAAAACTCTTTTTGCTAATTAAAGCAGT
AGTTTCCAAAGTGATTTATGGCTTTACAAATACTTCTCATGAGTATGTAA
TTAAGATTGATATTGTCATTCGTGAGATTACGAGTTATTTGATTGAGAAA
GTCGTGTTTATGCTCTTGTGTGTTTTGATCGAAAAAGGAactattatttt
gcagatttgTTTTACGAAAAAGTTTGAAGAGATAATCAATAATAATCGGA
AGTCTTATTTTGCAGCCAGAAATTTGCTGCCAAGTTTTCCGCCAAGTTTT
CCGCCTatgatttcattttgaaaaatgactgtGCAATGTCAAGTGTAGAG
ATGGTAgatattttgatatatttcttcattttgttattttcaGACCATGG
GCTTTACTCGAAGCACTTTAACAACAGAACTATTGCGAAGGGACGAAATC
GATTCATCATTTCATGATCCCTACATATTAAATGGTTACCGCCCACCTGA
TAAAGGCGTTTGGAGGACTCTTCAATACTCGCTGAACAGTCAATGCAATG
AAAGTTTCAACACATGGTCTCATGCCATCGCTTGTGTATATTTCATGGCT
CGTTTCTACCATGCTTTCAAAGGACATTGGCAAGATCCATTATATTATCC
ACTAATGAGCCTTTCTATTGGTATTCTAGCCGTCTTTTCAATGAGCACTT
TGGCACACGCGTTAAACAGTCTATCAAAGAAGACACGTAACAGATgcttc
ttttttgattatgctGGAATCAGTATTTATGGTCTGGGATCAGGACAAGT
GATGTATTTTTACTGCAGAAAACTTGGAACTTCTGAGGATTCAACGTCGT
TGTATTTGTTTCTAACTGCATCTCTGGCAACTTCAGTTATCACCAATATC
CTAATGTGCTCTACCAGACATCGCTGGTGTCAATCTAAAGTGTTGTACAG
AACGGTTTCATGCTTAATGCCATTTTTAGTCAACTCATTACCGTATTTTT
ATAGACTTTCCTGCTGTGGAGAGTTAGCTGATAATTGTGACGTAACACAT
CTTCGGATCTATCTTAAGCACGTGCTTTTCTTATTATTGACGGCACTTTC
GAATGTGTTCAAGTTACCTGAAAGACGTTATCCAGGTCGTTTTGACGCCC
TTGGACAAAGTCACCATTTTGTACATGTTTTCATTGCATTAGCCTGTGAA
GATATGtttgaattttcattcaaaGAGATGGGAAGACGCGCTAGTGTTAT
TCCAATGAACTCGATAACACCTGATTTTTATAATAGTATCTTGTTTACGT
CGGCAGGTGTTTTGGGTAATTTGTTGATTGCCATTTTCTTTAATAATGAT
GCTGAGGCTACCAAAGAAAGGTTGAAAGAACATTGAGAGTGGAAACTCTT
TTTGANTGAGGCTACCAAAGAAAGGTTGAAAGAACATTGAGAGTGGAAAC
TCTTTTTGAATTTCCGATCTTTTTCCTTCATTTGTTTCAtagttgaaaag
atatttatgTGTGGTGA

Coding sequence (CDS) from alignment at scaffold_139:433970..435786+

>TCONS_00047879 ID=TCONS_00047879|Name=TCONS_00047879|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_139:433970..435786+ (Clytia hemisphaerica)
ATGGGCTTTACTCGAAGCACTTTAACAACAGAACTATTGCGAAGGGACGA
AATCGATTCATCATTTCATGATCCCTACATATTAAATGGTTACCGCCCAC
CTGATAAAGGCGTTTGGAGGACTCTTCAATACTCGCTGAACAGTCAATGC
AATGAAAGTTTCAACACATGGTCTCATGCCATCGCTTGTGTATATTTCAT
GGCTCGTTTCTACCATGCTTTCAAAGGACATTGGCAAGATCCATTATATT
ATCCACTAATGAGCCTTTCTATTGGTATTCTAGCCGTCTTTTCAATGAGC
ACTTTGGCACACGCGTTAAACAGTCTATCAAAGAAGACACGTAACAGATg
cttcttttttgattatgctGGAATCAGTATTTATGGTCTGGGATCAGGAC
AAGTGATGTATTTTTACTGCAGAAAACTTGGAACTTCTGAGGATTCAACG
TCGTTGTATTTGTTTCTAACTGCATCTCTGGCAACTTCAGTTATCACCAA
TATCCTAATGTGCTCTACCAGACATCGCTGGTGTCAATCTAAAGTGTTGT
ACAGAACGGTTTCATGCTTAATGCCATTTTTAGTCAACTCATTACCGTAT
TTTTATAGACTTTCCTGCTGTGGAGAGTTAGCTGATAATTGTGACGTAAC
ACATCTTCGGATCTATCTTAAGCACGTGCTTTTCTTATTATTGACGGCAC
TTTCGAATGTGTTCAAGTTACCTGAAAGACGTTATCCAGGTCGTTTTGAC
GCCCTTGGACAAAGTCACCATTTTGTACATGTTTTCATTGCATTAGCCTG
TGAAGATATGtttgaattttcattcaaaGAGATGGGAAGACGCGCTAGTG
TTATTCCAATGAACTCGATAACACCTGATTTTTATAATAGTATCTTGTTT
ACGTCGGCAGGTGTTTTGGGTAATTTGTTGATTGCCATTTTCTTTAATAA
TGATGCTGAGGCTACCAAAGAAAGGTTGAAAGAACATTGAATGGGCTTTA
CTCGAAGCACTTTAACAACAGAACTATTGCGAAGGGACGAAATCGATTCA
TCATTTCATGATCCCTACATATTAAATGGTTACCGCCCACCTGATAAAGG
CGTTTGGAGGACTCTTCAATACTCGCTGAACAGTCAATGCAATGAAAGTT
TCAACACATGGTCTCATGCCATCGCTTGTGTATATTTCATGGCTCGTTTC
TACCATGCTTTCAAAGGACATTGGCAAGATCCATTATATTATCCACTAAT
GAGCCTTTCTATTGGTATTCTAGCCGTCTTTTCAATGAGCACTTTGGCAC
ACGCGTTAAACAGTCTATCAAAGAAGACACGTAACAGATgcttctttttt
gattatgctGGAATCAGTATTTATGGTCTGGGATCAGGACAAGTGATGTA
TTTTTACTGCAGAAAACTTGGAACTTCTGAGGATTCAACGTCGTTGTATT
TGTTTCTAACTGCATCTCTGGCAACTTCAGTTATCACCAATATCCTAATG
TGCTCTACCAGACATCGCTGGTGTCAATCTAAAGTGTTGTACAGAACGGT
TTCATGCTTAATGCCATTTTTAGTCAACTCATTACCGTATTTTTATAGAC
TTTCCTGCTGTGGAGAGTTAGCTGATAATTGTGACGTAACACATCTTCGG
ATCTATCTTAAGCACGTGCTTTTCTTATTATTGACGGCACTTTCGAATGT
GTTCAAGTTACCTGAAAGACGTTATCCAGGTCGTTTTGACGCCCTTGGAC
AAAGTCACCATTTTGTACATGTTTTCATTGCATTAGCCTGTGAAGATATG
tttgaattttcattcaaaGAGATGGGAAGACGCGCTAGTGTTATTCCAAT
GAACTCGATAACACCTGATTTTTATAATAGTATCTTGTTTACGTCGGCAG
GTGTTTTGGGTAATTTGTTGATTGCCATTTTCTTTAATAATGATGCTGAG
GCTACCAAAGAAAGGTTGAAAGAACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030471XLOC_030471Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047879-proteinTCONS_00047879-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047879-exon-scaffold_139-1491911889:433970..434125TCONS_00047879-exon-scaffold_139-1491911889:433970..434125Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1510915933:433970..434125TCONS_00047879-exon-scaffold_139-1510915933:433970..434125Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1575043694:433970..434125TCONS_00047879-exon-scaffold_139-1575043694:433970..434125Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1491911889:434663..435639TCONS_00047879-exon-scaffold_139-1491911889:434663..435639Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1510915933:434663..435639TCONS_00047879-exon-scaffold_139-1510915933:434663..435639Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1575043694:434663..435639TCONS_00047879-exon-scaffold_139-1575043694:434663..435639Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1491911889:435694..435786TCONS_00047879-exon-scaffold_139-1491911889:435694..435786Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1510915933:435694..435786TCONS_00047879-exon-scaffold_139-1510915933:435694..435786Clytia hemisphaericaexon
TCONS_00047879-exon-scaffold_139-1575043694:435694..435786TCONS_00047879-exon-scaffold_139-1575043694:435694..435786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:433970..435786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	1.29399	0.905952	2.24434	4.35681	0.715999	0	1.48508	0.610468	0	0.807061	0	0	1.1959	0	0	1.75992	1.12068	1.15427	3.09047	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004254AdipoR/HlyIII-related
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00047879 vs. Swiss-Prot (Human)
Match: PAQR6 (Membrane progestin receptor delta OS=Homo sapiens GN=PAQR6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.101e-25
Identity = 88/308 (28.57%), Postives = 129/308 (41.88%), Query Frame = 1 
Query:  208 EIDSSFHDPYILNGYRPPDKGVWRTLQYSLNSQCNESFNTWSHAIACVYFMARFYH--AFKGHWQDPLYYPLMSLSIGILAVFSMSTLAHALNSLSKKTRNRCFFFDYAGISIYGLGSGQVMYFYCRKLGTSEDSTSLY-LFLTASLATSVITNILMCSTRHRWCQS----KVLYRTVSCLMPFLVNSLPYFYRLSCCGELADNCDVTHLRI-YLKHVLFLLLTALSNVFKLPERRYPGRFDALGQSHHFVHVFIALACEDMFEFSFKEMGRRASVIPMNSITPDFYNSILFTSAGVLGNLLIAIFFN 1107
            ++   F +  I++GYR P       +  S     NE+ N W+H +   YF+ R        G   +P ++PL+   +        S  AH  +S+S + R+ C+F DY  +S+Y LG       Y   +  S     L+  F+ A+   S +   L C +R    +S    KVL RT +   PFL ++LP FYRL  C      C    L   +  H+   LLT       LPER  PGRFD +G SH   H+   L      E    +MG R + +           ++        GNLLI   F 
Sbjct:   14 QVPRVFWEDGIMSGYRRPTSSALDCVLSSFQ-MTNETVNIWTHFLPTWYFLWRLLALAGGPGFRAEPYHWPLLVFLLPACLYPFASCCAHTFSSMSPRMRHICYFLDYGALSLYSLGCAFPYAAY--SMPASWLHGHLHQFFVPAAALNSFLCTGLSCYSRFLELESPGLSKVL-RTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGHSHQLFHICAVLGTHFQLEAVLADMGSRRAWLATQEPALGLAGTVATLVLAAAGNLLIIAAFT 317
The following BLAST results are available for this feature:
BLAST of TCONS_00047879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAQR61.101e-2528.57Membrane progestin receptor delta OS=Homo sapiens ... [more]
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