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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047890 ID=TCONS_00047890|Name=TCONS_00047890|organism=Clytia hemisphaerica|type=transcript|length=608bp
CAGAttatgaatttcacttttttagTGCCAGCAAGTTCATTCATATTGAG
TAGAGTTAAAAAACCCATagattaaagaaaacattacAACAGTGCTGATG
ATGGCTTCAGAAATAAAAGTTTGTGTGATTGGACTAGGAGAGCTGGGGAC
GAGAATAGCAGGTGAATTGAGTTTGAATTATGGTTTGCGTGTACACGTGT
TCGATAATGATAAGTTAAAGATGAAAGATGTGAACTATCAGATCACACAG
CAAAAAGAAGAACTTATTCGTAATGGATTAATCTCACCCGTTGACTCATA
CGGTGACGTAGAGACATTCGAAACACTACAGGAAGCATTGATTGATGTTG
ATTTTGTATTTGAAGCGATCGTTGATCGATTGGATGTGAAACAATGGCTT
TATGAAAGTAAGTGGAGAGTATTATCGATTCATTTTCACTACCTGTATAG
TAACCCTTATCAGGAATGCAACCAAATGTGATTTGTTGGGAAGTAGATCG
GACTTTTAGACTTGAGAGGGTGTTCAATCACACGCCTTTGAGTCCCGAAG
ATGCTAAGCTTGGCACCCtactactttaatcggattaattttcgtgaTTT
CACAaact Run BLAST on NCBI transcript from alignment at scaffold_139:503296..505995+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047890 ID=TCONS_00047890|Name=TCONS_00047890|organism=Clytia hemisphaerica|type=transcript|length=2700bp|location=Sequence derived from alignment at scaffold_139:503296..505995+ (Clytia hemisphaerica)
CAGAttatgaatttcacttttttagTGCCAGCAAGTTCATTCATATTGAG
TAGAGTTAAAAAACCCATagattaaagaaaacattacAACAGTGCTGATG
ATGGCTTCAGAAATAAAAGTTTGTGTGATTGGACTAGGAGAGCTGGGGAC
GAGAATAGCAGGTGAACTTTTGTTTGTATACTTACTTTTGCTCAAATGAT
TATCAATGCTTTTCTCCCGCAAGTTTATTTAAATTTGGGTAAATTTCCTA
ACAAATAACCCGTCCATCTGCGCATATCACGCGCTGCTCTAAAGGGATTT
GGTGATCTTGATCATCTGCTCagccaaaataaaaaacatttgaaaacgaa
agcagaAGCGAAAACGACTGGGTTGTATATATAGATAGTTCATGTTTATA
TTTATAAACCTGCTATAATTTCACAATTTCCACTAATCGACTTTTCAGGT
GAATTGAGTTTGAATTATGGTTTGCGTGTACACGTGTTCGATAATGATAA
GTTAAAGATGAAAGATGTGAACTATCAGATCACACAGCAAAAAGAAGAAC
TTATTCGTAATGGATTAATCTCACCCGTTGACTCATACGTAAGTTTGTTT
CTACGTCTTCTTCATCGTCATCATTCTCGaattattttggtttaaatatt
gaaaattatcgatattttttgctgagtcaacAGTTTTTCAGTATATTTAT
CCACCTTGAAAATGAATTGATCTTCATCTCGAGATTtacaatcagcgccg
aaatatattggcaatggGTAAttcaacgtttttcagaatttaatgGTCGG
Gttagaattgcagtttcagtacttccactttgcttcattagatttttcga
tttgggagggattaagtggcttccaggctatattctcagccttaatggaa
catttttgagtttttatatgctgagatcctaaggtccctaagtcttaagt
ctaatgtgaaaactcagagttaaaactgtGCTTTCCGaactgtacttcaa
agcacttaaaaatcactcgcggtttcaaagttttgagggaatttcccttt
tttgccaaatatttcaGTGCCAATTGCAGACACCGCAACttgacaaacca
taccatttttggattttACAAACTCAGGAGCTATCCAGTTGtgagaatga
ttttttctgaaaatgctctcAGGAGCTATAAACTCATACAAATCAAATCT
ATAATTTAGCACCATAGTGCCCCCTTCTTAAATACCTATTTTTTGGTACC
CCCTCCCCTCCAATTTTGGAAAGTGTCTCTGACGTGGTATTTCTCCGTCT
TATCCTTTAGGGTCATTTAATCTCTCAAAGTTTAGTTCAAATTGCCCTTT
TACCTGAACTTTTATACTAATACAGtgaacaaaattgaaatttattgtGA
TCTTATGATCTTAAAAGAGCTTCAACAccttaggcgtacaaacttttgtg
agcagaaactttcgcgattttggcgaattttggcccttttcgcgaaagta
aatatctttaaaaattctaagaaggccattcgcgaaagtttatactcgcg
aaaaattcttgacaaaatagaaaatctttcaaacttcgaataaaatataa
cttttatggcaatttttagcctgctaaaagactaaaaagtcaaaggacaa
atgtttaaagccaatccaagaagtatttgtccctctaaaccattttttca
tgtgaaaattctcaattttacgtcttgattcgcgaaagtttatgctcgcg
aaaaatatttttccgttaaattcgcgaaagtaaatgtcgtgaatttcgca
atttttagtcctcgcgaaagtttctgctcgcgaaagtttgtacgcctaaa
gtatatcGACCCCCTTCCTAAGCAATCCCCCTTTATGCTCATATCCCAGC
CCTCCGAATTTCTCTATCTTCGATTTTTTAGAGAATACCGTCGCCCCTCA
AGAAAGGGAGGGTGTAAGAACTACGAGTACATTAATCTCGGGTGACCTTC
TCTTCTAGTAAAGAAAAGTTTCTCGCAGTGTACATCCAAGATTCAAAAAA
GCTGTTTAGAGTAATATTAAATCAAAAGAACCGAATCATGTTTTGAAGCC
AAACccttagacgatgttatcgtccgatacagtgatagtaaaggccgGAG
AAATAAGGTGTTATggtggtatacggaaaaaaaaatcggcaggagagttt
cgaagaaagactggcaaactctaccggctgTAAAACTattcttttcggca
aaaagccTTTTTGCGAATtatcttcggctttgggcttatttcttagatag
tgatttgtttTAGACTATAGCATATAGTCTACCAAACCCTAAGAGATAGA
AGGTTCTTTAATTAACTGGATCAATGTGACATTATTTTCGTAGGGTGACG
TAGAGACATTCGAAACACTACAGGAAGCATTGATTGATGTTGATTTTGTA
TTTGAAGCGATCGTTGATCGATTGGATGTGAAACAATGGCTTTATGAAAG
TAAGTGGAGAGTATTATCGATTCATTTTCACTACCTGTATAGTAACCCTT
ATCAGGAATGCAACCAAATGTGATTTGTTGGGAAGTAGATCGGACTTTTA
GACTTGAGAGGGTGTTCAATCACACGCCTTTGAGTCCCGAAGATGCTAAG
CTTGGCACCCtactactttaatcggattaattttcgtgaTTTCACAaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047890-exon-scaffold_139-1491911889:503296..503456 | TCONS_00047890-exon-scaffold_139-1491911889:503296..503456 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1510915933:503296..503456 | TCONS_00047890-exon-scaffold_139-1510915933:503296..503456 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1575043694:503296..503456 | TCONS_00047890-exon-scaffold_139-1575043694:503296..503456 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1491911889:503744..503883 | TCONS_00047890-exon-scaffold_139-1491911889:503744..503883 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1510915933:503744..503883 | TCONS_00047890-exon-scaffold_139-1510915933:503744..503883 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1575043694:503744..503883 | TCONS_00047890-exon-scaffold_139-1575043694:503744..503883 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1491911889:505689..505995 | TCONS_00047890-exon-scaffold_139-1491911889:505689..505995 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1510915933:505689..505995 | TCONS_00047890-exon-scaffold_139-1510915933:505689..505995 | Clytia hemisphaerica | exon |
| TCONS_00047890-exon-scaffold_139-1575043694:505689..505995 | TCONS_00047890-exon-scaffold_139-1575043694:505689..505995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:503296..505995 + |
Blast
The following BLAST results are available for this feature:
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