TCONS_00047892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047892
Unique NameTCONS_00047892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047892 ID=TCONS_00047892|Name=TCONS_00047892|organism=Clytia hemisphaerica|type=transcript|length=1351bp
aaagacaTTGAGagtggaaattatattttttcgaagTTATACTGTGTTGT
GTAGTTCTTGGAGACAAAAAAAGCATgacttcaaaaaatgtttagcTCCC
CTTTAAATGTTTCTTTCTTCCATTTAgcaaaaataaaccaaaatgAATTC
AGAtagtttaaatcaaaatattgattaTGTATCAAGCAGTGGACATATTT
TGAGTGTAGAGCAAAAAGCTGCACTCCAATCATCCCTTGTCATTCTGAAA
AaccaacaaaaatttaaaacagttgaATTTTGGGGTAAAGTGACTGGAAC
TAAAAATGAATATTTCATTGTACAAGGCATTGGTACGGATCAAATCAAAG
ATAGAAAAACGCTATACAGtttGGATTGTATAAAATGGGGGCTGATGCCA
ACTCCGAATGAAGAGACAAGGAGGAAATGTACTTTGATCAAAGGACGGTT
CACAGGAGATCCTTCACATGAATATGAACATTCTGAGAAAAATAATGATG
AAGAATTGAATGAAGAGGAAGGAAACATGATAATAGTGAAAGAGGAGGAT
CGATTAGCAATCGTTGTGGAAAATATCTGTCGAGATGTTGCCATTGTCCC
TCGTGGAGCTTTTCTTAGAACTCCACTGGGTGAAGTCATCAAAAATAAAG
CTTTCGAAGGTTTATCATCAACAGAAGCCCTACGCTTGACGTCATATTTC
CATTTTCGTGATCCTATACTTCTTCACCAAAAGACTCTACTAGAACAGGC
TGATTTGGACAAAGCGATTGACTTTTTGGACCCTATCGTGACTGACATTC
CTGTTGACGGTTCATGGAGCATCCAAGCAGAACGTGGTCACAGTTTGATT
GTTATTCGAAGTCTTCATTGGTTAGGTTTTACATTCTACCATGTGCCGGA
GACCAACTCCTATGGATATGTTTATTTTGGAACTGGTGAAAAGAATCTTG
ATCTTCCTTTCATGTTGTAATGTAGTGACACCATATTTACCAATATTTAT
TTCGGTGTAACCTTTCAAAGTTAAGAGATTGGCTTTTCTTACATGTCAAT
AAGGGGCTGATGTGGCTTTCAATACAGCATTTCATGATGTGAAGGTGTTA
CTTAGGATAACTTTCTTTCTGTTTCTCTTGATAAAGCTATCGAAATGATT
TCAAATATAGGGATTAACTTCTTTGATCGTGAACATCTCTgttaaacttg
tttttttttatttacgaAATATTTGTTAATTTTCTTGATTGTTGTAAATA
GTTAAACCATCTAAATAATATAATATCGAAAAGTGCTTTTTAAACTACTG
AgttagttttttaaatttgcccTCTTCAGTCCTCTATATGTATTGTAACG
G
Run BLAST on NCBI

protein sequence of TCONS_00047892-protein

>TCONS_00047892-protein ID=TCONS_00047892-protein|Name=TCONS_00047892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MNSDSLNQNIDYVSSSGHILSVEQKAALQSSLVILKNQQKFKTVEFWGKV
TGTKNEYFIVQGIGTDQIKDRKTLYSLDCIKWGLMPTPNEETRRKCTLIK
GRFTGDPSHEYEHSEKNNDEELNEEEGNMIIVKEEDRLAIVVENICRDVA
IVPRGAFLRTPLGEVIKNKAFEGLSSTEALRLTSYFHFRDPILLHQKTLL
EQADLDKAIDFLDPIVTDIPVDGSWSIQAERGHSLIVIRSLHWLGFTFYH
VPETNSYGYVYFGTGEKNLDLPFML
Run BLAST on NCBI

transcript from alignment at scaffold_139:531258..534300+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047892 ID=TCONS_00047892|Name=TCONS_00047892|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at scaffold_139:531258..534300+ (Clytia hemisphaerica)
aaagacaTTGAGagtggaaattatattttttcgaagTTATACTGTGTTGT
GTAGTTCTTGGAGACAAAAAAAGCATgacttcaaaaaatgtttagcTCCC
CTTTAAATGTTTCTTTCTTCCATTTAgcaaaaataaaccaaaatgAATTC
AGAtagtttaaatcaaaatattgattaTGTATCAAGCAGTGGACATATTT
TGAGTGTAGAGCAAAAAGCTGCACTCCAATCATCCCTTGTCATTCTGAAA
AaccaacaaaaatttaaaacagttgaATTTTGGGGTAAAGTGACTGGAAC
TAAAAATGAATATTTCATTGTACAAGGCATTGGTACGGATCAAATCAAAG
ATAGAAAAACGCTATACAGGTATCtcttctttatgaaatttgtcttAGTT
TGAAATTAGAAATAATTAGTAATATAAATTTCCCTCATTGTACTAAAAGA
GCTATTAAAGTTTTATTAGTTGCTTAAATTGTCaagttaaatatttttat
tattaaaggattttcaattgctttttttcttcaagtttGGATTGTATAAA
ATGGGGGCTGATGCCAACTCCGAATGAAGAGACAAGGAGGAAATGTACTT
TGATCAAAGGACGGTTCACAGGAGATCCTTCACATGAATATGAACATTCT
GAGAAAAATAATGATGAAGAATTGAATGAAGAGGAAGGAAACATGGTCAG
TTTCAATATTATTTGCTCTTAATAAAAAGGAACCatatcgtcgcatcaaa
ataaaaaagcttgaagtcatttttttaacaattttttcgGCTGAAATCCA
ACTTaaaaagggacataacagtacttgcgaaatttgtaaacaaactgtat
gcagcagatacaaaatcaaaacaaatgtcacatgtcaaaatgtcaaaata
aaaaatcaaaacaaatatggctaattttgattgttcaattgttttacaag
tttgttttggacacgtgattttaattgttctctttaatgacacgtggttt
gcgcaatgtttacattttactactgttatgtccctttaaggtagtctaat
tttaagtttttagaaaaataagaattttacttATCACTTTATTATTTTCA
GGGTAAAAAAAGCCTTACACCACATCAGTTTAGGGCAAAAAAGTCCTTTT
TAAGTCAAGTGGGGAAACAATTttggacttaaggcttttttaacacaaaa
atatttcaaatgttaaTGGTTTTCAGAGATTTTTTAagggaaaaataatt
taaagtcgattttctcaaaataacaaaaatggggttttttattttgatgc
aacgatatttttattcttcaTTATATACTGCTTCTTTTTAACCTGCTCAT
ATTCAAATCTTTATAACTTTAATGATTACCAAGTTTGAACTTTTTTTACC
AAATAAATCTCAATTATTTTTGGTTTAGCCACATGATTTGAATTTGGTTT
ATTGAATTTAACTTGCTGTTTCAGATAATAGTGAAAGAGGAGGATCGATT
AGCAATCGTTGTGGAAAATATCTGTCGAGATGTTGCCATTGTCCCTCGTG
GAGCTTTTCTTAGAACTCCACTGGGTGAAGTCATCAAAAATAAAGCTTTC
GAAGGTTTGAGTTATTATATAGAAGTTATGgttaaataactttttaaaaa
gttaatgTTAATTCAAAATACTGTtcaggcgagaccaatttggttagttg
ttttacgggctcGACCAAccatgaaatttcaaaaatcaaaataaaattaa
attaattatgttttttttttgcatttttgaatttttgtcaagatgtagta
gtttttgcatCATTTCTATGaatttaaagctaattttattccttttttag
CGTGAAACTTTCTAAAATATCGTTATTTTTGACAGGTTTATCATCAACAG
AAGCCCTACGCTTGACGTCATATTTCCATTTTCGTGATCCTATACTTCTT
CACCAAAAGACTCTACTAGAACAGGTATTACTCTAATCTGCTGATGAACA
TGAACTATTTCCCCTAACACATTGCCAATCAGTAATATTGTAATCAATTC
AGTAAAATACTATGCTCCtaaccaaggaaaatgaaacGTTTTCTTCAGGC
ACTAAGAACTATCTTTATCCTACtaagtttcaaaatattattgttAAATG
TTCAATGTTGACTTTTGGAAAAAgctatttttgacttttaatattttCGT
TTTCGATTTTACAGGCTGATTTGGACAAAGCGATTGACTTTTTGGACCCT
ATCGTGACTGACATTCCTGTTGACGGTAATTACATAGTTTGTTAACTGTA
ACAGCAGAAATTACCCAAATCTGAAATTTCGAGTCATTACAAATACAAAG
AATTTTAGAATTAGAAATAGTTCGAATTGTAGAAACATTTGAATAACAGA
AATTCGAAATAGAAAGCTGAGAGGTAACTGTATTTTCACTCATTAATGAA
TGCCATGTAAACAGGCCTAGATCCATATTTGTGATTTCACTTTATTTATA
GGTTCATGGAGCATCCAAGCAGAACGTGGTCACAGTTTGATTGTTATTCG
AAGTCTTCATTGGTTAGGTTTTACATTCTACCATGTGCCGGAGACCAACT
CCTATGGATATGTTTATTTTGGAACTGGTGAAAAGAATCTTGATCTTCCT
TTCATGTTGTAATGTAGTGACACCATATTTACCAATATTTATTTCGGTGT
AACCTTTCAAAGTTAAGAGATTGGCTTTTCTTACATGTCAATAAGGGGCT
GATGTGGCTTTCAATACAGCATTTCATGATGTGAAGGTGTTACTTAGGAT
AACTTTCTTTCTGTTTCTCTTGATAAAGCTATCGAAATGATTTCAAATAT
AGGGATTAACTTCTTTGATCGTGAACATCTCTgttaaacttgtttttttt
tatttacgaAATATTTGTTAATTTTCTTGATTGTTGTAAATAGTTAAACC
ATCTAAATAATATAATATCGAAAAGTGCTTTTTAAACTACTGAgttagtt
ttttaaatttgcccTCTTCAGTCCTCTATATGTATTGTAACGG

Coding sequence (CDS) from alignment at scaffold_139:531258..534300+

>TCONS_00047892 ID=TCONS_00047892|Name=TCONS_00047892|organism=Clytia hemisphaerica|type=CDS|length=4968bp|location=Sequence derived from alignment at scaffold_139:531258..534300+ (Clytia hemisphaerica)
atgAATTCAGAtagtttaaatcaaaatattgattaTGTATCAAGCAGTGG
ACATATTTTGAGTGTAGAGCAAAAAGCTGCACTCCAATCATCCCTTGTCA
TTCTGAAAAaccaacaaaaatttaaaacagttgaATTTTGGGGTAAAGTG
ACTGGAACTAAAAATGAATATTTCATTGTACAAGGCATTGGTACGGATCA
AATCAAAGATAGAAAAACGCTATACAGtttGGATTGTATAAAATGGGGGC
TGATGCCAACTCCGAATGAAGAGACAAGGAGGAAATGTACTTTGATCAAA
GGACGGTTCACAGGAGATCCTTCACATGAATATGAACATTCTGAGAAAAA
TAATGATGAAGAATTGAATGAAGAGGAAGGAAACATGATAATAGTGAAAG
AGGAGGATCGATTAGCAATCGTTGTGGAAAATATCTGTCGAGATGTTGCC
ATTGTCCCTCGTGGAGCTTTTCTTAGAACTCCACTGGGTGAAGTCATCAA
AAATAAAGCTTTCGAAGGTTTATCATCAACAGAAGCCCTACGCTTGACGT
CATATTTCCATTTTCGTGATCCTATACTTCTTCACCAAAAGACTCTACTA
GAACAGGCTGATTTGGACAAAGCGATTGACTTTTTGGACCCTATCGTGAC
TGACATTCCTGTTGACGGTTCATGGAGCATCCAAGCAGAACGTGGTCACA
GTTTGATTGTTATTCGAAGTCTTCATTGGTTAGGTTTTACATTCTACCAT
GTGCCGGAGACCAACTCCTATGGATATGTTTATTTTGGAACTGGTGAAAA
GAATCTTGATCTTCCTTTCATGTTGTAAatgAATTCAGAtagtttaaatc
aaaatattgattaTGTATCAAGCAGTGGACATATTTTGAGTGTAGAGCAA
AAAGCTGCACTCCAATCATCCCTTGTCATTCTGAAAAaccaacaaaaatt
taaaacagttgaATTTTGGGGTAAAGTGACTGGAACTAAAAATGAATATT
TCATTGTACAAGGCATTGGTACGGATCAAATCAAAGATAGAAAAACGCTA
TACAGtttGGATTGTATAAAATGGGGGCTGATGCCAACTCCGAATGAAGA
GACAAGGAGGAAATGTACTTTGATCAAAGGACGGTTCACAGGAGATCCTT
CACATGAATATGAACATTCTGAGAAAAATAATGATGAAGAATTGAATGAA
GAGGAAGGAAACATGATAATAGTGAAAGAGGAGGATCGATTAGCAATCGT
TGTGGAAAATATCTGTCGAGATGTTGCCATTGTCCCTCGTGGAGCTTTTC
TTAGAACTCCACTGGGTGAAGTCATCAAAAATAAAGCTTTCGAAGGTTTA
TCATCAACAGAAGCCCTACGCTTGACGTCATATTTCCATTTTCGTGATCC
TATACTTCTTCACCAAAAGACTCTACTAGAACAGGCTGATTTGGACAAAG
CGATTGACTTTTTGGACCCTATCGTGACTGACATTCCTGTTGACGGTTCA
TGGAGCATCCAAGCAGAACGTGGTCACAGTTTGATTGTTATTCGAAGTCT
TCATTGGTTAGGTTTTACATTCTACCATGTGCCGGAGACCAACTCCTATG
GATATGTTTATTTTGGAACTGGTGAAAAGAATCTTGATCTTCCTTTCATG
TTGTAAatgAATTCAGAtagtttaaatcaaaatattgattaTGTATCAAG
CAGTGGACATATTTTGAGTGTAGAGCAAAAAGCTGCACTCCAATCATCCC
TTGTCATTCTGAAAAaccaacaaaaatttaaaacagttgaATTTTGGGGT
AAAGTGACTGGAACTAAAAATGAATATTTCATTGTACAAGGCATTGGTAC
GGATCAAATCAAAGATAGAAAAACGCTATACAGtttGGATTGTATAAAAT
GGGGGCTGATGCCAACTCCGAATGAAGAGACAAGGAGGAAATGTACTTTG
ATCAAAGGACGGTTCACAGGAGATCCTTCACATGAATATGAACATTCTGA
GAAAAATAATGATGAAGAATTGAATGAAGAGGAAGGAAACATGATAATAG
TGAAAGAGGAGGATCGATTAGCAATCGTTGTGGAAAATATCTGTCGAGAT
GTTGCCATTGTCCCTCGTGGAGCTTTTCTTAGAACTCCACTGGGTGAAGT
CATCAAAAATAAAGCTTTCGAAGGTTTATCATCAACAGAAGCCCTACGCT
TGACGTCATATTTCCATTTTCGTGATCCTATACTTCTTCACCAAAAGACT
CTACTAGAACAGGCTGATTTGGACAAAGCGATTGACTTTTTGGACCCTAT
CGTGACTGACATTCCTGTTGACGGTTCATGGAGCATCCAAGCAGAACGTG
GTCACAGTTTGATTGTTATTCGAAGTCTTCATTGGTTAGGTTTTACATTC
TACCATGTGCCGGAGACCAACTCCTATGGATATGTTTATTTTGGAACTGG
TGAAAAGAATCTTGATCTTCCTTTCATGTTGTAAatgAATTCAGAtagtt
taaatcaaaatattgattaTGTATCAAGCAGTGGACATATTTTGAGTGTA
GAGCAAAAAGCTGCACTCCAATCATCCCTTGTCATTCTGAAAAaccaaca
aaaatttaaaacagttgaATTTTGGGGTAAAGTGACTGGAACTAAAAATG
AATATTTCATTGTACAAGGCATTGGTACGGATCAAATCAAAGATAGAAAA
ACGCTATACAGtttGGATTGTATAAAATGGGGGCTGATGCCAACTCCGAA
TGAAGAGACAAGGAGGAAATGTACTTTGATCAAAGGACGGTTCACAGGAG
ATCCTTCACATGAATATGAACATTCTGAGAAAAATAATGATGAAGAATTG
AATGAAGAGGAAGGAAACATGATAATAGTGAAAGAGGAGGATCGATTAGC
AATCGTTGTGGAAAATATCTGTCGAGATGTTGCCATTGTCCCTCGTGGAG
CTTTTCTTAGAACTCCACTGGGTGAAGTCATCAAAAATAAAGCTTTCGAA
GGTTTATCATCAACAGAAGCCCTACGCTTGACGTCATATTTCCATTTTCG
TGATCCTATACTTCTTCACCAAAAGACTCTACTAGAACAGGCTGATTTGG
ACAAAGCGATTGACTTTTTGGACCCTATCGTGACTGACATTCCTGTTGAC
GGTTCATGGAGCATCCAAGCAGAACGTGGTCACAGTTTGATTGTTATTCG
AAGTCTTCATTGGTTAGGTTTTACATTCTACCATGTGCCGGAGACCAACT
CCTATGGATATGTTTATTTTGGAACTGGTGAAAAGAATCTTGATCTTCCT
TTCATGTTGTAAatgAATTCAGAtagtttaaatcaaaatattgattaTGT
ATCAAGCAGTGGACATATTTTGAGTGTAGAGCAAAAAGCTGCACTCCAAT
CATCCCTTGTCATTCTGAAAAaccaacaaaaatttaaaacagttgaATTT
TGGGGTAAAGTGACTGGAACTAAAAATGAATATTTCATTGTACAAGGCAT
TGGTACGGATCAAATCAAAGATAGAAAAACGCTATACAGtttGGATTGTA
TAAAATGGGGGCTGATGCCAACTCCGAATGAAGAGACAAGGAGGAAATGT
ACTTTGATCAAAGGACGGTTCACAGGAGATCCTTCACATGAATATGAACA
TTCTGAGAAAAATAATGATGAAGAATTGAATGAAGAGGAAGGAAACATGA
TAATAGTGAAAGAGGAGGATCGATTAGCAATCGTTGTGGAAAATATCTGT
CGAGATGTTGCCATTGTCCCTCGTGGAGCTTTTCTTAGAACTCCACTGGG
TGAAGTCATCAAAAATAAAGCTTTCGAAGGTTTATCATCAACAGAAGCCC
TACGCTTGACGTCATATTTCCATTTTCGTGATCCTATACTTCTTCACCAA
AAGACTCTACTAGAACAGGCTGATTTGGACAAAGCGATTGACTTTTTGGA
CCCTATCGTGACTGACATTCCTGTTGACGGTTCATGGAGCATCCAAGCAG
AACGTGGTCACAGTTTGATTGTTATTCGAAGTCTTCATTGGTTAGGTTTT
ACATTCTACCATGTGCCGGAGACCAACTCCTATGGATATGTTTATTTTGG
AACTGGTGAAAAGAATCTTGATCTTCCTTTCATGTTGTAAatgAATTCAG
AtagtttaaatcaaaatattgattaTGTATCAAGCAGTGGACATATTTTG
AGTGTAGAGCAAAAAGCTGCACTCCAATCATCCCTTGTCATTCTGAAAAa
ccaacaaaaatttaaaacagttgaATTTTGGGGTAAAGTGACTGGAACTA
AAAATGAATATTTCATTGTACAAGGCATTGGTACGGATCAAATCAAAGAT
AGAAAAACGCTATACAGtttGGATTGTATAAAATGGGGGCTGATGCCAAC
TCCGAATGAAGAGACAAGGAGGAAATGTACTTTGATCAAAGGACGGTTCA
CAGGAGATCCTTCACATGAATATGAACATTCTGAGAAAAATAATGATGAA
GAATTGAATGAAGAGGAAGGAAACATGATAATAGTGAAAGAGGAGGATCG
ATTAGCAATCGTTGTGGAAAATATCTGTCGAGATGTTGCCATTGTCCCTC
GTGGAGCTTTTCTTAGAACTCCACTGGGTGAAGTCATCAAAAATAAAGCT
TTCGAAGGTTTATCATCAACAGAAGCCCTACGCTTGACGTCATATTTCCA
TTTTCGTGATCCTATACTTCTTCACCAAAAGACTCTACTAGAACAGGCTG
ATTTGGACAAAGCGATTGACTTTTTGGACCCTATCGTGACTGACATTCCT
GTTGACGGTTCATGGAGCATCCAAGCAGAACGTGGTCACAGTTTGATTGT
TATTCGAAGTCTTCATTGGTTAGGTTTTACATTCTACCATGTGCCGGAGA
CCAACTCCTATGGATATGTTTATTTTGGAACTGGTGAAAAGAATCTTGAT
CTTCCTTTCATGTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030475XLOC_030475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047892-proteinTCONS_00047892-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047892-exon-scaffold_139-1491911889:531258..531626TCONS_00047892-exon-scaffold_139-1491911889:531258..531626Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:531258..531626TCONS_00047892-exon-scaffold_139-1510915933:531258..531626Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:531258..531626TCONS_00047892-exon-scaffold_139-1575043694:531258..531626Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1491911889:531793..531952TCONS_00047892-exon-scaffold_139-1491911889:531793..531952Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:531793..531952TCONS_00047892-exon-scaffold_139-1510915933:531793..531952Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:531793..531952TCONS_00047892-exon-scaffold_139-1575043694:531793..531952Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1491911889:532732..532861TCONS_00047892-exon-scaffold_139-1491911889:532732..532861Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:532732..532861TCONS_00047892-exon-scaffold_139-1510915933:532732..532861Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:532732..532861TCONS_00047892-exon-scaffold_139-1575043694:532732..532861Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1491911889:533143..533231TCONS_00047892-exon-scaffold_139-1491911889:533143..533231Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:533143..533231TCONS_00047892-exon-scaffold_139-1510915933:533143..533231Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:533143..533231TCONS_00047892-exon-scaffold_139-1575043694:533143..533231Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1491911889:533472..533532TCONS_00047892-exon-scaffold_139-1491911889:533472..533532Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:533472..533532TCONS_00047892-exon-scaffold_139-1510915933:533472..533532Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:533472..533532TCONS_00047892-exon-scaffold_139-1575043694:533472..533532Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1491911889:533759..534300TCONS_00047892-exon-scaffold_139-1491911889:533759..534300Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1510915933:533759..534300TCONS_00047892-exon-scaffold_139-1510915933:533759..534300Clytia hemisphaericaexon
TCONS_00047892-exon-scaffold_139-1575043694:533759..534300TCONS_00047892-exon-scaffold_139-1575043694:533759..534300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:531258..534300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
109.726	107.364	159.448	153.517	143.531	102.33	83.2363	86.4502	68.2225	74.4198	56.4965	65.9183	14.9794	14.6121	14.2888	15.9209	23.8111	22.5651	16.7102	21.7712	20.9656	18.8556	32.6992	29.0806	149.662	115.828	25.3885	24.1857	10.6547	10.7501
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006802Radial_spoke
Blast
[Close]
BLAST of TCONS_00047892 vs. Swiss-Prot (Human)
Match: RSPH9 (Radial spoke head protein 9 homolog OS=Homo sapiens GN=RSPH9 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 6.115e-93
Identity = 142/277 (51.26%), Postives = 196/277 (70.76%), Query Frame = 2 
Query:  143 MNSDSLNQNIDYVSSSGHILSVEQKAALQSSLVILKNQQKFKTVEFWGKVTGTKNEYFIVQGIGTDQIKDRKTLYSLDCIKWGLMPTPNEETRRKCTLIKGRFTGDPSHEYEHSXXXXXXXXXXXXXXMIIV--KEEDRLAIVVENICRDVAIVPRGAFLRTPLGEVIKNKAFEGLSSTEALRLTSYFHFRDPILLHQKTLLEQADLDKAIDFLDPIVTDIPVDGSWSIQAERGHSLIVIRSLHWLGFTFYHVPETNSYGYVYFGTGEKNLDLPFML 967
            M++DSL  +++  S SG  LS +++A+L +SL+++K   ++  V FWG++ G   +Y+I QG+  DQ+  RKTLYSL+C +W L+P   EE   + +++KGRF GDPS+EYEH+E     E  +     I+V  KEE RL  V++ I + VAI+PRGA  +TP G    N+ FEGLS +EA +L+SYFHFR+P+ L  KTLLE+ADLD ++DF+D +  DIP  GSWSIQ ERG++L+V+RSL W G TFYH P T +YGYVY GTGEKN+DLPFML
Sbjct:    1 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVNEGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSEAKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIP-KGSWSIQMERGNALVVLRSLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML 276
The following BLAST results are available for this feature:
BLAST of TCONS_00047892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSPH96.115e-9351.26Radial spoke head protein 9 homolog OS=Homo sapien... [more]
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