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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047882 ID=TCONS_00047882|Name=TCONS_00047882|organism=Clytia hemisphaerica|type=transcript|length=1168bp
AACAGAATATTTGATACAATCCAAATTACCAAACAAAGAAAGACTACATA
AAAAATATAGTAAGAAAAGATTCGATTCATCTCACAATCTCTATCGAAGA
AACATAGTATCTCATTATGCTTGTGTGAATTCGATAGCATTCTCAAAGGA
CGGCGAATTATTTGTATCAGGTGGGGACGATAAACGTGTATTGCTATGGA
ACACGAGTGATCTTTGTCAAAAAGAAAAGCCAAAACCAACCATCATGAAG
AAAGAACACTATTCTAATATCTTCTCAACCGTATTCGATTGTACAGCTGA
AAATGTCTTTTCGGCAGGTAATGATCAAAAAATCATACAACACAATATTG
AGAGACGTGAAGCAGTTGGTTATTTCTTCTTTGACGATTCGATATACGCC
GTAGATTCACCACCAGATAATCCAAAATTGTTGGTAGCTTCTGGTGAAGA
TGGCACCGTCCAAGTCGTTGATGTTCGATCGCCTCTTGAACGGACCAAAT
TAGCTGCATCAAGTGGTAGCTATCATAGTGCTGTTTTTCATCCAATCAAT
TCACAATACATTGCAACCGCTAATTCATTACATGGTGTTTCACTTTGGGA
TATTCGCAAACCTCTCAAGTAAgtttataattaatttttatttagtTATT
TTACCAAGCTAGGTTGAAGCTCATATTTGCTGTACATCGGAGATGCTGAT
GTTGATGTTGGcctgttttcagaaaaagggcTACCTTCGATTTTTAATAC
AGCCTTAAAGCGACCAAGCATCTTATCGccagacttcttgaaagaaaaat
gatGAGGTGATTTTAGTAGCTGTCATTAGACTCAAGCCTGTACCTGTACG
CCTTTGTACGATGTTTAGCGGATAGTCAACTAACTTAGTTAACCTTCACT
CTAAAATATCAGACTAACATGTAAACACACTTAAAGTTCCGTTAATGAAA
TAATCATCAAACTCAAAGTTAGATTACAAAAATGCTAGCGCGGCGAGCTC
CAAGCAATCTTGCTCTTCGAAGTAAAATGAATCGCTTAATTGGCGGATAG
ACAAACACGTATACAACAACATTTACTGTAATCCCAATCATATGAAATAA
GTTCGTCACCACAAGTTTCGTCCCGGAGTTCGCTGGTTTGCCTTGTAAGT
TGGATAAGAAAATAACGA Run BLAST on NCBI transcript from alignment at scaffold_139:462437..470508+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047882 ID=TCONS_00047882|Name=TCONS_00047882|organism=Clytia hemisphaerica|type=transcript|length=8072bp|location=Sequence derived from alignment at scaffold_139:462437..470508+ (Clytia hemisphaerica)
AACAGAATATTTGATACAATCCAAATTACCAAACAAAGAAAGACTACATA
AAAAATATAGTAAGAAAAGATTCGATTCATCTCACAATCTCTATCGAAGA
AACATAGTATCTCATTATGCTTGTGTGAATTCGATAGCATTCTCAAAGGA
CGGCGAATTATTTGTATCAGGTTAGtataatttgaattattttggaTTTC
TGTTACTAGAACCATTCAAATAATATTAAATCATATTAGATATTAGATTA
AGGACCTCTGCAGGCCCAAAGTTTCAAAGCCAAATACAAGATCTATGATC
ACTAGAAAGAAATAATGCTTTGTAATACTTCTCTTGGGTCTCTCTTGGGT
CTCCGCATGTGGAAAATGCAATATGTTTTGCAACTTAAATCTGGCTGCTC
ACCTGTACAATTTTCTCCTAGTTTCAAGCTTTTTATCATTGTAACACTTA
GGTGGGGACGATAAACGTGTATTGCTATGGAACACGAGTGATCTTTGTCA
AAAAGAAAAGCCAAAACCAACCATCATGAAGAAAGAACACTATTCTAATA
TCTTCTCAACCGTATTCGATTGTACAGCTGAAAATGTCTTTTCGGCAGGT
TCGCTCAATTTATAGCTTTCATTCTTTAAATAGGCTTCTCCAGAAAAAAA
ATCCGCTGTGGCCTGACTTTGTCACTGGCAATGTTGTAATCCCTTAGGAT
ACCAGACAGTTTAGGTTTAAATTCCTTCCAAATCTTTGAGAATTTAAAAT
TATGTTACTTcaatgaaattcttttttttccagCTATTTTTTGacatacc
gggtgtcccagaaaaaagttccgctctttgaagtgaattttctcgagctc
tattaaaacttttaaataatgaatctttttgcattggaaagaggaaggat
aaacttaaattttgaggggtcatttattaaattaagtcaacttgatcaaa
agttatagcctaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAgtcaaaaaaagatgaaaaaagagGAGATcaaatcatc
ataaagaaagcaCTTCTTTTGCCAATTTATTTACGCTCAAAGTTTTTTCC
ATGCAGTtctttaacctttaccacgccttctctttgggaacttcaccccg
tgcacgccttgtctttttgggaaaaatgacagttttacactttccgtaat
aacttttgatctacttaaccgattcaaaaaaataagcctattctggaaag
cccaactattctgctttccaaaaatgttaaaataaaggattttccttTAT
CAATGGTGACACAGTAGTATTCTGCCTtagagttaaaaaaaaattcaaaa
cgcaatttgtcatatttttcaaaaatttttttaccataattttctggctc
attgtttccaccattataactacaactgctagccaaaaaatcacaatcaa
acctttactagaaaaggcacaattcatttttagaaaaccttggttttcga
gaaaatttccacgtaaatcagaggcacgtaaggcagaggccccttgaggt
aacttttatgggaaatatcactaaaaacagctaaaaatgactttcctatc
atcaaccagcatgaaagcaataaaaataacataatatatacactttgaaa
ctctttgtagccttatcagaagccttagcttgggtttcggtgacggtcga
tgacggccgacaagcctccagtcctcacccttaatgtaccgtcatactaa
agaataaggaggcagaaacttacctcaaacactgactaaactacaTACAA
GTaatacataacatttccaagcaataaaacaaaccattttccactaaata
aacataaaaagttagttacagcagtcaatgagctcataatttccaaaaga
atattctgcctgattttccagtttgttttgacagttaaaatcgaaagtag
gtggtttcaaactattgaaaatagtttgtttacattttctctttgtcata
taagacatttcccaggatttaaaggcgtctttaaggcggtagggcggctt
ttcttaaAACCGCacgaaaaacgtatatttacggcttCGGCTATAGCTTA
AAACGTAAATTTACGGcttcggcgtggtaaaggttaaggtgtctttattt
tattgttaattccttttcttttctttgtctaATTTAACGAGCTCCCATGG
GCATAATCAAGGGGCACGATGCTTTTTCGAGCTCCAAACATTCATCAAAA
TCTTACCAAGAGTTTCCaaagctttttgtgtctttgtctCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNccttcctctttccaatgcaaaaagattcattatttaaaag
ttcatagaactcgagaaaattcacttcaaagagcggaacttttttctggg
acacccggtatttTTGTATTGATTTCGAGAAAAACATTCACtaaatttct
tctttcttgtttAGGTAATGATCAAAAAATCATACAACACAATATTGAGA
GGTAATTGCCAGGGTGCGTCCATATTAGGTTCTTTTtgaactctcaaaat
aaaaatgatgaaatgcACTGCTTGATCATTGTCAGAATTATTCTACTTTT
TTTTCTGAAGCACTTTCAATGTAATTTTGGCAAACGATATCCTCCAGGAT
GCAAGTCGATtttttcaatctgcggacctAGAAGGGGGTTTGGTTAGGGC
TGTAGCttgagagtcacaatataaggggCACTCTTACCTCGTGATTTAAC
TTAAGGATCCCGGTAGGGGCACCAGTAGGGTTGGGAGCTATTTTAATTCT
GATAATTTCACGCTAAAAGTAATTGTGAATGACCATATTCTGCTGTGTCT
CGGTGGTGCAACCGGTTAGGCATTGTAAACCAAGGTatcttgcatttggt
ggttcgagccggggtagAAGACTTATTTCACCGGTACagttaaattttag
aaaaatacatAGAATTTAACAGTTAGAAatacttgagaaagtcagaataT
TAGGGTacaagataggaaagtagaaaatagggaaaaataaGAGACCATGC
ATCCTGGagaatgatatcgtttgccaaccaatTAAAGCATCATTGAAAAG
TACAGTTACTGCCTCCTCTTCATTCGAATATATCAGAGGCTAAAAAGTTG
CaataagaataaaataaaggtactaaaaatattttaatttgggGTTAaag
tagcctggagatccatgctatgatttcttattctatatactgatggcgaa
atatatagcatggtatgggctgagagtttgaatttcctaaaaacggttga
aaacatagccaatcaagttttgttattctttttatactggtcacactttc
ttagagaaagcgcaagtttcgaaatttggtttttattttagtaagtgagg
acagcgctaaattcgaatttcccactgtaaatcttttgaggcagaaatct
gcctcacaggtcatacccgtcctgtatacatcagattataaaaatacagg
acgggtctcctgtctagggTTAAAGCTCTTATTACCAACATCTTAACCCA
TATTTTTAACTCGGTTTAGTTTGTTACGACTTTTACTCTGTTAGACGTGA
AGCAGTTGGTTATTTCTTCTTTGACGATTCGATATACGCCGTAGATTCAC
CACCAGATAATCCAAAATTGTTGGTAGCTTCTGGTGAAGATGGCACCGTC
CAAGTCGTTGATGTTCGATCGCCTCTTGGTAAGCCTCCcgaatgtttcat
tttttctgttgTCGATTATTAAAGGGACAAAAGCAGTAAGATGTAAATAT
TGCGCGAACCATGTGTcattaaagaaaacaattgaaatcacgtgtccaaa
acaaacttgtaggacaattgaaacaatcaaaattagccatatttgttttt
ggacctaccccggtggggtggaggtcctataaattaacctttgtccgttc
gttcgtccgttcgtccgttcgtccgttcgctcgttcgttattagctttcc
tcgtgattggctcattattttttcttttgcacaaagatgtgtaactataa
accctcgaatgtgacggagcacgattttcgaaaaaaaaattttttaggca
aatttgggccaaaaaacggctaaaaaacgggttttttggactttgtgaaa
atttGGATCATtgactttttctgattttttgcatgaaagtagggtaccat
cataggtaaaagatggctcaggcAGATTTTTTCAAAAAAAATTTTGTTGG
CTCAAAAAACGCATGTTTATCTataagaatcactattaataagcatacat
caatgttcttagttaaattactcaatttttttatgagatagatgtttttt
ttgctcatgagggtttacttttgaagaacgtgtgtgtttagacatgaaat
tttggtttcttggcgtgtttttatagtaaaactggccaaattcgatattt
atttataagcacattatcaattacttaggtattagcttttctcgagattg
gctgttggattctttatgattttttgcacaaagatgcataactataaacc
ctcgaatgtgactgagcccgactttcgaaaaaaaagtttttttggcaaat
ttgggccaaaaaacggctataaaacaggttttttggactttgtgaaaaat
tggatcattaactttttctgattttttgcatgaaagtagggttccatcat
aggtaaaagatggctcaagcagattttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNagaatcactattaataagcatacatcaatgttcttagccaaatta
ctcaattttttgatgagatagatgttttttttgctcacaaagtcttaaat
atgaaagtatatttcaagagcatgaaattttggtttctaNNNNNNNNNNN
NNNNNNNNNNNNaacaaatgactaattttaatagatcgtcactatttgtg
ttctgaatgattgtttaatggtcacgctcacgtagatatcaattatatat
gtgttaaaatgCGTAACctggtaggtccataaaagtatcacttgttattt
tttattttacatgtgacattttttttgattttgtatcctgcTGCATAcgc
tttgtttacaaattcgtcagtacttttatgtgcCTTTAGGATCTAATGAT
TGAGTCAACGTTATTGTTGCCATtggaaatttgagaatatccagatttat
tattttgttatcaACAGACGACGAACGACCTCCAGAATCCAAGCAAATAA
CATTTTACTTCTATTGATAACGAAAATAATAGACAACTTTGTGTATGTTT
ATGTGTTACGCTTGAAAATCTGGATATGTATCGTTAACTCGGATAtttta
agcagatattcaactCCCATGATCGAACGTTCGACCTTTtttattaataa
ttttcttaattactttaacTCTTTCGAGACTGGTCCAGCTAAAATCATAC
CTGTGGGCATGATGACTTCAAAATGCGATTGCGCGCGAATTACGCTTCGT
TACGCTTGCTGTAAAAGCTCAAATGAAAGCCCTTGAATCGGCCAATCAGA
TGGCTTGATTTCCAAAGCCGTACAAAGtctagatttttttcttcacagGC
TAGAGTATCGTTGGTTTTTCTAACCTATAAATCACAGGCTAGAATATcaa
caaactttgaaaaaaaacaaaatggcgtctCGTGCAAAGCCTGTGATCAA
AAAGAGCTACGgccttcattttttcttcttcttcttgccAAATTAATTTT
GAACAACTTTGTAGGCTACAAAATATACACAAACCTTACACAATTCCCTG
GAAATaggaaaataaatcaaaattttcgcaattttcgaaaaatttcgctA
CTTtggccgccattatggatttccaccattttgaaaaaaaaaagcaaaaa
aattttttttttaatttctaaatCTTTGAAGTCTTGCTNTTtggccgcca
ttatggatttccaccaaaaatttttttttttttaaatttctaaatctTTA
AAGTCTTGCTGATCTTTTGAGGGGTGAATGATATGATGAAAACGTCTCAA
TCCCAAGATATAGCATTTTTAAAAAGGTATATGAAAAACAGCGAAAATAG
GGCAGTCTCGAAAGAGCTCTgcacatacccaatttttcgattttacacca
acttaaatggccatttctgcattttaaaaagattaatgtataacattttt
tatatgtcctgttaaacctaccttttagaatttaaaaatcgaaaaattga
aatgaaaaattaaatgaagaagaaaacgagtttttcaaagaaaagtattt
cacttttcaaagccctaatctcggtaaaaatcaaacattttggaattttt
tttggttcaggtgatgtatctattcattatctaaaaatataatctcggaa
aatttttgtgaaagtatctttccttttaaatacatgccacacttattcct
taaatTACTCATggtgtaattacttaaattcattttttcaaaagcagttt
gttcttaaacatgtcaaagaagcgaaaacataaggttttatcttcaaatt
ctgaaattgatttttcactatgaccagagcccttaagtcaTAAAATTCGT
TCATGAAATCgaaaatagatttattttaatgaatttctttgataacaaca
agagcaacaaaaaaactcaaactttgaaagcaaaatttgaaaaaaaattc
taccgtgcTATAATAGccgtggtatatcaggaattatttaATGACTGTTT
TTgtctacaggtatataataatatcGATTATTTCCCATCGTTTAAAAGTC
ATCANTCAGGAATTATTTAATGACTGTTTTTgtctacaggtatataataa
tatcGATTATTTCCCATCGTTTAAAAATCATCGAACCATTCTAGTGTTTG
AGCGTCAATGAATAAGCTATTGCCTTTACTTCATTATTTTAGAACGGACC
AAATTAGCTGCATCAAGTGGTAGCTATCATAGTGCTGTTTTTCATCCAAT
CAATTCACAATACATTGCAACCGCTAATTCATTACATGGTGTTTCACTTT
GGGATATTCGCAAACCTCTCAAGTAAgtttataattaatttttatttagt
TATTTTACCAAGCTAGGTTGAAGCTCATATTTGCTGTACATCGGAGATGC
TGATGTTGATGTTGGcctgttttcagaaaaagggcTACCTTCGATTTTTA
ATACAGCCTTAAAGCGACCAAGCATCTTATCGccagacttcttgaaagaa
aaatgatGAGGTGATTTTAGTAGCTGTCATTAGACTCAAGCCTGTACCTG
TACGCCTTTGTACGATGTTTAGCGGATAGTCAACTAACTTAGTTAACCTT
CACTCTAAAATATCAGACTAACATGTAAACACACTTAAAGTTCCGTTAAT
GAAATAATCATCAAACTCAAAGTTAGATTACAAAAATGCTAGCGCGGCGA
GCTCCAAGCAATCTTGCTCTTCGAAGTAAAATGAATCGCTTAATTGGCGG
ATAGACAAACACGTATACAACAACATTTACTGTAATCCCAATCATATGAA
ATAAGTTCGTCACCACAAGTTTCGTCCCGGAGTTCGCTGGTTTGCCTTGT
AAGTTGGATAAGAAAATAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047882-exon-scaffold_139-1491911889:462437..462606 | TCONS_00047882-exon-scaffold_139-1491911889:462437..462606 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1510915933:462437..462606 | TCONS_00047882-exon-scaffold_139-1510915933:462437..462606 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1575043694:462437..462606 | TCONS_00047882-exon-scaffold_139-1575043694:462437..462606 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1491911889:462888..463034 | TCONS_00047882-exon-scaffold_139-1491911889:462888..463034 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1510915933:462888..463034 | TCONS_00047882-exon-scaffold_139-1510915933:462888..463034 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1575043694:462888..463034 | TCONS_00047882-exon-scaffold_139-1575043694:462888..463034 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1491911889:465251..465287 | TCONS_00047882-exon-scaffold_139-1491911889:465251..465287 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1510915933:465251..465287 | TCONS_00047882-exon-scaffold_139-1510915933:465251..465287 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1575043694:465251..465287 | TCONS_00047882-exon-scaffold_139-1575043694:465251..465287 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1491911889:466381..466514 | TCONS_00047882-exon-scaffold_139-1491911889:466381..466514 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1510915933:466381..466514 | TCONS_00047882-exon-scaffold_139-1510915933:466381..466514 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1575043694:466381..466514 | TCONS_00047882-exon-scaffold_139-1575043694:466381..466514 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1491911889:469829..470508 | TCONS_00047882-exon-scaffold_139-1491911889:469829..470508 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1510915933:469829..470508 | TCONS_00047882-exon-scaffold_139-1510915933:469829..470508 | Clytia hemisphaerica | exon |
| TCONS_00047882-exon-scaffold_139-1575043694:469829..470508 | TCONS_00047882-exon-scaffold_139-1575043694:469829..470508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:462437..470508 + |
Blast
BLAST of TCONS_00047882 vs. Swiss-Prot (Human)
Match: DCAF5 (DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 2.823e-42 Identity = 81/205 (39.51%), Postives = 123/205 (60.00%), Query Frame = 2
Query: 8 YLIQSKLPNKERLHKKYSKKRFDSSHNLYRRNIVSHYACVNSIAFSKD-GELFVSGGDDKRVLLWNTSDLCQKEKPKPTIMKKEHYSNIFSTVFDCTAENVFSAGNDQKIIQHNIERREAVGYFFFDDSIYAVDSPPDNPKLLVASGEDGTVQVVDVR-SP-LERTKLAASSGSYHSAVFHPINSQYIATANSLHGVSLWDIRKP 613
+L Q L L + + ++R NLY+++++ H+ CVN+I FS + G+ VSGGDD+RVLLW+ + KP +K EH+SNIF F+ VFS GND+++I H++E E + F +D++Y + P N + +S +DG V + D+R SP E LA ++HS +F+P+ + +ATANS GV LWDIRKP
Sbjct: 17 FLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHS-RVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKP 220
The following BLAST results are available for this feature:
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