TCONS_00047880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047880
Unique NameTCONS_00047880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047880 ID=TCONS_00047880|Name=TCONS_00047880|organism=Clytia hemisphaerica|type=transcript|length=1193bp
GAAAAAAATGGTTACAGAAAGagaaggaaaatgaaatttatGAACTGAGA
ATGTTTTTGCTTGCAGATGTAGACtttctagatttttttcaatcagtgaa
aagaaaggttttaaaaGTCAAGGACCATGGGCTTTACTCGAAGCACTTTA
ACAACAGAACTATTGCGAAGGGACGAAATCGATTCATCATTTCATGATCC
CTACATATTAAATGGTTACCGCCCACCTGATAAAGGCGTTTGGAGGACTC
TTCAATACTCGCTGAACAGTCAATGCAATGAAAGTTTCAACACATGGTCT
CATGCCATCGCTTGTGTATATTTCATGGCTCGTTTCTACCATGCTTTCAA
AGGACATTGGCAAGATCCATTATATTATCCACTAATGAGCCTTTCTATTG
GTATTCTAGCCGTCTTTTCAATGAGCACTTTGGCACACGCGTTAAACAGT
CTATCAAAGAAGACACGTAACAGATgcttcttttttgattatgctGGAAT
CAGTATTTATGGTCTGGGATCAGGACAAGTGATGTATTTTTACTGCAGAA
AACTTGGAACTTCTGAGGATTCAACGTCGTTGTATTTGTTTCTAACTGCA
TCTCTGGCAACTTCAGTTATCACCAATATCCTAATGTGCTCTACCAGACA
TCGCTGGTGTCAATCTAAAGTGTTGTACAGAACGGTTTCATGCTTAATGC
CATTTTTAGTCAACTCATTACCGTATTTTTATAGACTTTCCTGCTGTGGA
GAGTTAGCTGATAATTGTGACGTAACACATCTTCGGATCTATCTTAAGCA
CGTGCTTTTCTTATTATTGACGGCACTTTCGAATGTGTTCAAGTTACCTG
AAAGACGTTATCCAGGTCGTTTTGACGCCCTTGGACAAAGTCACCATTTT
GTACATGTTTTCATTGCATTAGCCTGTGAAGATATGtttgaattttcatt
caaaGAGATGGGAAGACGCGCTAGTGTTATTCCAATGAACTCGATAACAC
CTGATTTTTATAATAGTATCTTGTTTACGTCGGCAGGTGTTTTGGGTAAT
TTGTTGATTGCCATTTTCTTTAATAATGATGCTGAGGCTACCAAAGAAAG
GTTGAAAGAACATTGAGAGTGGAAACTCTTTTTGAATTTCCGATCTTTTT
CCTTCATTTGTTTCAtagttgaaaagatatttatgTGTGGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_139:434003..435786+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047880 ID=TCONS_00047880|Name=TCONS_00047880|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at scaffold_139:434003..435786+ (Clytia hemisphaerica)
GAAAAAAATGGTTACAGAAAGagaaggaaaatgaaatttatGAACTGAGA
ATGTTTTTGCTTGCAGATGTAGACtttctagatttttttcaatcagtgaa
aagaaaggttttaaaaGTCAAGGGTATGTAATTTCTATTGCTTTTTTTGA
GTGACGAGTCCTAAGTTTGCAgtacaaaaaactttttgaaacgcCTGTGG
gtttttttgtgattctgtACCCATATCTTAAAGGTCAAATTCCATGATTT
ACTAAAGTTAAGGCCTTTTTTGAACCAATTCTACTAGACTAAAACTCTTT
TTGCTAATTAAAGCAGTAGTTTCCAAAGTGATTTATGGCTTTACAAATAC
TTCTCATGAGTATGTAATTAAGATTGATATTGTCATTCGTGAGATTACGA
GTTATTTGATTGAGAAAGTCGTGTTTATGCTCTTGTGTGTTTTGATCGAA
AAAGGAactattattttgcagatttgTTTTACGAAAAAGTTTGAAGAGAT
AATCAATAATAATCGGAAGTCTTATTTTGCAGCCAGAAATTTGCTGCCAA
GTTTTCCGCCAAGTTTTCCGCCTatgatttcattttgaaaaatgactgtG
CAATGTCAAGTGTAGAGATGGTAgatattttgatatatttcttcattttg
ttattttcaGACCATGGGCTTTACTCGAAGCACTTTAACAACAGAACTAT
TGCGAAGGGACGAAATCGATTCATCATTTCATGATCCCTACATATTAAAT
GGTTACCGCCCACCTGATAAAGGCGTTTGGAGGACTCTTCAATACTCGCT
GAACAGTCAATGCAATGAAAGTTTCAACACATGGTCTCATGCCATCGCTT
GTGTATATTTCATGGCTCGTTTCTACCATGCTTTCAAAGGACATTGGCAA
GATCCATTATATTATCCACTAATGAGCCTTTCTATTGGTATTCTAGCCGT
CTTTTCAATGAGCACTTTGGCACACGCGTTAAACAGTCTATCAAAGAAGA
CACGTAACAGATgcttcttttttgattatgctGGAATCAGTATTTATGGT
CTGGGATCAGGACAAGTGATGTATTTTTACTGCAGAAAACTTGGAACTTC
TGAGGATTCAACGTCGTTGTATTTGTTTCTAACTGCATCTCTGGCAACTT
CAGTTATCACCAATATCCTAATGTGCTCTACCAGACATCGCTGGTGTCAA
TCTAAAGTGTTGTACAGAACGGTTTCATGCTTAATGCCATTTTTAGTCAA
CTCATTACCGTATTTTTATAGACTTTCCTGCTGTGGAGAGTTAGCTGATA
ATTGTGACGTAACACATCTTCGGATCTATCTTAAGCACGTGCTTTTCTTA
TTATTGACGGCACTTTCGAATGTGTTCAAGTTACCTGAAAGACGTTATCC
AGGTCGTTTTGACGCCCTTGGACAAAGTCACCATTTTGTACATGTTTTCA
TTGCATTAGCCTGTGAAGATATGtttgaattttcattcaaaGAGATGGGA
AGACGCGCTAGTGTTATTCCAATGAACTCGATAACACCTGATTTTTATAA
TAGTATCTTGTTTACGTCGGCAGGTGTTTTGGGTAATTTGTTGATTGCCA
TTTTCTTTAATAATGATGCTGAGGCTACCAAAGAAAGGTTGAAAGAACAT
TGAGAGTGGAAACTCTTTTTGANTGAGGCTACCAAAGAAAGGTTGAAAGA
ACATTGAGAGTGGAAACTCTTTTTGAATTTCCGATCTTTTTCCTTCATTT
GTTTCAtagttgaaaagatatttatgTGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030471XLOC_030471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047880-exon-scaffold_139-1491911889:434003..434125TCONS_00047880-exon-scaffold_139-1491911889:434003..434125Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1510915933:434003..434125TCONS_00047880-exon-scaffold_139-1510915933:434003..434125Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1575043694:434003..434125TCONS_00047880-exon-scaffold_139-1575043694:434003..434125Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1491911889:434663..435625TCONS_00047880-exon-scaffold_139-1491911889:434663..435625Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1510915933:434663..435625TCONS_00047880-exon-scaffold_139-1510915933:434663..435625Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1575043694:434663..435625TCONS_00047880-exon-scaffold_139-1575043694:434663..435625Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1491911889:435680..435786TCONS_00047880-exon-scaffold_139-1491911889:435680..435786Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1510915933:435680..435786TCONS_00047880-exon-scaffold_139-1510915933:435680..435786Clytia hemisphaericaexon
TCONS_00047880-exon-scaffold_139-1575043694:435680..435786TCONS_00047880-exon-scaffold_139-1575043694:435680..435786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:434003..435786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.612928	0.492225	0.0816458	0.239633	0.0972433	0.076843	5.84059	4.65126	5.07941	4.49209	2.87576	4.85483	12.7088	11.3894	7.76299	6.63514	3.33405	6.38062	12.6862	8.38951	5.99586	6.27422	4.68592e-09	1.81085	7.28456	4.13005	0.593256	0.263808	0.120053	0.0815436
Blast
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BLAST of TCONS_00047880 vs. Swiss-Prot (Human)
Match: PAQR6 (Membrane progestin receptor delta OS=Homo sapiens GN=PAQR6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 9.948e-26
Identity = 88/308 (28.57%), Postives = 129/308 (41.88%), Query Frame = 1 
Query:  175 EIDSSFHDPYILNGYRPPDKGVWRTLQYSLNSQCNESFNTWSHAIACVYFMARFYH--AFKGHWQDPLYYPLMSLSIGILAVFSMSTLAHALNSLSKKTRNRCFFFDYAGISIYGLGSGQVMYFYCRKLGTSEDSTSLY-LFLTASLATSVITNILMCSTRHRWCQS----KVLYRTVSCLMPFLVNSLPYFYRLSCCGELADNCDVTHLRI-YLKHVLFLLLTALSNVFKLPERRYPGRFDALGQSHHFVHVFIALACEDMFEFSFKEMGRRASVIPMNSITPDFYNSILFTSAGVLGNLLIAIFFN 1074
            ++   F +  I++GYR P       +  S     NE+ N W+H +   YF+ R        G   +P ++PL+   +        S  AH  +S+S + R+ C+F DY  +S+Y LG       Y   +  S     L+  F+ A+   S +   L C +R    +S    KVL RT +   PFL ++LP FYRL  C      C    L   +  H+   LLT       LPER  PGRFD +G SH   H+   L      E    +MG R + +           ++        GNLLI   F 
Sbjct:   14 QVPRVFWEDGIMSGYRRPTSSALDCVLSSFQ-MTNETVNIWTHFLPTWYFLWRLLALAGGPGFRAEPYHWPLLVFLLPACLYPFASCCAHTFSSMSPRMRHICYFLDYGALSLYSLGCAFPYAAY--SMPASWLHGHLHQFFVPAAALNSFLCTGLSCYSRFLELESPGLSKVL-RTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGHSHQLFHICAVLGTHFQLEAVLADMGSRRAWLATQEPALGLAGTVATLVLAAAGNLLIIAAFT 317
The following BLAST results are available for this feature:
BLAST of TCONS_00047880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAQR69.948e-2628.57Membrane progestin receptor delta OS=Homo sapiens ... [more]
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