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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047904 ID=TCONS_00047904|Name=TCONS_00047904|organism=Clytia hemisphaerica|type=transcript|length=2236bp
gtgtggGGTAAAAGGTTATACTGTATATATTATGCTGCAAGAGCACAGAG
AGGTTACCGAGTTTAGACTTTCGAAGTCAACTCTTATGTTCTTTAAAAGA
AGCCCCAAGCAATTAGCATGAAAGTGTGCGTGAACCGGCGAATGCGTGAA
ATGGAAAACTTGTGTGAACAGAAATTGCGTGAATTACGAAAAGAATTACG
TGGATGCatgaattttggaaaaagaattgCGTGATTgagtgaattgaagg
tccgcttTTCATAAAACATTTTGGGTCCTTTTGGGAATTAAAAACATAAG
TAATatgttttgaaacaaaatcGAGCATAACAGAAAGTGGATTTCTATTT
TAGAACAAGCTGttgctaaaaaaaacaaaaaatggaggAAAATAACAACA
CGTAAGGATCATGGACTTTGTAGTTTCGAACACAGATAATCGTAAATCCA
TCATGTCTTGGTACAGAGCACGGAgaagtattttcattttgttgtgtTAT
GAATCTCTCCTGTTTGGAATCGAACTCACCATGCTTGAACCGACCGAATA
TTTCTACTTCAAAGACGTCTTACGTGTTAACTCGCCCATCTTATGTTATA
GTTTGTCGCTAGCTTTGAATGTCTGGTCCTCCCTCATGGCGTCCATATTT
GTTagtcacgtgatcaaaaagtatcaCGTGTTTACATCCGCCATGttgat
tttatgtttgatttcAACAGTCGGTCATTGTATGTATTTCGTTAGCAGAT
CTCCTGCAGTCATCATTATGGGACGATTTGTTAGCGGTCTGGGTAGAGCT
ACAAACTTAGTCGCAACCAACTATATTCAAAAGTTATTCCCAGAGGATGA
CCTGTTTTATAAAATGACCATTTTGTCGAACTTTGTTACAGTTGGGACCG
TTATTGGTCCTGTTTTAACGTACATTTTCATACAAATAGATTTCAATCTG
GGTGCATTGAACTTAAATTTTGGCAACTCACCTGGTTTTTACATGTGTTT
GTgtaaaatgtttttgttcgtTTGTCTTTTGCTATTCATGGATGATATCC
CGTTCCAATCGAGTCGAGAACGTTTTCAATATCAGCCAAAGAATCGTCTC
CAAGAGATCGTTTGCACATGCGCACCTGAAGAAGATGAGGATGAGAAACT
CATTCAAAAATTTGATGCTCAGGAAGAATTTCTAAAAGAACAAGATAATG
ACGACAGTGAGATTGAAatcaaaagtaaaaagaaagtaCCGTTGAAAAAA
GCTCTTTCAGAAACACTACGCCGAAAGAAAGTTTTGGCCGTTTTAATGAC
GTTATTTGTACACGGTATGACGTTCAAAATTATAAACTCGTTAATTCCAG
TGGAGAGttggaaatatttgaaatgggATATCAATAAGATAGCTGGTCTA
TGTCTCGGCAACACTGTTCTAGGAACGGTTGTGTCTGTTGTTATGGCGAT
GTGTTTCGCATCGTCTACTCATTTCTTGAATCTGATTGGTGGAATGTTCC
TAGGGTTATTCTCATTGGTGCTTCTTGGAACAATACAACATTACATCATC
AATATGGTAGCTGCAAATCTGTTATTTTGTTTGATGGCATTTTTCAACGT
TGCTGCGTCGTGTCTGATTGGCTTGTCCACTCGGATGATCCTAGAACATT
TAACAGACCAGAAATTGAAAAGCTTCACTAATCTTCTAAGAACATTTACA
TTGGAAGTTTCGTACTTTTTCGGGTCTTTACTTTTACCCCTTGTTGATAT
GGATGTCAATATGAGCatgtttgttggtttgtttgtCACGTTGGTTGCTA
TGGTATTTCTGACGCTAAAATTAAGAAATATTTGGGTTTAAATCATAAAT
CGGAGCTATCTTGATTGCTGTACCACATTTGATTTAGCTAATATCTAGTC
AAAATGAAAACCCTAATATGTGATACAGCAATCTCTCGTACCCATTCAAG
TCAAGACATACAGGTCATTTCATGAAACAATTAAAGgcattttgtgtttt
tttacgGTTCGAAAATCTTATAAGCTCTTATAATAGAAATGCAAAAGAAA
TTTACTCTCCTACCCAATTTCCTTGGCTTACCATTCAATCTACTAATCTG
TTGTTAACACGGTAACAGCCACATATTATCATCGGAATGTAATTTAGCAA
TTTTATTATCTAAGAATTATAAAGAAGATGTAAATACATATTTTATTTCA
gagtttatttcaaaaatacagATCACTGTAGTCATG Run BLAST on NCBI transcript from alignment at scaffold_139:60405..62640- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047904 ID=TCONS_00047904|Name=TCONS_00047904|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at scaffold_139:60405..62640- (Clytia hemisphaerica)
GTGTGGGGTAAAAGGTTATACTGTATATATTATGCTGCAAGAGCACAGAG
AGGTTACCGAGTTTAGACTTTCGAAGTCAACTCTTATGTTCTTTAAAAGA
AGCCCCAAGCAATTAGCATGAAAGTGTGCGTGAACCGGCGAATGCGTGAA
ATGGAAAACTTGTGTGAACAGAAATTGCGTGAATTACGAAAAGAATTACG
TGGATGCATGAATTTTGGAAAAAGAATTGCGTGATTGAGTGAATTGAAGG
TCCGCTTTTCATAAAACATTTTGGGTCCTTTTGGGAATTAAAAACATAAG
TAATATGTTTTGAAACAAAATCGAGCATAACAGAAAGTGGATTTCTATTT
TAGAACAAGCTGTTGCTAAAAAAAACAAAAAATGGAGGAAAATAACAACA
CGTAAGGATCATGGACTTTGTAGTTTCGAACACAGATAATCGTAAATCCA
TCATGTCTTGGTACAGAGCACGGAGAAGTATTTTCATTTTGTTGTGTTAT
GAATCTCTCCTGTTTGGAATCGAACTCACCATGCTTGAACCGACCGAATA
TTTCTACTTCAAAGACGTCTTACGTGTTAACTCGCCCATCTTATGTTATA
GTTTGTCGCTAGCTTTGAATGTCTGGTCCTCCCTCATGGCGTCCATATTT
GTTAGTCACGTGATCAAAAAGTATCACGTGTTTACATCCGCCATGTTGAT
TTTATGTTTGATTTCAACAGTCGGTCATTGTATGTATTTCGTTAGCAGAT
CTCCTGCAGTCATCATTATGGGACGATTTGTTAGCGGTCTGGGTAGAGCT
ACAAACTTAGTCGCAACCAACTATATTCAAAAGTTATTCCCAGAGGATGA
CCTGTTTTATAAAATGACCATTTTGTCGAACTTTGTTACAGTTGGGACCG
TTATTGGTCCTGTTTTAACGTACATTTTCATACAAATAGATTTCAATCTG
GGTGCATTGAACTTAAATTTTGGCAACTCACCTGGTTTTTACATGTGTTT
GTGTAAAATGTTTTTGTTCGTTTGTCTTTTGCTATTCATGGATGATATCC
CGTTCCAATCGAGTCGAGAACGTTTTCAATATCAGCCAAAGAATCGTCTC
CAAGAGATCGTTTGCACATGCGCACCTGAAGAAGATGAGGATGAGAAACT
CATTCAAAAATTTGATGCTCAGGAAGAATTTCTAAAAGAACAAGATAATG
ACGACAGTGAGATTGAAATCAAAAGTAAAAAGAAAGTACCGTTGAAAAAA
GCTCTTTCAGAAACACTACGCCGAAAGAAAGTTTTGGCCGTTTTAATGAC
GTTATTTGTACACGGTATGACGTTCAAAATTATAAACTCGTTAATTCCAG
TGGAGAGTTGGAAATATTTGAAATGGGATATCAATAAGATAGCTGGTCTA
TGTCTCGGCAACACTGTTCTAGGAACGGTTGTGTCTGTTGTTATGGCGAT
GTGTTTCGCATCGTCTACTCATTTCTTGAATCTGATTGGTGGAATGTTCC
TAGGGTTATTCTCATTGGTGCTTCTTGGAACAATACAACATTACATCATC
AATATGGTAGCTGCAAATCTGTTATTTTGTTTGATGGCATTTTTCAACGT
TGCTGCGTCGTGTCTGATTGGCTTGTCCACTCGGATGATCCTAGAACATT
TAACAGACCAGAAATTGAAAAGCTTCACTAATCTTCTAAGAACATTTACA
TTGGAAGTTTCGTACTTTTTCGGGTCTTTACTTTTACCCCTTGTTGATAT
GGATGTCAATATGAGCATGTTTGTTGGTTTGTTTGTCACGTTGGTTGCTA
TGGTATTTCTGACGCTAAAATTAAGAAATATTTGGGTTTAAATCATAAAT
CGGAGCTATCTTGATTGCTGTACCACATTTGATTTAGCTAATATCTAGTC
AAAATGAAAACCCTAATATGTGATACAGCAATCTCTCGTACCCATTCAAG
TCAAGACATACAGGTCATTTCATGAAACAATTAAAGGCATTTTGTGTTTT
TTTACGGTTCGAAAATCTTATAAGCTCTTATAATAGAAATGCAAAAGAAA
TTTACTCTCCTACCCAATTTCCTTGGCTTACCATTCAATCTACTAATCTG
TTGTTAACACGGTAACAGCCACATATTATCATCGGAATGTAATTTAGCAA
TTTTATTATCTAAGAATTATAAAGAAGATGTAAATACATATTTTATTTCA
GAGTTTATTTCAAAAATACAGATCACTGTAGTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047904-exon-scaffold_139-1575043694:60405..62640 | TCONS_00047904-exon-scaffold_139-1575043694:60405..62640 | Clytia hemisphaerica | exon |
| TCONS_00047904-exon-scaffold_139-1510915933:60405..62640 | TCONS_00047904-exon-scaffold_139-1510915933:60405..62640 | Clytia hemisphaerica | exon |
| TCONS_00047904-exon-scaffold_139-1491911889:60405..62640 | TCONS_00047904-exon-scaffold_139-1491911889:60405..62640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:60405..62640 - |
Blast
The following BLAST results are available for this feature:
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