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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047891 ID=TCONS_00047891|Name=TCONS_00047891|organism=Clytia hemisphaerica|type=transcript|length=2966bp
cacccctttctcacaggcCCACTTGGACCCCtgcccactggaaaatttgg
ctaaaatattgtccccggtggaaaatcatcCTCGATTTTTGGCTCatctc
aaaataaacaaataaaccaatcctcactgcaaaatattatgttatttttc
ccatccccactgaattttctgacttgaaaacaaaagaattaaaatcccca
gccataaaaattattggaatatcaatccccattgagtttcagtccgaTAT
TTTTTtcccactggctgataaaattctaccgggtctgtgagaaggggatg
tgtTAAAGACTCTCTCGTAGACCTTCTTAGTGTATTACTTTTTCTGCAGA
AACAAAAGTATGAGCCTTACcaaaagattgaatttcaatgtCTTTTTTTT
ACAGAGATCACCCACAATTGCAAGAGTGACACAGTGGTTTGCAGCAACAC
ATTACAGTTGAATCTGGAAGACATTGCCGAAAGCTGCCTGTTTAAAAACG
TAAGTTAACGATTTAAGAATTGACCTCGTATCGTAGACACCTCGATTCCG
TTTGATGTAGAAAATTGTCTCCGACTGAATGTTAATCTTTACTGATGAAA
AAGGGCCAACGGGGCACTGAGGTTTTTCGGAATAGAAAATAGAGAATGAC
TAATGGGCTGTTCCAAAAAACtcccatacaggggggtggacgaacctttt
caaatcaaaacaaatttcttggaaagTGTAGATACctcctggaaaatggc
aaagaCCCTGGAAAagattattttcatctcttaaagtgagggtggacgaa
ctaataTCAGTCGTTTACCCCTTGGAAGTTTAAGGATAGCTTTTTACATC
CTGGAAATATGAAAagtaccccctggaaaagttcgtctacccccctgtat
ggttataaaataatggaatggcccaatatgaCCAGAAATGTCACTTAGCT
TTTAGGATCGACAAAAGACAATTGATTTCATACGAAGGAAGAACTATTTG
GTaaataaatttcatatttttatttttcttatttcttcagAGGGTGATTG
GTTGTCGATTTTTAGTTCCAGTCTACAGAATCCCATTGGTTGAAATGATG
TACACTTCCATGACTTCCATTGACATCGTACGAAAAGGTATGTATgttac
tgacctttatatatccctggactaTATCCGTCATCATATCCGCCGCCGTC
AGCTAtacccgccatctttgatcgaaatttcttttgaattggTATACCCG
TAAaaaagccattgcagtgttaaaaattaacgtctaacggcgctacatca
tcataAGTTATGGGGGTAAAATAGATCCAGCGcactcgatgcatttacac
ctctattgaatagtgccgccattagggtaccatttttaaaaaactccgat
caaatattttgcttggcccGGATTAAGAAGCTCTGTCCAGGGTAAAAAAG
GTATGTATGACATACTACTAAATAATGCTTGCTTGTTACGTTATTTTAGC
CTCAAGTTGAGGATTTTGATATTGGTATCTCCCAAAAAACCACCATCATT
AATAGCTTTTGCCAGAGCTTTTCTTTCCAATTGAATTCATAGTAAAAAGA
ggaaataaattgaaatttcgtcaatgtgatttttttcagtgaagACATTT
TTCCAACGAATTGAAAAACAAGTAGTAGTTCGACAACCTGATGAAAAACC
AAGAATACTCACACTCAAAGAATCAAGAGAATTCTGGGAAGGTAAGCGAG
CTAAGCTGACAAGTTGAAATAGTTTTCTTTTTCCACATTGTTACTGTGTG
AAACCAAAAGTGTAATGACAATGGTGTGTTTCGGAGGGTTCAAAATATCG
GAATCGGAGTACCGTATCTTTTTAAGGGCTATGACCATAGTCAAAAGGTC
GGTTATGAgctttgaagataaaacttgtgtttttgagttccttacacttt
taacaaaaaactgtCTTTAATTTATAAGTTGTTTATGAATTTATTCTATC
AGGAGTAATTAGCAacttaaaattacaaaaattacgTTAATGAAATGCTA
TTTTACCCTATTTTACAAAAGGTGCtcagttttaatgggtaattaacctt
tatgtttcaaattttttttgaattatctgcatagattttgagacaaagaa
gcttttacaaaaattttccgaaaatctgttgttagtttggttaaagatGC
ACCATCTAgtgcaaaacattttttcaaaatgtttttgtttcgtcGAAAAT
AAGGTCCTGAAAGTTGATATACTTGTCTTcgcaaatgtcttcattttcgt
cttcatcaaactttttcaatgcaatttttgaattttcagaatcaggaata
gttggcctaacagaaaatatataacatgccatagttttgttgtttacatc
agtcagaaaaacacaatttataCACGACAATTacaaaaaattcactatgg
tcagagcccttaattaaAATACCGATCTACCTTCAAGCCAACATTCTatg
aaatcatcaaaaaattgttttgtccCCTTTAATAATCTACAATTTTGTTA
GAGTTGAAAGATACTACTAGATACCTTCGAGTCCTTTTAGAAAAACGAAT
TTATCCCAGTTCACATCGACCCTGTAAAAAAGGATTTCGTCACTTTTAGA
GGCCAAGGAAAAAGTTCGGAGAGACCAATTGATTCAAAACACAATTGCAT
CTCATGGAAGTTTCCTTACACCAGCTACCATACTGAACACAGATAATTCA
CCTTGCAAGTATGACCACGAATCTGTGGACGAAAATTCACTCGAACAACA
CAGTGATACTTCGCTTAGTAAGTGTGACCAAGGAGCGATACTAAAACAAC
CAGGAACAGACGTAGTAAATGAAGCCACGGTTTCAAACGATGATCATCGT
GAAACTGAAACACATGTTGTCATAGAAAcacaacaaaaagaaaaactcgT
CCAAGATAAACCCAAA Run BLAST on NCBI transcript from alignment at scaffold_139:508488..511453+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047891 ID=TCONS_00047891|Name=TCONS_00047891|organism=Clytia hemisphaerica|type=transcript|length=2966bp|location=Sequence derived from alignment at scaffold_139:508488..511453+ (Clytia hemisphaerica)
cacccctttctcacaggcCCACTTGGACCCCtgcccactggaaaatttgg
ctaaaatattgtccccggtggaaaatcatcCTCGATTTTTGGCTCatctc
aaaataaacaaataaaccaatcctcactgcaaaatattatgttatttttc
ccatccccactgaattttctgacttgaaaacaaaagaattaaaatcccca
gccataaaaattattggaatatcaatccccattgagtttcagtccgaTAT
TTTTTtcccactggctgataaaattctaccgggtctgtgagaaggggatg
tgtTAAAGACTCTCTCGTAGACCTTCTTAGTGTATTACTTTTTCTGCAGA
AACAAAAGTATGAGCCTTACcaaaagattgaatttcaatgtCTTTTTTTT
ACAGAGATCACCCACAATTGCAAGAGTGACACAGTGGTTTGCAGCAACAC
ATTACAGTTGAATCTGGAAGACATTGCCGAAAGCTGCCTGTTTAAAAACG
TAAGTTAACGATTTAAGAATTGACCTCGTATCGTAGACACCTCGATTCCG
TTTGATGTAGAAAATTGTCTCCGACTGAATGTTAATCTTTACTGATGAAA
AAGGGCCAACGGGGCACTGAGGTTTTTCGGAATAGAAAATAGAGAATGAC
TAATGGGCTGTTCCAAAAAACtcccatacaggggggtggacgaacctttt
caaatcaaaacaaatttcttggaaagTGTAGATACctcctggaaaatggc
aaagaCCCTGGAAAagattattttcatctcttaaagtgagggtggacgaa
ctaataTCAGTCGTTTACCCCTTGGAAGTTTAAGGATAGCTTTTTACATC
CTGGAAATATGAAAagtaccccctggaaaagttcgtctacccccctgtat
ggttataaaataatggaatggcccaatatgaCCAGAAATGTCACTTAGCT
TTTAGGATCGACAAAAGACAATTGATTTCATACGAAGGAAGAACTATTTG
GTaaataaatttcatatttttatttttcttatttcttcagAGGGTGATTG
GTTGTCGATTTTTAGTTCCAGTCTACAGAATCCCATTGGTTGAAATGATG
TACACTTCCATGACTTCCATTGACATCGTACGAAAAGGTATGTATgttac
tgacctttatatatccctggactaTATCCGTCATCATATCCGCCGCCGTC
AGCTAtacccgccatctttgatcgaaatttcttttgaattggTATACCCG
TAAaaaagccattgcagtgttaaaaattaacgtctaacggcgctacatca
tcataAGTTATGGGGGTAAAATAGATCCAGCGcactcgatgcatttacac
ctctattgaatagtgccgccattagggtaccatttttaaaaaactccgat
caaatattttgcttggcccGGATTAAGAAGCTCTGTCCAGGGTAAAAAAG
GTATGTATGACATACTACTAAATAATGCTTGCTTGTTACGTTATTTTAGC
CTCAAGTTGAGGATTTTGATATTGGTATCTCCCAAAAAACCACCATCATT
AATAGCTTTTGCCAGAGCTTTTCTTTCCAATTGAATTCATAGTAAAAAGA
ggaaataaattgaaatttcgtcaatgtgatttttttcagtgaagACATTT
TTCCAACGAATTGAAAAACAAGTAGTAGTTCGACAACCTGATGAAAAACC
AAGAATACTCACACTCAAAGAATCAAGAGAATTCTGGGAAGGTAAGCGAG
CTAAGCTGACAAGTTGAAATAGTTTTCTTTTTCCACATTGTTACTGTGTG
AAACCAAAAGTGTAATGACAATGGTGTGTTTCGGAGGGTTCAAAATATCG
GAATCGGAGTACCGTATCTTTTTAAGGGCTATGACCATAGTCAAAAGGTC
GGTTATGAgctttgaagataaaacttgtgtttttgagttccttacacttt
taacaaaaaactgtCTTTAATTTATAAGTTGTTTATGAATTTATTCTATC
AGGAGTAATTAGCAacttaaaattacaaaaattacgTTAATGAAATGCTA
TTTTACCCTATTTTACAAAAGGTGCtcagttttaatgggtaattaacctt
tatgtttcaaattttttttgaattatctgcatagattttgagacaaagaa
gcttttacaaaaattttccgaaaatctgttgttagtttggttaaagatGC
ACCATCTAgtgcaaaacattttttcaaaatgtttttgtttcgtcGAAAAT
AAGGTCCTGAAAGTTGATATACTTGTCTTcgcaaatgtcttcattttcgt
cttcatcaaactttttcaatgcaatttttgaattttcagaatcaggaata
gttggcctaacagaaaatatataacatgccatagttttgttgtttacatc
agtcagaaaaacacaatttataCACGACAATTacaaaaaattcactatgg
tcagagcccttaattaaAATACCGATCTACCTTCAAGCCAACATTCTatg
aaatcatcaaaaaattgttttgtccCCTTTAATAATCTACAATTTTGTTA
GAGTTGAAAGATACTACTAGATACCTTCGAGTCCTTTTAGAAAAACGAAT
TTATCCCAGTTCACATCGACCCTGTAAAAAAGGATTTCGTCACTTTTAGA
GGCCAAGGAAAAAGTTCGGAGAGACCAATTGATTCAAAACACAATTGCAT
CTCATGGAAGTTTCCTTACACCAGCTACCATACTGAACACAGATAATTCA
CCTTGCAAGTATGACCACGAATCTGTGGACGAAAATTCACTCGAACAACA
CAGTGATACTTCGCTTAGTAAGTGTGACCAAGGAGCGATACTAAAACAAC
CAGGAACAGACGTAGTAAATGAAGCCACGGTTTCAAACGATGATCATCGT
GAAACTGAAACACATGTTGTCATAGAAAcacaacaaaaagaaaaactcgT
CCAAGATAAACCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047891-exon-scaffold_139-1491911889:508488..511453 | TCONS_00047891-exon-scaffold_139-1491911889:508488..511453 | Clytia hemisphaerica | exon |
| TCONS_00047891-exon-scaffold_139-1510915933:508488..511453 | TCONS_00047891-exon-scaffold_139-1510915933:508488..511453 | Clytia hemisphaerica | exon |
| TCONS_00047891-exon-scaffold_139-1575043694:508488..511453 | TCONS_00047891-exon-scaffold_139-1575043694:508488..511453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:508488..511453 + |
Blast
The following BLAST results are available for this feature:
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