TCONS_00047899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047899
Unique NameTCONS_00047899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047899 ID=TCONS_00047899|Name=TCONS_00047899|organism=Clytia hemisphaerica|type=transcript|length=2208bp
ccagtggcACGTTCCCGTctgccgtcaagGATTGATATGGAGAGATATAA
TATTGAGGGAGCACAGAGAAGACTTTACCAGATATCGAGACAACTCAACA
ACTCGCTACACTACTATTCTGAAACACTACATGACATTAATTTCGATCAT
TTCGCAAACCTTCCTCCAACAGAGTTGGAACCAGAGCGTGGTTATGATTT
CAACCTTGTCAATGAAGGGCAGAATGTATCTGGCTTAAAATGCACGATTT
GTCATTTATTTTTGCGTGAAACACACTCAACACCGTGTCACCACGCTTTT
TGCCGTGGATGTCTCATGAAATGGAATCAACAACAGCCCAGTAATGCAAG
GGGCTTAAAAAGATGCCCAAGCTGCAACGAACATTACGATCCTAAAAAGA
TTTCCTTTAATGGAGTGGTTGATCGAATGGTGAAAAACGATATCGACGTC
AAATGTCCACAACACGAGAAAGAATGTCAATGGCAAGGAAAAATCATTGA
CTATAAGgaTCACGAGGAAAAATGTGATTACGAGATGATACGGTGCAAGA
ACAAAGGATGCCAAGAAAATGTAGCCAGACTCAAAATGAATTACCACGAG
GGAAATTGTGGATACCGAAGAGTTGAATGTGACTTTTGTTGTTTGGAGAT
GTCAGCTCGTGAAATCGAAAATCATCACGGAGAATGTCCTTTCATAAATG
TGGAATGCCCCAATGATGAATGTCAACTCGAATATCTTCGACAAGAGATT
CCCAAACATTTGGCTGAAGAATGTTTGTACGAAAAAATTGCATGTGAATA
TTCTGATGTCGGTTGCAACCAAAAAGTTCAACGCAAAGACATGGAGGAGC
ATAACAAAATCAACCTTGCCAAGCACCAGAAACTGATGCTTCATGATTAc
aaattgatgaaaatgaaagttgcCGAGGTCGAACGATCCAACAAAGAATT
GAGAGACGAACTCAAAAAAGCCAATGAGAAGAAACCACAAAGTCAAAAAC
CAGTTCTTAAAAATAAGTTCAAATCGCTCTATGTTACGGAATCTGAAGAT
TATGTTACGGAATCTGAAGATTCCGATTCCGATTGATTCCATTCCAGTCT
TAAAATTGGTTTTTATAGTAGGcggccaagcctggggttccgtgacatct
tttactAGAATACAGCCGCTTGAAGTTCAACAACATACCGACTTCAGTAC
AATGAAGACAAGATTcgacgtcaaatcacagtagagctgacagttagttg
gtattcctttgtgtgttttagtcagagagttgttgtaatacattttttgc
tcagaatttcatgctctatcagatggtaccaatcattttcgtttattttg
acttttgaaaataagctatttctctACTCCTCATTTTTTCCTTACAGTTt
cgcctatggcgtcactatattggtcataaaaagttttcccgggtcTAATC
CGCGTCTttcctctcaaaaatatcttgtaatatactgttcttttgaatag
actgaaaatggctaggtcgtagaaaagatttCACGGGACccaaggcttgg
ccccctactattagGTAGAACATACTCAGACCTAAGTATCTATTAGCAAA
AATAGAATTGCAGGAATAAACTGCAATCTATACAAATTGATATTATTCCG
TTACGATTATTGTATTACTTTAAAACTTAATTAAATCGTTAGCCAATCTG
GAAAACCGTCTCATAAAATCTGCCCCTCTTTGTTTCGAGTTGCTGAATAG
CTTTCGAATTTCCTCTGCCCGACTTTAAGTGCTTGAAGATCTGAGATATT
AAAATTGACTCATTGAACATTTAAGAAAAGTGAAACATACCTAAATTTTG
AAAGAACATAGGTAAGTTACATTTGGAGAGGTCAGTGCCTTAAAACTTTT
GACATACAAAAATTTCCAGGCTGTCCATCAAGAATAATAAAATCGATATT
TCACTTCCTTAAAAGTATAATGTTCGAAATAAATTATATTTACCGTAAGc
ggattaattttggcgtgggtttaatttggcgaaaaatgttgtttttggag
aaaaaaaaaggaattaatacagtagagtctccctTAACTCGAAACTCTAT
TAACAGAATGTCTCCCTAAATTAAATGTTCCTTAGTTTATGTTTTGTTAC
TCGTtgtaagaaataaataaacaaaatactTCATTAGTTGTTTAACACTA
TGTGTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_139:640553..657317+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047899 ID=TCONS_00047899|Name=TCONS_00047899|organism=Clytia hemisphaerica|type=transcript|length=16765bp|location=Sequence derived from alignment at scaffold_139:640553..657317+ (Clytia hemisphaerica)
ccagtggcACGTTCCCGTctgccgtcaaggtcagtgcccccccccccccc
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTACTAGTTTGACac
taaaattgtttaaaatcaGCACCCTTCTTATATTGTTTCTTTTTGGCAAA
TTTATTGCTCTTACCAAAAAGTGTACTTATCATTCTACTTTCTACTGCGT
TTGTGAATCGTTTTCCATGCCATTTCATACAGTCTGTTCCAAGAAAAGCC
GACCAGAATCTATCAAAGCttattaaaaatcttttgtcttcaataaatta
ctttttattttattacgtTCAATATATTCTGGATTGCCCAAACAATTAAT
TAATTTGACTACACAAAGGATTGATATGGAGAGATATAATATTGAGGGAG
CACAGAGAAGACTTTACCAGATATCGAGACAACTCAACAACTCGCTACAC
TACTATTCTGAAACACTACATGACATTAATTTCGATCATTTCGCAAACCT
TCCTCCAACAGAGTTGGAACCAGAGCGTGGTTATGATTTCAACCTTGTCA
ATGAAGGGCAGAATGTATCTGGCTTAAAATGCACGATTTGTCATTTATTT
TTGCGTGAAACACACTCAACACCGTGTCACCACGCTTTTTGCCGTGGATG
TCTCATGAAATGGAATCAACAACAGCCCAGTAATGCAAGGGGGTAGACAA
CATTATTCACCCGTATTCCAGTCTTATCACATAGAGAAAGTGTCTACTTC
GCGTCGTAGGGGTGGCACAGTCACTTTCGGTCGGGGTTGTGGATGGTGAA
ATTTTTCGTTTTTTTTTAATGTTGCGATGTAGGCACTTTCTCCCTCCTCT
TATAGATACATGTTATAATCCAAGAAAAGATGGTTTATTGAAGCTAAGAC
ACAAGTTTCACTTCAAATGTGCACAGCCCTTTATCCTAACAACCTCAAAA
ATGTTTTAACGTGTCGCCTAAATCAAACACTGACACCACcccaattttct
gacttgaaaacaatggaatttaaatccctaaccaaaaaaatatgggaata
tcaatccccatcgagttgcggttcgttatttttaccccaaatgtttgaaa
aaattctaccggatctgtgagaagggggtctTTCTAGAGGAGACTCATAA
TTGTTGATCCAAAATCAGAATGAATGCGAATGTTTACTGGGTACAGAGGA
TTAAAATCTTTGACTCGACAAAAAGTGCTACCCgatctaccttaagggaa
ctaatttttgcaggaactaaattttgcggtttttgcggatttaggcccaa
accgtaaaattaagttcccgcaaaatttttcaaatgcgaaaaacaaaggt
cgaataattcacagtacggctctaattttttttcaagtgagaaatccgca
aaattaagttcccgcaaatattaaatattaaatgttgaactgcgaaccgc
aaaaattagttcccgcaaaaaatagttcccttCAGGTATCACAAAATTTC
TCTTTCATTGTTCTTTTAGAGAGGGGGCGGAAAGAAAGTTTTAGATCTAT
CTGCGCAGTAAAAACAAATACTTTCCACTAGCAAAATATGAAAACATTTT
AAGTGGCGGTAAAGGACTGTTAACCTGACTAAGCTTTTTAATATTCGTCC
CATAGCTTAAAAAGATGCCCAAGCTGCAACGAACATTACGATCCTAAAAA
GGtataaatttatataaatttctgttaattttgactgtttttaagttaat
ttcgcaaattttaTAGGGTAAATGGTTTTATCACGGCTCTAATTGGCTCT
AGATTAaaattttgaaggtttaaagacCGGTTTTAACCAACACCATACAC
TgactaaaaagataattaccgCGTCATAAAAGTCTGCTCTCCTACAAACC
CAAGAGGGGGTTGCAATGAAGGGAAATCTGCACATATTTTTAAACCCCCC
TCCGATGAATGGAATAGAGAGTGATCCGAAAGAGATGCACGAATcatatg
aaataggctaattagGACGCCTTTTAGTTTGATTTatgcaaaaaaggttt
ttctttcatCTGTAAATTTTACAAAGTTCCTCATTCGTTATCTCAAGACG
TTATTGGCAAACAAAACGATAGCTTAGCGATTACTGTTTCAGATTTATGT
GNAGAAAACTATCGATTATTGGCAAACAAAACGATAGCTTAGCGATTACT
GTTTCAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAAAAACGATA
TCGACGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGCAAGGAAAA
ATCATTGACTATAAGGTAATAACTAATTCTATCAGCTAAACCCCATTAGT
AATTTAGAATACtctggaaaaactttttctttgatcTTGTGGACTACAAT
TGAGTAGTATCTCTTGTTTAGACggtaattttttgctcagaTTTTCATGC
TCTATCCGATGGTATCAATCATTTTTGTCGAATTCGGGAAAACTCGCAAT
GTGGGTAAACAAAATCTTCGGCCTTCTCGATAAATTTCAGATATCTGAAT
CTGATGTTATTTCGACAAATATTAAACATATCATAGGGTTATAACATAGT
GTATAATGTGCTACTATTCCAAAATACATCAGAATTGTTGCTCGATTTTC
TGTTTCACTGTTTTCACATGTACTTcagtgttttcccttgtttttttatg
aatggTCCAACGAAATTCCCCTCCGGGGCTCCTAAGTAAGAAATAGCCCC
GTACTATGAGGGTGAAGTTAACTACAATACAAATATCAAGGTTCGTTATG
TCATTGAATACTTGCACTGAATATTTCCTTTTTTAAGGATCACGAGACAA
AATGCGATTTTGTAATGGTACCGTGTAAAAATAAAGGATGCAACAAAAGT
GTGGCTAGAATCAACATGGCTGATCACAAATCCATTTGTCATTATCAAAT
TGTTGAATGTGAATATTGTAGAAAAAAGACTACAAAACTCGAGTTTGGGG
TAAGTTTAACTGTGACCAGTTCTTAACACTTTCCGAGCGcataaaagttt
ttattttcgctACACTTTTCCCTAATAAAAACATAAGCGGGGTAATCAGG
TTGCTTCAAATGAGGagttaaattttggaaaaacttgCCGTGTATCGGTC
TTTGGTTAGCGAGGATCTGTGTCTCAGTTTCCCCCAGTATTTTGGGACAA
GGACAAACCCAGCATTCTCTTTAAAAACAACCGTACGTTCGGCTCAAAAT
TAGGCgttttgaaatcggacccttacattGTAGAGAAAGTTCCTGAATTC
GAAATTCCTTTCTTGATGCATAGAAAATATAGCATGTAACAGTCAAATAC
ACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNatcatatcactacccccgtttttagtaataagttggagatt
tgatatttcacagaaaagtgctaccaaggggtatttcaggtcccatatct
tccgaaggagttttctgtttgccttgaaattaaaaaacttcTTAGCCTAA
GGTTAAACTACCACTGGTATAAAAATGACCGTTAtattccactgccaatt
ataggGATTATATCTGGATAGACTTTAATTAACCAATTTTGCGTTTTATT
CTTGAATTTATCAGGTTCAACGCAAAGACCTGGATAAGCATAACAAAATC
AACCTAGCCAAACACCAGAAATTTATGCTTCATGATTACAAATTGATGAA
AATGCAACTTGCTGAGGTCTGCCAATCTAACAAGCAGTTGAAAGATGACC
TCAAAAAAGCCAACGAAAATATAGAAAGGCTGAACCCACGAAACCAGAAC
CAATTAAAACCATTATTGTGcggaaaaaagtatcgagtttgaacatgatt
ttgagtagaaggttgttgcgtgtgtttaacaaaatgtgaGAAAatatacc
aacacaataattgtttttacaacagtcattatgattaaaaagaatgaact
ttctttacaattttcatgacgttgaAGTTTTTAAGAattgctttttttta
atttagtgaaacacacattaagaactttctttctatagaagtggtacgac
tcgatactttttttccggacaccctgtattatcatttaatggagcgtatc
gaattagagagtgtcaactgtaaattatgaaaacaaaGACGACATTTGTA
ATTTCTAGAATCGAACctcttaatttttcaaagagagaaGCTGTTTTGAT
CACTCGAGCCTTTTTATAATGCATATTCACCATTACTTATAATGTAAGTC
CACTTCGGTATATAcatagactaggagcatttgacgaggttgtcattttg
aaaaagaatgtttaaaatccaaataacaaaaaaactacttggagttgaaa
gatataatcaaaaatgagaaacaaacatcaataacagatttgcaatccct
ttattctcaaataaaaacattgcttcatactgtttttatcttccaaaaac
aactaaaatctggcctAACTAAAGCCAAAAGCacattaccatatactacc
gggccacttaatcgcgccattcAGTCTATCATagagctttaagtggaccc
cgggctagtaTATACATAGAAGTCGAAAGACATACTAAACACATAATCTT
CACACaagatgaaattttcattaagaACAAGCAATTCACGAAGGAAATCA
TTTggaaaacaatgacgtcatcatttttttagtcaaaatcgCCTTTTCCA
AATTTCTGCTGACATAAGTTGGAGTTCACCAAGCCCTGACATGgggcaaa
atttcataatcttGATTTTTGATTGGTACTTTTCAAGAGATTctaatttt
aaaacatttctgAGATTTACATCCTAATACATTTCTTCGACTAAACAATC
TGGTCTAAAATCCCCCAGTCTTTTGCGCaaaatttatgatatttttggaC
ATGTCACAAGAGTTTAATTTATCTCAGGCTAACTTCCCTGGCTCCATTGA
CTTCAAAGCCCCGAAGAGGCTAGGTTATAAACTACTGGATCGGAAATAAA
GCCACTTtccaaacaaaaattcaaaatactttttcttgcttgagaaaggt
taaagattcatctctagccATTCAAACTCAATGCCTGGCTCGTGCCAAAA
GGTGTCCTTAGTTAATTTATTCTACTCTCGTATCTTTAATAGACGAGGGT
CTTGAATAAGCGGAAAGAGGGAAGAAGTGTtgagaatttttcaaatattt
agtgcCGAAAAGAATGTCGGGGTGGAAGATTATTAATCAGAATGTTCCGC
GTGGAAAATTAAAGGAGGCGTCTATTAGAGACCAGAAAGTAATAAAGTTG
GataaccaaaaagaaaaaagaccgCGTCTGATGTAAAAATAAATCgaatt
taaatatatattttcaataaAGATAATGTACAGAAATTTATTTTGGCAAT
GATCGAAAAATATCATTTCCAGGCtgtatttgttgtttttgtcgATAAGC
CTTTAGACTTGGTCATCTCGCGAGATGATTTGGTCGGTTTTTTCTTCATC
AGCCTTGTTTGAACCTAGAAATATCATTTACGTCCATTTCTTTTCAATGC
TGTTTCTAAGGCCTTTTCATAATTTGTTTTGAATGCAACGGCTGCCTCGT
TTTGAAACCATTACCAAGGTGATTATAAACCCCTTGAAAAGAGTGAACTT
ATAATGAACTCTTCTGGGAATCAATTACCATAGTGATATTTTGAAAACGA
GGTAAGAGTTGCACGTGACGTAATTTATGAAAAAGGTCTAATATAGCGAT
CGCAATAGGGTCTTTGTATAAATTATCTTTAGTGCAATGACTGCCTCGTT
TTGAAACCATGCCAAGGCAATATTTTAAAAACGAAGTAAGCATTGCCCGT
GACGTAATTTATGAGAAAGTCTTTTTTATTTCATTTTGATCCAGAAAAGC
AACCTTTAAGGGGATTGTGCTAAAAAGCGTGGAAAGATTTCggactactt
taatgggataaattttcgtggTTGAGCTCAtctgcgaaattttaagattt
tgcgaGGACTcaatttcgcggatggcattATCAGGAGGACAatgttttta
tgattttgtgtctttttactgCTAAATTATACATACTGCCTGTTGAAATa
tgcattattagcgcttctgacatttttagaaattttttgggaaaaatttt
tcTCGAATAAGACCTTTACAAATTTCCATAGGGACTTAATtgcgcggatg
acacccaacatttatcccattaaagtaggcACCAATTTTAACATCTTAAA
ACAAAGAGACTTACGTTCGTCGTTTTACTTTCTGCTTTCTTCGTATTTGC
ATTTTGTTTCGGTCTACTGTTTGGTTGAGGATTGCTCGTCAAGGATTTGT
TCGTTCTTGTTGACATTGTTCTCTCGTCTGTAGAATTGCCAAGCTCCCTG
CAAACAGAATGTTAAATATTGCTTAAGAAGTATCATtaaaaaaggcttta
aaagtATAGCATTGGGGAAAATAATTTGTCCCGTCCGacacttttttgta
aaaatctacAGACGaaagtttttatcaaaaggttCACCGTAGACTGACAA
ATAAATAACAATCAACTTACTTGACCagtaaatttttcagcaaatgAACC
AGTTGTACATCACCACTGCTTACGACACCATCTTTCATGTCATTAGTCGT
TACCATAGCATCATTTTGCTCTGGTATTCGAGAATTTGTCTGAGGAGAAT
AAAAAAGTAGATTGTCTCATCCTTAAGGGCGATCTCTTGACGGTAAATTT
TTTTAGCTAAAGCGTCTTCCATGGTATTTACAAACTTGCTATCGATATAC
CCTGGGTTTAGATTCTTGCAAAGAACTGTTTTAATGAATAGACGGGTTAG
CTTGGAGTTAGCCGGGATACCCAGACCGTAAACTTTATTACAGtctattt
tattatattttgtcTATTGTTTAACTAGATCGTTTAGATTCAACTCCGAG
GATGTAAAAAGTGATTGGCCAATGCGAGCCCACTCGTTTAACTCGCTTAT
TAAGATTTTCACGGGGTTTTTTGTTACGCCCCGACACATTACAGCGCCCG
AACAACTTTTTGTGAAGATAATGAAGAACACCaaaacatttcaacaacaa
agtGGGTGGTTGTTTGCATGTGACTGACTTTTCGTTGTTGTTCAAATCAG
TTTTTACATGTTAAGTTGATTATGTGCATGTTTCGCttgtctgcctgggt
tttgaGGTTTTGTCAACAAGGATTCACTCTCAGACAGTGTCAAACAAATT
GTATCAGACTCTTGGTGCACAAGACTTTTCGTATGTTGAGGAAATTTTAC
TTTCTATAAAATTCTGGATGCCTAGACTGGCTTGAAGTATAAGAGGAGTC
GAAAGAACATGCACGTCGACATAAAAATATAATGATCAGGACAATGTCAT
AGAGTTACAGTTGTCTCTCGCTAATTtgaactcgaacggggaatcttatt
tgtttatGGAAAGTATGGGGACTGGGAATTTATCCagattatagaaagat
tcgaatacgcgaataagcgagagtcaactgtacgaGCAGAAATAGTAAAA
CTCGTTCATTCATTCGAAAGTACATGCTAGTAGAAAATGAGTGAGTAGGA
CAATGACAAATATGTATAGTAAACTCATTCATTCATTAGCTCAAACTTTA
CCTCTTGCTTCGATTGTCGGACAACTGATTTTTTGAACGCCTTATTCATC
TTTATTGGTTGTTTTTTGGGCGTGTTTTGAGATGAAGAGGGCGgtggttt
ttctttttgtaggaGTTTGTCTACTTCTTGAGATATAGAGACTGGAACTC
GTTCTGTGAGAGAAAGAAACATTATTCAAGTCGAACAATGTCGGAATGAT
ACAGGGGATGTTCAAAGGGTGTGGACGATAAATTTTTTAGTGTTGACGCG
CAAGGTAGAAAACCCATTAAAGGAAGACATTTTTAAAGGTGTCCAAAAAG
ACTTCTCAGAGAGAATTTGATTAGGCGGATAAATGATATTTTTGGACTAA
AAACGTTGGCAAAAAGGCAAAAACTATTTCAGCTctgaaaaagtataaaa
ttaGATGGGGAGAACGCACGAAATATCTTTGACAGATATCAATTGGAATT
CTGAATAACGAAACCATACCTTTAGGGAACTGATTTTCGCGGTGCGAGGG
TACTAAATTGGCGTATTTTGCAGAACTAACTAACTTTTTGCCGAAATTTT
TCATATTCCTAGgggtttttgaggatttttagtAAAGATTGCATTTCgcg
agaacttattttcgcggtgGACAACCAAAgacgcaaaaattagttccgca
aaaatataagtttccacgaaaattagttcccttaaggtaccttCATGTTG
GACATCATCTTTGACAGGAATTTCATCCAACGGTTGGCCTGGTGATCGTT
GTAATAACTGAAAGAGCAAAGGAAAGTAGTAGCTAGAAGAAATGTCTTTT
ATAAAGATACATGATACACGACTTGAAATCTCAAACATAGAAACAAACCA
aaacatttcaggctgaaaataaccaaacagaaaaaaaaaggaTTCAGCTA
CATATTACTAGAGAGACTACTCTCTGGTGTCTGATAGAACGGGTACCATT
GCCAATTGATACTGATTATATCTTCCAAAAGAATTCCTTAATACTCTTAG
ACCGAGATTTTACTCGATTTATTACTAGAAGTACCTCATAATAAATTATT
TACTGAATAAAATTCCATTTTGTTTTGTGTAAAATAAACACTTTGTAAAA
CGAGATGTCAACTCATGtcactaaataaaaaatatgacccaAACTCAAGT
ACACTACACTgcactacacgctttttcttttataagattgtactctataa
gaatattcatgatgagaTTGGCCAAAAATTTACGGATGTGCTTAGAATAC
AGGAAAGAATGGTGTTTCGCCATTCGATGATGGTGGTATTCtaagcatat
tcttaattttttggctaattttatCATGACTATTCTTGTAAAAGAAAAAG
CATATAGATCATTATCATAGAATTTGGTAACTGAAActaaaattgtcttt
tttggGGGTTTAAACTGCAAATTGTTAGCTTTCTCCCAGTGTTATGATTA
CATGTTAAACCGAACCTAGGAATtccttaagaatatttcaagatgaattt
actcaaaaagttaaaagaatatccatgacgaaatggaaaaaaaaacattc
ttataaaaaagcatgcGAGATCTAATTACTTTTGCAAAAATGCAAGCATC
AACAAAAgtactttcatttttaaaacaagaaaggaaaaaaacaaTGTTAT
GTTATTGTTGTAAAAAACTGAGCAGTGTAACGCTTGCTTGATGTAGAGAT
TTTGTTTCGTCGAAACATCAGGAAACAGGTAAAATAATATATTCATAACT
GAATATTTATTAGACATCAATAGTCAATAAGTCTTGTACATTGAAGGAAA
AAGATTAAATCAGTTGTTCCTGGTCTTACAACTTTTCTTAATCGAATCTC
CGTCAAGTTCGACAGACCATTTTGGATATCAGACGtgcgataaaatgaga
tatGGTATAGCGATAGTCAATGGCTATTACTATCACAGGAAGTTTGTTTA
AAGTCAACGAGGATTGATTAATTCTATATCACATATTTTTTAATACATCA
CATATTATGCTATTCTACTGTAGTCAAAGGTGGATACCTTCTCTTTTGAA
CAACAGCGAGTGATTTTTAAATATTACCTTGTATTTTACAGTACAACACT
CGAACTAGCCGAATAATGTCTTATAATATTCGAAGACACACTCAAAGGGC
TAGAAGAAGAACAAGAAGTCCCTCGATAGAAAAGTATAAGCCAATCAAAG
TAGAGTATGGACGTGGTTATGACTTTGACCTTGTCAATGAAGAACAGAAA
GTATCAGATTTGGAATGCACAATCTGCCATTTACTTTTGCGTGATGCGCA
CTCAACACCGTGTCATCACGCTTTTTGTCACGGATGCTTGGTGAAATGGA
ACAATGAACAACCAACCAGAAGAAGAATGTAAGCATAAAAAacgatacac
gcttttttatatataaatatcttctataagaatatcagggtgaaaatttg
ccaaatcgtaagaataccctaagaataccctctagggtgaatttcaaaga
atttgataagaatacagtcattatgtatttggttaacagaaaaactgctt
cctttgttagagataaaattgaaactttgaggAGGAAATGTgattttaac
ccaaatgttcactcaaaagttcaaaactctcaaattgatcatttctcatg
tttgtaaaacaggcaagtctaaaaaagtaagaatatgttaagaatatttc
accctcaattctggcaatttcttaagaatacttgaccctcgctcatccaa
agtacactattcttataaaaaagcgtgtattcttaTACCAGCAGAAAGCT
CGTTCTTTGTAAAANaactattcttataaaaaaagcgtgtattcttaTAC
CAGCAGAAAGCTCGTTCTTTGTAAAAATCTAAGAGTAGCTTTATAAGATT
TCCACAGAATGACTGGTAATCGTGGACCAAAATTGGGCCTAAATGAAGAG
GTAAGTTTCGTAAGTTGAGATTTTTAGTGCCCCGTAtgtataaaaagtaa
aatatgtTTGTAGAAACAACGCGAGGGATGAAATTTTTGGGTACCTTTTC
TCTGGTTaatcttaaaaaattaaaacacgAAGAATCGGTCGCTGGGACGG
GGACAGCTACCCGCTCTGCTGCTACTGCTTGTAAGAATAGAAGTCATTTA
TATTCGATGACATTCCTCTCGCGAATATATTTtctacaaacaaaaaatgg
ttaTAAATTTTATTCCGATTGTTTCATTTCAGGTCGACACGTTGTCCAAG
TTGTAATGTACAATATGAtcctgataaggtaggttttattattttatcat
tcataaaattttaacaagttctTTTTTCATTGATCTTCATAACTAATATT
CTCAAAATACTCACTACCAAGAGAGCAttaaattctgagcaaaaaatgta
ttacaacaactctctgccTAATCCgagtcctccctctcaaaatatcttgt
aatatactgttctttggaatagactggaaatggctaggtcgtaaaaaaga
tgtcacgggaccccaggcttggccccgtACTAATGGGCACAGACTTTTTA
GGAAAAGATTTTGGATAAGccaataataattttttttatagatttcctTT
AATGGAGTGGTTGACAGGATGGTGAAAACAAGTATCGATGTCAAATGTCC
ACAACACGAGAAAGGATGTCAATGGCAAGGAAAAATCATTGACTATAAGG
TAATGGCTCGTCGTCACTCTgcgaaaatgatttttgaacatttttgttTA
GATTCGTGGTATTTATACGGAAACAACCAAAATAGCCCGGGTGTTTGCCA
CAAATCTTATTGTTTATGTTCAAAATTCATGGCAAACATCTTTTTTGGAG
CTATCATATAAAatattacatcatgaatatcacgaataaGACTTGGTTAA
AGTTTGCAGTGAGCCTTTTTTTATACATTAGTGTGATCTTAAGTGGGGTC
TACTGCTATTTACTACCCGTTTCGAAAACAACGACTTGATTATCATGACT
GGTAAAACATTCAGACACGTCTTAGTACGGAAAAGACATTGAAgatcttt
ttttaattattacGTTGAACGACATCCCCGCATCACACCTTCGTTGATTA
AAGAAATTGGTGGAAGAAGTAGTGTTTTACTGTATACTGTTTAATTTAta
tataatttattattttaggaTCACGAGGAAAAATGTGATTACGAGATGAT
ACGGTGCAAGAACAAAGGATGCCAAGAAAATGTAGCCAGACTCAAAATGA
ATTACCACGAGGGAAATTGTGGATACCGAAGAGTTGAATGTGACTTTTGT
TGTTTGGAGATGTCAGCTCGTGAAATCGAAGTGAGCCTATTTGTGCGTGG
GTCGATACTGGAACTAACCCAACCCCATCAATGAGTTAGAATAACCGTCT
ACAATAAACCTGGGAGGGAGAAATCTTAATTGAACAGATTTTTCTGTCTA
CAAAAGGAAGAATAGCGACAATCCCAGTCTCTTCGGAAAAATGCCAACAT
CTTGACGCATTTTTCGGACAACCGATATATCTTCTTTTTCATCTGATTTT
ATAGAATCATCACGGAGAATGTCCTTTCATAAATGTGGAATGCCCCAATG
ATGAATGTCAACTCGAATATCTTCGACAAGAGGTAAAAATCGATTCCAAT
TTTATGCTACTTGAGTTTGGTCTTACTTAGTTATAAGTAAAAAGAAGTAT
actcatctggtggctgtctattttcttttttatttgcgCTANTACTTAGT
TATAAGTAAAAAGAAGTATactcatctggtggctgtctattctctttttt
atttgcgctagacctagGAGATcaaatgctgaggtggagcgccacaccaa
CTCTCAGCTCCcaaccgcctagatcagattaccttAGATTAAGCTACTCA
TTCGCTGAATCAGCGGTAACCGGGGATCTAATCCACAGCCCTTTGATTGT
AAGGCaaaatgctctaccgactgagctaccagGTCGCGATACTTCTAGAT
TGgatgaatgaataaaaagaaggttacaaagaatttcttttctttcttta
ttgtACAGATTCCCAAACATTTGGCTGAAGAATGTTTGTACGAAAAAATT
GCATGTGAATATTCTGATGTCGGTTGCAACCAAAAAGTAAGTGCTTTATA
GAGGTTTCATCCATGACGAGAGCTTTTTAGAGGGAGGAGCGGGCGCGCGC
GCGGAAAGACAAAGAAACAGAGAGACAAATAGTGTTAGGCGCACGCGTCC
TTAATGACTGCAAAAAGTCATCTCCTTTTAATCGCATACGTCATTTTATT
TAAACgcacaaaacaattaaaaatatttattcatttcttttgtatcaTTT
ATATCATTTATACCTTAGGGATTTTTTCTAGCATTTCAAATTACATTCAG
ATTTTTTCGTATCagttcaattttttcataatCATTTAAGTGTCTGTTGA
GGCATCATATGAGGAAAATGTGAACTCATCtcaaaatcaaactttcaaag
TTAACCTTCAAATTCAAGTCAAGTCAACTTTCAacatcaaattttcaatt
ttaatttattggACAGAATTTACACCACATTTATTTCTGGCAAGTTGGta
agaatttatttaatttattaacTTAGATTTCTTTTATTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTGTCATCTAGATtaaatcttgtcatttttttattcattcagt
ttGAACTCTATCATCAAAAGTTACGAACACTTGTGTCCATTCATTTTCTG
TCCGGCTACAAATAGTCGTTCTAAGATTATGACTGTCAACAGGTTAACGA
TAAAAAAAATCAGCGCAAATTTTTGAAGCACAAGTAATTTTGAAAACCTT
AACCAACGACGGTAGCTTATATTCGTCAGTGTTGAGTTTTCATTCCTTTG
ACTAGAATAACACATAAATACTGAACATTGGTGCTCAGGTGCTCGGGAAC
GTTCTAAAAATACCAGAAAACGCTCTTGACTACATAGAGATATTGAAAAA
TGACAATGGGTGCATAATCTGATCGTTcctgaatgttcttaaatgctcAG
CATCAATTTTCAAAGAACTTGTACAAAAAAGCGTCCCTGAGCTTTCATAG
ACTTTACCGTGATATGAAGCGCCTACGCTTGGTTTGGGCCGCAGATATAA
TAGAACTAGATCATAAATGTATAAAATGAGTGTTCAGGAACGTTCTATGT
AAGTAATGAATGCCCAAAAGAACGTTCCATTTCATAACATATAAACACTT
TGAGAGCTTTATCTTATTCTTGAATTTATCAGGTTCAACGCAAAGACATG
GAGGAGCATAACAAAATCAACCTTGCCAAGCACCAGAAACTGATGCTTCA
TGATTAcaaattgatgaaaatgaaagttgcCGAGGTCGAACGATCCAACA
AAGAATTGAGAGACGAACTCAAAAAAGCCAATGAGAAGAAACCACAAAGT
CAAAAACCAGTTCTTAAAAATAAGTTCAAATCGCTCTATGTTACGGAATC
TGAAGATTATGTTACGGAATCTGAAGATTCCGATTCCGATTGATTCCATT
CCAGTCTTAAAATTGGTTTTTATAGTAGGcggccaagcctggggttccgt
gacatcttttactAGAATACAGCCGCTTGAAGTTCAACAACATACCGACT
TCAGTACAATGAAGACAAGATTcgacgtcaaatcacagtagagctgacag
ttagttggtattcctttgtgtgttttagtcagagagttgttgtaatacat
tttttgctcagaatttcatgctctatcagatggtaccaatcattttcgtt
tattttgacttttgaaaataagctatttctctACTCCTCATTTTTTCCTT
ACAGTTtcgcctatggcgtcactatattggtcataaaaagttttcccggg
tcTAATCCGCGTCTttcctctcaaaaatatcttgtaatatactgttcttt
tgaatagactgaaaatggctaggtcgtagaaaagatttCACGGGACccaa
ggcttggccccctactattagGTAGAACATACTCAGACCTAAGTATCTAT
TAGCAAAAATAGAATTGCAGGAATAAACTGCAATCTATACAAATTGATAT
TATTCCGTTACGATTATTGTATTACTTTAAAACTTAATTAAATCGTTAGC
CAATCTGGAAAACCGTCTCATAAAATCTGCCCCTCTTTGTTTCGAGTTGC
TGAATAGCTTTCGAATTTCCTCTGCCCGACTTTAAGTGCTTGAAGATCTG
AGATATTAAAATTGACTCATTGAACATTTAAGAAAAGTGAAACATACCTA
AATTTTGAAAGAACATAGGTAAGTTACATTTGGAGAGGTCAGTGCCTTAA
AACTTTTGACATACAAAAATTTCCAGGCTGTCCATCAAGAATAATAAAAT
CGATATTTCACTTCCTTAAAAGTATAATGTTCGAAATAAATTATATTTAC
CGTAAGcggattaattttggcgtgggtttaatttggcgaaaaatgttgtt
tttggagaaaaaaaaaggaattaatacagtagagtctccctTAACTCGAA
ACTCTATTAACAGAATGTCTCCCTAAATTAAATGTTCCTTAGTTTATGTT
TTGTTACTCGTtgtaagaaataaataaacaaaatactTCATTAGTTGTTT
AACACTATGTGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030480XLOC_030480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047899-exon-scaffold_139-1491911889:640553..640581TCONS_00047899-exon-scaffold_139-1491911889:640553..640581Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:640553..640581TCONS_00047899-exon-scaffold_139-1510915933:640553..640581Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:640553..640581TCONS_00047899-exon-scaffold_139-1575043694:640553..640581Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:641021..641344TCONS_00047899-exon-scaffold_139-1491911889:641021..641344Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:641021..641344TCONS_00047899-exon-scaffold_139-1510915933:641021..641344Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:641021..641344TCONS_00047899-exon-scaffold_139-1575043694:641021..641344Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:642308..642353TCONS_00047899-exon-scaffold_139-1491911889:642308..642353Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:642308..642353TCONS_00047899-exon-scaffold_139-1510915933:642308..642353Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:642308..642353TCONS_00047899-exon-scaffold_139-1575043694:642308..642353Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:642860..642967TCONS_00047899-exon-scaffold_139-1491911889:642860..642967Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:642860..642967TCONS_00047899-exon-scaffold_139-1510915933:642860..642967Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:642860..642967TCONS_00047899-exon-scaffold_139-1575043694:642860..642967Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:653621..653782TCONS_00047899-exon-scaffold_139-1491911889:653621..653782Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:653621..653782TCONS_00047899-exon-scaffold_139-1510915933:653621..653782Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:653621..653782TCONS_00047899-exon-scaffold_139-1575043694:653621..653782Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:654007..654084TCONS_00047899-exon-scaffold_139-1491911889:654007..654084Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:654007..654084TCONS_00047899-exon-scaffold_139-1510915933:654007..654084Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:654007..654084TCONS_00047899-exon-scaffold_139-1575043694:654007..654084Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:654511..654588TCONS_00047899-exon-scaffold_139-1491911889:654511..654588Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:654511..654588TCONS_00047899-exon-scaffold_139-1510915933:654511..654588Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:654511..654588TCONS_00047899-exon-scaffold_139-1575043694:654511..654588Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1491911889:655935..657317TCONS_00047899-exon-scaffold_139-1491911889:655935..657317Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1510915933:655935..657317TCONS_00047899-exon-scaffold_139-1510915933:655935..657317Clytia hemisphaericaexon
TCONS_00047899-exon-scaffold_139-1575043694:655935..657317TCONS_00047899-exon-scaffold_139-1575043694:655935..657317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:640553..657317 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.161313	0	0.481111	0.257745	0.525465	0.562554	6.02964	8.15177	7.84341	5.65231	2.57801	3.03117	4.60199	3.06136	3.29172	2.96046	2.58131	3.86731	4.80611	3.11531	6.01335	9.27894	4.46321	4.56075
Blast
[Close]
BLAST of TCONS_00047899 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.989e-22
Identity = 70/246 (28.46%), Postives = 117/246 (47.56%), Query Frame = 1 
Query:  154 ANLPPTELEPERGYDFNLVNEGQNVSGLKCTICHLFLRETHSTPCHHAFCRGCLMKWNQQQPSNARGLKRCPSCNEHYDPKKISFNGVVDRMVKNDIDVKCPQHEKECQWQGKIIDYKDHEEKCDYEMIRCKNKGCQENVARLKMNYH-EGNCGYRRVECDFCCLEMSAREIENHHGECPFINVECPNDECQLEYLRQEIPKHLAEECLYEKIACEYSDVGCNQKVQRKDMEEHNKINLAKHQKLM 888
             NL  + +E  +GYD     +    S  +C IC + LRE   TPC H FC+ C++K      S      +CP  NE     ++  +    R + + + VKCP   + C  + ++   +DH+  C++ ++ C    CQ    +  +N H   +C  R+V CD C   M+  + E H   CP  NV C  + C    +R+++P H   +C    I C +S  GC++K+QR  +  H + N   H +++
Sbjct:   43 GNLSSSFMEEIQGYDVEF--DPPLESKYECPICLMALREAVQTPCGHRFCKACIIK------SIRDAGHKCPVDNEILLENQLFPDNFAKREILS-LMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC--EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRML 273
The following BLAST results are available for this feature:
BLAST of TCONS_00047899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF62.989e-2228.46TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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