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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047884 ID=TCONS_00047884|Name=TCONS_00047884|organism=Clytia hemisphaerica|type=transcript|length=2603bpRun BLAST on NCBI transcript from alignment at scaffold_139:462437..480773+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047884 ID=TCONS_00047884|Name=TCONS_00047884|organism=Clytia hemisphaerica|type=transcript|length=18337bp|location=Sequence derived from alignment at scaffold_139:462437..480773+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047884 vs. Swiss-Prot (Human)
Match: DCAF5 (DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 3.333e-86 Identity = 128/298 (42.95%), Postives = 183/298 (61.41%), Query Frame = 3
Query: 366 FFFDDSIYAVDSPPDNPKLLVASGEDGTVQVVDVR-SPL-ERTKLAASSGSYHSAVFHPINSQYIATANSLHGVSLWDIRKP----LKILKKVSTGSGMSVRFNILGTRLLALYRKGGPVVYKLDGSNCEKEISHRMNHEKYQNYCTMKSACFAGDKDEYVVSGSDDFNIYVWKIPDLLDERCK-----LNSPHFILEGHRSIVNQVRYNSHLNLLASAGVEKCIKLWSCFPLRDGEGDLTNDTHYTQRRKYTHEQYMEMT-STTPRMSHNYDDESVEEDPRMIALFDSLIERTHNDW 1223
F +D++Y + P N + +S +DG V + D+R SP E LA ++HS +F+P+ + +ATANS GV LWDIRKP L+ +S S MSVRFN GT+LLAL R+ PV+Y + + + +++ Y N CTMKS CFAGD+D+Y++SGSDDFN+Y+W+IP D +N +L+GHRSIVNQVR+N H ++ S+GVEK IK+WS + GDL R YTHE+Y+ + ++ +SH+Y ++SV+EDPRM+A FDSL+ R W
Sbjct: 139 FAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIH----SRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIP--ADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGW 430 HSP 2 Score: 100.908 bits (250), Expect = 3.333e-86 Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 2
Query: 8 YLIQSKLPNKERLHKKYSKKRFDSSHNLYRRNIVSHYACVNSIAFSKD-GELFVSGGDDKRVLLWNTSDLCQKEKPKPTIMKKEHYSNIFSTVFDCTAENVFSAGNDQKIIQHNIESS 358
+L Q L L + + ++R NLY+++++ H+ CVN+I FS + G+ VSGGDD+RVLLW+ + KP +K EH+SNIF F+ VFS GND+++I H++ESS
Sbjct: 17 FLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHS-RVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESS 133 The following BLAST results are available for this feature:
BLAST of TCONS_00047884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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