TCONS_00047909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047909
Unique NameTCONS_00047909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047909 ID=TCONS_00047909|Name=TCONS_00047909|organism=Clytia hemisphaerica|type=transcript|length=1955bp
atctaaGATAAAAGTATAATAAAGATCAAAGCATATAACTATTGATCAAT
GGATGAACAAAGCTGTCCAAGATGCAAGTCAACCAGCTATCGGAACAATA
AACTGAAATTACTGGTCAATGTTTGTGGTCATAAACTatgttCAACGTGT
GTTGATGTGTTGTTTACACGTCCATCAGCTGCTTGTCCACAGTGTAATAC
TGCATTGAGAAGGAGCGATTTTCGAGTGCAACAATTTGAAGATGCATTAG
TTGAGAAAGAAGTCGATATCAGaagaaaaattgtcaaaatATTCAATAAA
AGAGAAGAGGATTTTAAAACTTTGCTTGATTACAACAACTATTTGGAGGA
TATTGAAGTGATAATTTTCAATTTAGCAAACAAGCAGAATGTGGATGAAA
CGAAGAAAAAAGTTGATGCTTACAAAAAGGATAATGAGAAGCTTATCCGC
AGGAATAACACAAAAATTAGTCAAGAGGAAGCGCTGATGAAAGCGTCAAT
CGAAGCAGACCTACAGAGCGCTGAAACTAAACGTAAAATGCTGGTGGAAG
AAGTCGAAAATGCCGCGTTGCAAAAGAAGAAGGAGAAAGAAAACCTCATC
AATGATTTGATCTATGCAAATGCACCAGCGGAAGAGGTCATTGCAAGGCA
TAAACTCATCAAAGAACAACATCAACAGCAAAAAatggaagaagaagaac
aaaagaaatctttcttcttttcagagAAAAACAAGAATTCACACTTTGTC
AATCAGCCAATTGTGGAAGCTCCTTTGTTTATATATCAAGAATCAACGAG
AGAATGGTTCGGTCCCAGCCCTCCCGAAGAAGACGCTCTCCAATCAAAAG
GGTACCTGCAACATATTCGGAGTGCATCGTCCTCCGAAAGAGCTGGTGGT
TACACGGAATCTATTGCTTGTCAACGTGCTATTCAAGAAGCATTCGACTG
TCTTTTCATCTAATAGCAAAGCAACTTTCTGTTCCTTATTGGCCTCAAAC
CAACATTTTCCAATGCGGTTATCTTAACACTTCAAACAGCCGCATCGAAC
ATAAAACAACGGCGAGGTCAACTGAGATGTCTCATCTGCACTACTGATTC
GCTTCTCCAGCTCCCTTTGCTTGTTCTGCAAACTATTTTGTAGTCCACCA
GTATCGGAAGACTATCCAATAGCTCAATATGGATCAAGTACTACCAGGAT
ATGCTGAAgAATGCAGATTAATGTCCAACACATCACTGGCACCTTCAACT
CCATTCGTTTGTTATTCACTTGATGAAATTTCACCGACTTACGATTTTAA
CACTCCCGACaccaatgcaatgtcttccaatACTGTAGGCCAATCAAATC
ACGTGATTTTTCCTGGTGAACAAGACAATATGTCCATTTATTTCAACAGA
AGGAAAGGAGTGGGGAGTATTGATGATGGAGAGAGGCGAAAACTTCGAAG
GGAGCGAAACAAGGTGGCTGCATCCAAATGCCGAAACAAAAGACGCGAGC
ATGTTCGACTTTTACTAGAGCAATCTGACGAATTGGAGCTGAAGAATAAA
CGAGTTGAGCTTGAAATTGTTCATTTACAAGCACAAATCAAAGAACTTGA
AACACTTTTAGATACCCATCGTTGTTTTTCTGGTGTTAACAATGGTAATA
TTGTTATGAAAAATGGATTGTTCGGTCAACCTCATTTGTAACATAACAAG
CTTCTTGTTTGTGACTTGTTATTCGACTAAAAATGAAATGTTATTTTGAC
AATaaacttttgtaaatatttgaCTGAAACTATTTTTGTGGTCCTATAag
cttttgtatatttttttagctgaatattttttgagcCATTATTATGTATT
TTTGAATTGACTTTTGTATGTTTTTAATGACAATGACACAAAAACATGTG
TAAAACTATTTTGTACAAGAGGTACTTCCTGTGAAAGCTTCGTTTTGAAT
TAATT
Run BLAST on NCBI

transcript from alignment at scaffold_139:161616..178210-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047909 ID=TCONS_00047909|Name=TCONS_00047909|organism=Clytia hemisphaerica|type=transcript|length=16595bp|location=Sequence derived from alignment at scaffold_139:161616..178210- (Clytia hemisphaerica)
ATCTAAGATAAAAGTATAATAAAGATCAAAGCATATAACTATTGATCAAT GGATGAACAAAGCTGTCCAAGATGCAAGTCAACCAGCTATCGGAACAATA AACTGAAATTACTGGTCAATGTTTGTGGTCATAAACTGTAAGTTTTTAAA GTATTTTGTTATAGGCTTAAATCAAGGTGGAAATTATTTTTACATTTTCT GCAATGAAGAAAATCCATCATATTTATCAGAAAAATCCAGATACACAAGA TTGTGGGTTCAAATTAAAAGCCAATATTTTCCAGAAGGCAAGAGTAAGAG AATCAATCCAGGATCTGTCAATTATTTTAATGGTAGCTTTCTGGAAGCTA TTTATTGTGTGCTAGCAATCCTTACCAATTCAAGTTTAAGTTAGAAATAT CCAAGCATACATCTTATAAAAGTTTCAATAAATTTGTATTTTTGTAGATG TTCAACGTGTGTTGATGTGTTGTTTACACGTCCATCAGCTGCTTGTCCAC AGTGTAATACTGCATTGAGAAGGAGCGATTTTCGAGTGCAACAATTTGAA GATGCATTAGTTGAGAAAGAAGTCGATATCAGAAGAAAAATTGTCAAAAT GTAAGATTATTTTTACAATAGCTACTACATACCCCCTACCCCCTGAGCAG TTTGCGTGAATGCTTGAAAATTAGAAAAAGATAGCATGAATGTGTGAGTT TGGAAAAAAAATTGCATGATTACGTGAATTTAAGGTCTGTAACCTCTGTA CTTTTACATGGTGTACGTTAATACTAGATGAATTTTCTATGAATCCCTAA GAGTGGATTTTCACCTTTATTTTTGCTGTATATTTTAGATTCAATAAAAG AGAAGAGGATTTTAAAACTTTGCTTGATTACAACAACTATTTGGAGGATA TTGAAGTGATAAGTGAGTATCCAAACCATCAAAATGGTCTCATCAATATT CTAATTTAATAATGACGAGGGCTACATACATAATCCAGTTTAGAGTGGCT GAATTTTCATTTTCCATTTTATTCTTACTATTCTTTCTGCTATTTCTTAC ACAAAAATCAAACCTTTTCTTATAGAAAATAAAAAAAGTCCACCTCGACT ACAACAAGTGTCTATCATCATCTTTGATTGTCTTTCAGTTTTCAATTTAG CAAACAAGCAGAATGTGGATGAAACGAAGAAAAAAGTTGATGCTTACAAA AAGGATAATGAGAAGCTTATCCGCAGGAATAACACAAAAATTGTATGTTA TAAATTTTAATCAATTCTATTCCCATCAATTCCGCAGAATCCTTTTGAGC CATCCCCTTAAAAAGCAAATGAAAAACTAATGGGTATCCAAATGTATTAT TTCCAGAAGAGGGCTTTTGTAAAAAATATTTAGCTCCTAAGTGTTAAAAT AGTTTCTGGAAATATTAAAACGCCAGGCTTGAACTCTTTAAGTTAATGGT ATGTACAAAATTCTGGTCCTGGGGTCTGAAATTTTTGTTCTTTGCAACAG GTAAAATCAGACCTCTGTTGGAAACAATTCATGCCAATTGTGGTGACTTT CCAGTATGGTTTGTGTATTCTTATCCTTTTAATTCTTTCAGAGTCAAGAG GAAGCGCTGATGAAAGCGTCAATCGAAGCAGACCTACAGAGCGCTGAAAC TAAACGTAAAATGCTGGTGGAAGAAGTCGAAAATGCCGCGTTGCAAAAGA AGAAGGAGAAAGAAAACCTCATCAATGATTTGGTTTGTCAATTCATAGCC CTTCTTCGTGATTCTCTAAGCTAGACTTTCAGTGTTTTAAAGCAGTCAGA TTTTCAACGCTTCATTTCTTAAAATTCTCCCTTTAGCTAAATATTATGGC CTCGTTTTCAAAAAGAACAAGAACTCTAACCGACGTTTACTCACTTTGAT GTGTTTTCCCAAAACTTTTTTAGTACAGACGTTTGCAAGAATTAACGATA GCTCAAAAAAGAACTTGCTCAAGTGGGATTATATTATTGGTTTTCTACTT CATTAATGTGCCGATTGCTGGTTCACCGACATGTTTTTATTCTTATTCTC TCTTAACATTCTTCGACTTTTGTTTAGATCTATGCAAATGCACCAGCGGA AGAGGTCATTGCAAGGCATAAACTCATCAAAGAACAACATCAACAGCAAA AAATGGAAGAAGAAGAACAAAAGAAATCTTTCTTCTTTTCAGAGAAAAAC AAGGTAAAATATTTGTCAAGATGTACGGTTGATGGAAGGGGGACCTTAAA GTTATAAAGAAAATGATATCTCTAATAAAATTTAATAATAAAATTTAAAA TTTTTCTTACGTTAAAGAATGTTCTGTCGACTTCTGACGACAGACGAGGA TTAGACAATGTATTATTATAAAATTTCAATATTAATTTCCACAGGTCTAT ACCTGTTGAATATAATTATATAAATATTTGTTTAAGATGGTATTGCTGAC CCTTATTTTGTTCTTTCTTTAGAATTCACACTTTGTCAATCAGCCAATTG TGGAAGCTCCTTTGTTTATATATCAAGAATCAACGAGAGAATGGTTCGGT CCCAGCCCTCCCGAAGAAGACGCTCTCCAATCAAAAGGGTAGGCATAGAT TTAAATAAATAGATTCAAAACATATGTGTCTGATTCCTTTCATGTCCTTT AAAACGAGTTGTTACTAATAGTTTTTCGGGAAATTTTAGAGAGAAAGTCG CCATTCAACTACTTTGACTCGAATCCCTTTCCTTCTTTTTTTCATTGTTA TTTTTGCATTTAAGGTACCTGCAACATATTCGGAGTGCATCGTCCTCCGA AAGAGCTGGTGGTTACACGGAATCTATTGCTTGTCAACGTGCTATTCAAG AAGCATTCGACTGTCTTTTCATCTAATAGCAAAGCAACTTTCTGTTCCTT ATTGGCCTGTTAGGAAACTAAAATGAACTTTCAGTTGTCTCAATGTTTGT AAATATGTAAATAGAAGACGTTTTTTGCTAAAAATTTTTACAAACCGCTT GTTTTGTTTATCTTTTGTTTCCGTTCGAATTATTTTTCTTTTTTTTGTTT GTAAACAAGTTTCAGGGGTTTCCTTTTTGTTTATGACTCACTTAAGCATT TTTCTTAATCAACTATGTTTCGAATGTGTTCTATATACAGTCAGAAATGT TCTAAACTATCCTATTAATCCGAAAACTTGATTTTGATTGTCAAAGAAAT CATATTTTCTTTATGTTTATCCTATCCCAATGCAGAGTTTAAATATCAGT TAATTATTCGGTGCTACACTTTATACCTATATTTTCCAACTGTTATTTTC TTTCAGATCCCTAATTCTAAACAATTGAGAAAATATAAACAAATCTTTGG TTAGAATGTTTCGTGCATCGTTCAAACGTTGTTAATTACGTTTGCATGGC TCGTTAAACGTTCATTTGCATGCTTCATTTATCAATATGTTGGTTAATGT GTTCGTTCAAGGTTTATTAAACGTTCCTAATACTAAACCTTGTACTAATT TATTAGTTCTCTCATGCGAGTGATTTTCTTCTAACCAGTTGAAACAAGAT GTTTGAAATTCTGTTGGGTTTTCATCAAACAGCAAACCAACATTTTCCAA TGCGGTTATCTTAACACTTCAAACAGCCGCATCGAACATAAAACAACGGC GAGGTCAACTGAGATGTCTCATCTGCACTACTGATTCGCTTCTCCAGCTC CCTTTGCTTGTTCTGCAAACTATTTTGTAGTCCACCAGTATCGGAAGACT ATCCAATAGCTCAATATGGATCAAGTACTACCAGGATATGCTGAAGTAAG TAGTATTGTGCTTATAATCTTATTATAACACGTATTTTAGAGGTTGGTTA GGGAAATAGAGCTCTATATCTAGGCATTGCTTTTTTCTCATCTTCCCTCA ATACATAACATAGTAAATTATAATGCTCCACACTTCATAATTCTTGAAAA CAAAAATTCTCTATTGTTGAATGGAACAATCAACTAACGAAACGTGCGCG CGTTTCCATAATTCGTTTTGACTTACTACTTATGTTTCTGCAAGCTCGGC ATTTTTTTCTTAGCGATACAGACACTGATAAACTGTCAGTATGGTTATTA TGTATTTTATTAATTTGACGCTCTCTAATCCAATTTTCAAGTGGAATTAT TGTGTTTCCATCGACTTTCAATATCATCGAGTATCAAATAGTAGAGCGTC GAATTATAGTGCGTTAATTGTATAAACATTTTCTTTTTAGGAATGCAGAT TAATGTCCAACACATCACTGGCACCTTCAACTCCATTCGTTTGTTATTCA CTTGATGAAATTTCACCGACTTACGATTTTAACACTCCCGACACCAATGC AATGTCTTCCAATACTGTAGGCCAATCAAATCACGTGATTTTTCCTGGTG AACAAGACAATATGTCCATTTATTTCAACAGAAGGAAAGGAGTGGTAAGG ATAAAGCGATTGTAAAAGGTTAAGAGTCTGCTACAGATATAAGACAACTT TCTTATGACTTCGGCTTTTTATAAAAGATTTCAGTATGTGTATGATATGG GAAAATAAGTTTTTTTTAATGACAATCGCGATGATGTATTGTATATTGAG AGGAGCATACAGAAACATCACCGATTTTTGTCGTTTTTTTATCAAGCTCT TCTTTGTATGATTGTAATTTGCATTGACCTCCATCATAGGGGAGTATTGA TGATGGAGAGAGGCGAAAACTTCGAAGGGAGCGAAACAAGGTGGCTGCAT CCAAATGCCGAAACAAAAGACGCGAGCATGTTCGACTTTTACTAGAGGTG ATATTTCATTCTTTTTCAACTTTCTTCGCATGTCGATTTTGTAATATTTG TGTCTTTCACGGAATTTCAGTAATATGTTATTTGTGCTAGCCTGGATATC CATGCTGTAAATTATTTTCTCATTTCGCTATTCCTGCAATACATGAATTG ATAAATTACGCATGCACTGCCTTCTGATATTGGAATGCAAATAACTAGGA AGACCAGGCAATAAACCAGAAGCATCAAAAGTTAAAAAAAAAGTTTACAG CCTAAATATCCAGGCTTTTTGTACGTATGTTTTATTGTTTATCTTTCCTT TCTTTTTTCCACGGTATGTTCTTGTTGCTTGTGTGTAATTGTTGCATTGT TTGTTGTTTGTGCTAGTAATGCTTTCCTGGTCTTGTACTTATTTTGACTA TTATGTTGTACAGTAGTTTTGTAGTCGTTCTGTTGTATTTTCTCCCGCCA TTGAATGAAATGAATGAGTCCTTTTATGTAAAAGAATAAAAGGCTTTTTT AACCAATTTTCCTACCCCATCTACTTTTACTTCACCCCCTGGAATTTCAA AAACAATTTCCCCACCATTTTTCAATTTTCTTGAAAGAAAATCCTACCTT TTTTAAAGTAGGGTGGGGGGGGCACTACGAGCAACTTATGCTATCTCGGC GTTTTGGACTAATTCAAGTCTGGAAATCATCTTTTGTAAGTAATGAACTT CTGTATGACAAGTTAACTTTCTTCGTTCGTTCATTTGTTTCCTTTCTCCC TTTCTCTTGTGGTGTCCCTTATATTCTTTATGTTCAAATGATTCGTTTAA TATTCGCAAAGGTAAAGTTTTGATGTGAGTTCGGTCTCTGGAACAGTTTG TAATTTGTCTATTTTATCGTCGTTGTTGTTTATGATGTTGTTTGTGTTAA CCTTTACTAATTCCAACTTTAACGGAAATTCTAATTTCAGAATCCAGGAT TTTATCTTATCTTTATTATTGTAAAGGGAATTTAGAGTTGTTTGAAAGAT CAGTTGGCGAAGGTTAAATAAAAAGGTTCCACTAAATATTTGTTCAGAAA AATTCGTTGAGTAGAACCGTTTTTCAATTCTGATTCACACTCCTTTAAAA ACAAACTATTTCAGGAATGCACCAAGCATGATGTCAACAATTATCTGTTT TAATGTACCGGGTGCGCCACAAAGAAGTTTCTCTCTTTAAAGGGAATTTT CTCGAAGTCTGAAAATTTGAAGATAACCAATCTTTTTTCATTAGAAAGAA GAAAAATAAACTTAAATTCTGATGGGTCATTTATAGAATTTGGTTCATTA GATCAAAAGTTATGCTCAATTGAATAAAAAAGTTACTTTCAGAAAGTGCT CGAAAACGTTAAAAATCGACCTATTAAATTTTTAGTTTAGATTTGGCAAT CGCAATAGCCTTTACATGATTAAGAGCATTTTTGAGTAACTTACACATGA ATTTTGAAATTGAAGGTTCGAAAGGGTTTTAAATCTTCATCAAAATCAAT TTAATTTATTTTTAACGAAATTTTCCTCAGATTTTTGGTTCTAGACTGGA TAAAGTCTATGTAAGGCCGGATCTACCTCGAAACCCATATTTGATGTATT TTTATGAATTTCATCAGATTTTTTGGCCTTTTTCGACGAATTTTCTTCTT TTTATTGAAATTCAACCTTCCTTTATATAACAAAAGGTCATTTAGAGAGC TAATTATCATTTTTAGTGACTGAAAGGAAAATACTGATGTATAATGTAAT TGTGCTTCTGTTTATTTTGATAAGTCGATTTTTAACGTTTTTGAGCACTT TCCGAAAGTAACTTTTTTATTCAATTGAGCATAACTTTTGATCTAATGAA TCGAATTTAATAAATGACCCATCAATATTTAAGTTTATCTTTCTTCTTTC CAATAAAATAGGAATGGTTCTTTTAATGTTTTTAGATTTTGAGAAAATCA GTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTATATATTATTGTT ATGTGTTTTTTACAAGTACAGCATTTTATTCGAAATCACATTTTCATTTA GATCGATTAATGTAATTTCTATAAGATTCATTGTTATTTATATTTATTTA TCAATATCATCCCATCAAAATCAATTCACTTTCATTAAAATCGTTACATT TACATCAAAATCATGTCATTTCCATCAAAATCGTCACATTTTTATAATCT CGAATCATTTTCATTTTCATCTGAATCATCAACTTGAAATTAATAAAACA TAGCATATTTCAACGTAACAGTTAAATCATAACCAATTAATTTCCATCAA AACCATGTCACCTTTATCTCAAATCATTGTCGTTTTCTATCAAAACCATG CCATTTTCGTCAAAACCATGCCATTTTCATCAAAACCATTTCATTTTCGT CAAAGCCATGTCATTTCCATCAATACTATGTAACTTTCATCAACATCGGG CTATGTTCATCAAAACCATTTCATTTTCATCGAAATCAAGTCACTGCCAT CAAAACCATGTCACTTTTATTCAAATCATTGTCGTTTTCTATCAAAACCA TGTCATTTTCGTCAAAACCATTTCATTATAAGCAAAACCATGCAATCTTC ACCAAAATCATGTCATTTCATTCAAAATCATGTCATTCCATCAAAACCAT GTCATTTCCATCAAAACTATGTCATTTTCATCAGAACCATGTCATTTTCA TCAAAACCATGCCATTTCCATCAAAACCATGTCATTTTCATCAAAACCAT GCCATTTCCATCATAACCATGTCATTTTCATCATAATCATGTCATTTCCA TCAATATCCTGTCATTTCCATCAAAACCATGTCATTTCCATAAAATCATG TCATTTCTATCAAAACCATGTCATTTCCATCAAAACCATGTCATTTCCAT CAAAATCAAGTCATTTCCATCGCANTCATTTCTATCAAAACCATGTCATT TCCATCAAAACCATGTCATTTCCATCAAAACCATGTCATTTCCATCAGAA CCATGTCATTTTCATCATAGCCATGTCATTTCCATTATAGCCATGTCATT TCCATCAAAACCACGACATTATCATCAAAACCATTTCCTTTTCATCAATA TTATGCCATTTCCATCTAAATCATGTCATTTCCATCATAACCATGTCATT TTCATCATAATCATGTCATTTCCATCAAAATCCATTTCATTTCCATCATA ACCATGTCATTTTCATCATAATCATGTCATTTCCATCAAAATCCTGTCAT TTCCATCAAAATCCTGTCATTTCCATCAAAACCATGTCATTTCCATAAAA TCATGTCATTTCTATCAAAACCATGTCATTTCCATCAAAACCATGTCATT TCCATCGAAATCAAGTCATTTCCATCGCAAAATCATTTCATTTCCATCAG AACCATGTCATTTGCATCAAGACCATGTCATTTCCATCAAAACCATGTCA TTTCCATCAGAACCAAGTCATTTTCATCATAGCCATGTCATTTCCATTAT AGCCATGTCATTTCCATCAAAACTACGACATTATCATCAAAACCATTTCC TTTTCATTAATATTATGCCATTTCCATCTAAACCATGTCATTTCCATCAA AACCATGTCTTTTCATCAATATTATGCCATTTCCATCTAAACCATGTCAT TTCCATCATAACCATGTCATTTCCATCTAAATCATGACATTTCCATCATA ACCATGTCATTTTCATCAAAACCATGTCATGTCCATAAAACCATGTCATT TCCATCAAAATCATGTAATTTTCGTCAACATCGTGTCATTTTTATCAACA TCATGTCTTTTTCATTAAAACCATACCATTTTCATCAAAACCATGCAATG TTCACCAAAATCATGTCCTTTTAATCAGAATATTGTCAATCCATGAAAAA CATGTTATTCCATCAAAACCACGACATTAGCCCTTTCCGTGCCGATGTCG TATATATCCGACATGCAAATTTTCACCTTACTTGCCAATGTCGGATATAT CCGACATCAAATTTTTTTACCTAATTGCCGAGGCCTTTAAAAAAGAGGGA GCTCTATTGCCGAGAAATCAGCTTTTAGGAAAATGGTTTTCTTATTTTGC CAATGTCTTATATACCTTATGGGAAGAAATTTTCGCGAGAAGAAATTTTG TTTTTTATTCAAAATTACCTAAATGTAAACAAACTGTTAACCCTTCCATG GACGAAAATTTCATAAATCACCAAAAAAAGAAATTCCGACCGACCGACGC ACCTCCAATATCTAGGGTCGAGTGACAGAAAACCAACAATTTTTTAAGCC CAGGCTATCATCAAACCATTTTCTTTTCATCAATACCATGTCATTTCCAT CTAAATCATGTCATTTCCATCATAACCATGTCATTTTCATCAAAACCATG TCATATCCATAAAAACACTGTCATTTCCATCAAAATCATGTCATTTTTGT CAAAAGCATGTAATTTTTATCAAAATCATGTAATTTTCGTCAACATCGTG TCATTTTTATCAACATCACGTCTTTTTCATTAAAGCCATACCATTTTCAT CAAAACCATGCAATTTTCACCAAAATCATGTCCTTTTAATCAGAATATTG TCAATCCATGAAAAACACGTTATTCCATCAAAACCACGACATTAGGCTGG ACTTGAAAAATTATTGGTTTGCCGTCACCCGACGAACCCTACCTCGAAAT CTGCCGACCCAAAAGAATTTATTGCCATTTTACAGAAGATTTTTTTCCTT CAAAAACTTCAAACAATAAAAAATCAAAACTCGTATCTTGTTTGTCTCAA GCATAAGAATCGTAAATTCCCTGTTAGCACTTCTGTTTTTTATTCAAAAT TACCTAAATGTAAACAAACTGTTAGCCCTTCCATGGACGAAAATTTCATA AATCACCAAAAAAAGGAAATTCCGACCGACCCACCTCCAAAATCTAGGGT CGGGTGACGGCAAACCAACAATTTTTTAAGCCCAGGCTATCATCAAACCA TTTTCTTTTCATCAATACCATGTCATTTCTATCAAACCATGTCATTGCCG TCAACATCATGTCATTTCATCAAAACTATTGTCATTTTTTATCAAAACCA TGTAATTTTCGTCAAAACCATGCCAGTTTCGGAAAAATCATGCAATTTTC ATCAACATCATGTCACTTCCATCAAAACAATGTCATTTTCACCAAAACCA TGTCATTTCTATCAAAACCATATGATTTCTATCAAGTCAATATCATTTGC ATAAAATCCATATCATTTCTATCAAAACCATGCCATTTTCATCAAAACCA TTTCATTTTCGTCAAAACCATGTCAGCTTCACAAAAACCATTTAATTTTC ACCAAAATCATTTCCTTACCATCAAAATCATGTCATTGCGCAGAATCGAT GTTTCGTGTTTTTTATCTCAAAAATGAAGTCGTTGCATTGTTTTTCGCGC GCATTCTATTTTCTGCCAATCAAATTGCGTCACGCATTTTTTGCAATCAA AACATTTATTTTATTTGTGAGTTTGATTTTGAAAAGAAAACATGAATTCT TAAAAAATTAAACCTGAAATATTTTGGTTTTAAAAAATCTTTGAGAAACA GTTATTAAAATTATTAAATCAATTTTATCGAGATATGGTTGTAAGAGGTA TGCATGTACTCTTAGGTGCCAAATAAACGGCCCCCCGCTTGTTAATTTTT CGATTTTTTTCCAACCCCCCCGGACCTTATTAGGACCCCCTCGTTTATTA ATTTTTGAAAAAATTCCCAGCTACAAAAAGGAAAATTCCTTGTTTTACTC TAAAAAGCCTAAATTTAGTCTATTCTGACCCTTTTTAGGGGTTTTAAAGG TCCATTATCCACCCCCCACCCCGGTAATTAGGTCCCCCCCGTTTATTTAA TTTGAAAATTTTTTCCAACCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTATATGTATAGAAATGGAATGCTTTGTTTGC TTTAGTTTTCACTACAGACTTTCCTCCCTTCAAAATTCAGCTTTTGAAAG GAGCTTTTATTCATCCAAACTTTGTTTTCTTTATTAATGGTGATTCATTT TTAAACATAAAAAACTCCACAGGATAACCAGTAAGTATTATTTACTTTGG AGGTAAAAAATGCTAAAGAAAATGAGTAGACATTGAAACTTGATGTTAAA ATTGACGTTACAGTATTTGAATATGCTTCAAGATATAATATAACTTCAAG GCAAAAAAATCCTATGAAATTGTTTTCATATATTATTTTGTAACATTTTT TATCCTCTTACACTTCAGATGGATAGGAAAATTGTCCAGACCTACTTGAA TTTCAGTTATCATTTTTGTCATTAACGTCAGAATGTATCAGCCTTTATTT TTCTTCGTCAGAGGGGTAGTGCCTGTCTTTAGGACAAGATGGTCTAAAGA ATTTGTCTTAATCAAAACATATATTTATACACCGCTGGAAAGAAAAAGGG CTAAACTTTTTTACTAGATAGTTGGGAAATTGAAAGCTTTTCAATTTATA TATTCCCTGTTCTCTCAAAGTTTGTTGATTTTTTAAAAACATTAAAAAAA GGTAACCTTTTACAAACTTACACAACTAAGCAAGTTTGGTATATCTGGAA AAAGGAAAGACTCAGTGATTCAAAAATATCAAATTTATCTTTTTAAAGTC ATAAACAGTAAGCAGTCAAAATTTACGTCAAAACCCACGGATTTATTGCA TGTCAAAAATTGTAACGTCAATTCTGTGTGACAAAACCATGTCAATTTCA TCAACAAAATGTAATTTCCATCAACATCATGCCATTTTCATTAAAACCAT GACATTTTCATCAAAACCATGTTATTTTCATCAAAAGCATCTCATTTTCA TCAAAATCATGTTATTTCTATCAAAATCATGTCATTTCTATCAAACCATG TCATTTCTATCAAGACCATGCCATTTTCGTCAAAATCATGTCATTTTCAT CAAAATCATGTCGTTTCCATCAAAACCATGTCATTTCCATTAATACTATA TGTAACTTTCATCAACATCAGGTCATTTTCTTCAACATCAGGTAATTTTT ATGAAAACCATGTCATTTAATTCAAAGCCATGTCATTTTCATCAACATCA TGTCATTTCCATCAAAACCATGTCATTTCTATCAAAATCATGTCATTTCT ATCAAAACCATGCCATTTTCGTCAAAATCATGTCATTTCCATCATAACCA TGTCATTTCTATCATAATCATGTCGTTTTCATCAAAACCATGTCATTTCT ATCAAAATCATGTCATTTTCGTCAACATTGTGTCATTTTTATCAACATCA TGTCTTTTTCATTAAAACCATACCATTTTCATCAAAACCATGTCATTTCC ATCAAAAGCATCTTATTTCCATAGAAATCAACTCATTTCCATCAAAATCA TATAATTTTTACCAAAACTATGTTATTTTCATCAAAGCCATCTCATTTTC ATCAAAACCATGTCATTTCCATCAAAACCATGTCATTTTCATCAAAACCA TTTCCTTTTAATCAACATCATGCCATTTCCATCATAACCATGTCATTTCC ATCATAACCATGTCATTTCCATCAAAAGCATCTTATTTCCATCAAAATCA ACTCATTTCCATCAAAATCATATAATTTTTACCAAAACTATGTTATTTTC ATCAAAGCCATCTCATTTTCATCAAAACCATGTCATTTCCATCAAAACCA TGTCATTTCCATCAAAATCATATAATTTTTACCAAAACTATGTTATTTTC ATCAAAGCCATCTCATTTTCATCAAAACCATGTCATTTCCATCAAAACCA TGTCATTTTCATCAAAACCATGTCATTTTCATCAAAACCATACCATTTCC ATCAAAACCATGTCATTTCCATCAAAACCATGTCATTTCCATCAAAATCA TGTCATTTTCATCAAAACCATGTCATTTTCATCAAAACCATGTCATTTTC ATCAAAACAATTTCATTATCAACAAAACCATGTCATTTCCATCAAAATCA TGTCATTTTCATCAAAACCATGTCATTTTCATCAAAACCATGTCATTTTC ATCAAAACAATTTCATTATCAACAAAACCATGTCATTTGCATCAAAACCA TTTCATTGTCAGCAAAGCCATGTCATTTTCATTCAAACCATGCCACTTTC ATCTAAATTATGTTATTTTCATTTAAACCATGTAATTTTCATCAAAACTG TATCATTTCTATCAAAACCATGCCATTTTCACCAAAATCATGTCATTACC ATCAGAATCATGTCATTTCTATGAAAACCATATCATTTTCATCATCAAAA CCATATTCATTATCATCAAAACCATGCCATTTTCATCAAAACCATGTTAT TTCCATCAAAGGCATCTCATTTCCATCAAAATCAACTCATTTCCATCAAA ATCATATAATTTTTACCAAAACCATGTTATTTTCATCAAAGCCATCTCAT TTTCATCAAAACAATCTCATTTCCATCAAAACCATGTCACTTCTATCAAA ACTATATTATTTTCATTTCTATCAAAACCATGTCATTTTCATTAAAACCA TTTCATTATCAGCAAAACCATGTCATTTTCATTCAAACCATGTCATTTTC ATCTATAACATATAATTTTCATCAAAACTATATCATTTCTATCAAAACCA TGCCTTTTTCATCTAAATTATGCAATTTTCAACTAAACCATGTCATTTTC ATCACAACCATGCAATTTTCATCTAAACCATCTCATTTCCATCAAAACCA TCTCATTTCCATCAGAACCATCTCATTCCCATCAAAAGCATGTCAATTCC ATCAAAACCATCTCATTTTCATCAAAACCATGTCATTTTCACCAAAACCA TGCCATTTTCATCAAAATCATGCCATTTCCATCAGAATCATGTCATTTCT ATGAAAACCATGTCATTTTTATCAAAACCATTTCATTATCAGCAAAACCA TGTCATTTTCAATCAAAACCATTTCATTTTCATCTAAACCATCTCATTTC TATCAAAACCATGTCATTCGCATCAAAACCATGTCATTTTCATCAAAACC ATGCCATTTTCACCAAAACCATGCCATTTTCATCAAAATTATATCATTGT CATCAAAATCATATCATTTTCATCAAAACCATATCATTTTCATCATCAAA ACCATATTCATTATCAGCAAAACCATGTCATTTTCATTCAAACCATGCCA TTTTCATCTATAACATATAATTTTCATCAAAACTATATCATTTCTATCAA AACCATGCCTTTTTCATCTAAATTATGCAATTTTCAACTAAACCATGTCA TTCTCATCACAACCATGCAATTTTCATCTAAACCATCTCATTTCCATCAA AACCATCTCATTTCCATCAAAACCATCTCATTCCCATCAAAAGCATGTCA ATTTCATCAAAACCATCTCATTTTCATTAAATCCATGTCATTTTAATCAA TACCGTGCATTTTTCATCAAAATCATGTCATTTCTATGAAAACCATGTCA TTTTTATCAAAACCATTTCATTATCAGCAAAACCATGTCATTTTCAATCA AAACCATTTCATTTTCATCTAAACCATCTCATTTCTATCAAAACCATGTC ATTCGCATCAAAACCATGTCATTTTCATCAAAACCATGCCATTTTCACCA AAACCATGCCATTTTCATCAAAATTATATCATTGTCATCAAAATCATATC ATTTTCATCAAAACCATATCATTTTCATCATCAAAACCATATTCATTATC AGCAAAACCATGTCATTTTCATTCAAACCATGCCATTTTCATCTATAACA TATAATTTTCATCAAAACTATATCATTTCTATCAAAACCATGCCTTTTTC ATCTAAATTATGCAATTTTCAACTAAACCATGTCATTCTCATCACAACCA TGCAATTTTCATCTAAACCATCTCATTTCCATCAAAACCATCTCATTTCC ATCAAAACCATCTCATTCCCATCAAAAGCATGTCAATTTCATCAAAACCA TCTCATTTTCATTAAATCCATGTCATTTTAATCAATACCGTGCATTTTTC ATCAAAATCATGTCATTTCTATGAAAACCATGTCATTTTTATCAAAACCA TTTCATTATCAGCAAAACCATGTCATTTTCAATCAAAACCATTTCATTTT CATCTAAACCATCTCATTTCTATCAAAACCATGTCATTCGCATCAAAACC ATGTCATTTTCATCAAAACCATGCCATTTTCACCAAAACCATGCCATTTT CATCAAAATTATATCATTGTCATCAAAATCATATCATTTTCATCAAAATC ATATCATTTTCATCAAAATCATATCATTTTCATCAAAATCATGTCATTTT CATCAAAATCATTTTACGTAAGAAATCTGTAAATTATTTTCAAATATAAT CCAAGTTTTCAGTTCTTTAGGTTTGAATGCCTCATTTGATGAAAATGGTA AATATATATTTTATTCTTCTCCAAATCTCAAATTATTCTTAGAGCTATTC CATGCCGATCTATTGTGTTCAAAGGCTTTTAAAATATATTCTATTTCACC ACAATATTGCAAATCTTAACACACACAAATACGTACGAAGAATATAGCGC CTGCTTTTACACATTCTTTACTGGGGCATATGAGCATACACACATGTTTA GTTGGTATATTGTCAATATGAGATGAAACATGAGTGATTATGACTCTGAA AGAAAAACGAAGTGCATAATTTTAGACACGTAGTGGGCGAAAGTAAGTCG GGCTGGGACGTACTTCAGGTTGTCTTTTACTTCTGTCATCTCTATTTGTT ATTATTTCAGCAATCTGACGAATTGGAGCTGAAGAATAAACGAGTTGAGC TTGAAATTGTTCATTTACAAGCACAAATCAAAGAACTTGAAACACTTTTA GATACCCATCGTTGTTTTTCTGGTGTTAACAATGGTAATATTGTTATGAA AAATGGATTGTTCGGTCAACCTCATTTGTAACATAACAAGCTTCTTGTTT GTGACTTGTTATTCGACTAAAAATGAAATGTTATTTTGACAATAAACTTT TGTAAATATTTGACTGAAACTATTTTTGTGGTCCTATAAGCTTTTGTATA TTTTTTTAGCTGAATATTTTTTGAGCCATTATTATGTATTTTTGAATTGA CTTTTGTATGTTTTTAATGACAATGACACAAAAACATGTGTAAAACTATT TTGTACAAGAGGTACTTCCTGTGAAAGCTTCGTTTTGAATTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030485XLOC_030485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047909-exon-scaffold_139-1575043694:178074..178210TCONS_00047909-exon-scaffold_139-1575043694:178074..178210Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:177611..177763TCONS_00047909-exon-scaffold_139-1575043694:177611..177763Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:177299..177372TCONS_00047909-exon-scaffold_139-1575043694:177299..177372Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:176969..177072TCONS_00047909-exon-scaffold_139-1575043694:176969..177072Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:176479..176619TCONS_00047909-exon-scaffold_139-1575043694:176479..176619Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:176008..176133TCONS_00047909-exon-scaffold_139-1575043694:176008..176133Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:175623..175738TCONS_00047909-exon-scaffold_139-1575043694:175623..175738Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:175303..175446TCONS_00047909-exon-scaffold_139-1575043694:175303..175446Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:174416..174628TCONS_00047909-exon-scaffold_139-1575043694:174416..174628Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:173767..173970TCONS_00047909-exon-scaffold_139-1575043694:173767..173970Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:173414..173521TCONS_00047909-exon-scaffold_139-1575043694:173414..173521Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1575043694:161616..162050TCONS_00047909-exon-scaffold_139-1575043694:161616..162050Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:178074..178210TCONS_00047909-exon-scaffold_139-1510915933:178074..178210Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:177611..177763TCONS_00047909-exon-scaffold_139-1510915933:177611..177763Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:177299..177372TCONS_00047909-exon-scaffold_139-1510915933:177299..177372Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:176969..177072TCONS_00047909-exon-scaffold_139-1510915933:176969..177072Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:176479..176619TCONS_00047909-exon-scaffold_139-1510915933:176479..176619Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:176008..176133TCONS_00047909-exon-scaffold_139-1510915933:176008..176133Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:175623..175738TCONS_00047909-exon-scaffold_139-1510915933:175623..175738Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:175303..175446TCONS_00047909-exon-scaffold_139-1510915933:175303..175446Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:174416..174628TCONS_00047909-exon-scaffold_139-1510915933:174416..174628Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:173767..173970TCONS_00047909-exon-scaffold_139-1510915933:173767..173970Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:173414..173521TCONS_00047909-exon-scaffold_139-1510915933:173414..173521Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1510915933:161616..162050TCONS_00047909-exon-scaffold_139-1510915933:161616..162050Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:178074..178210TCONS_00047909-exon-scaffold_139-1491911889:178074..178210Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:177611..177763TCONS_00047909-exon-scaffold_139-1491911889:177611..177763Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:177299..177372TCONS_00047909-exon-scaffold_139-1491911889:177299..177372Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:176969..177072TCONS_00047909-exon-scaffold_139-1491911889:176969..177072Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:176479..176619TCONS_00047909-exon-scaffold_139-1491911889:176479..176619Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:176008..176133TCONS_00047909-exon-scaffold_139-1491911889:176008..176133Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:175623..175738TCONS_00047909-exon-scaffold_139-1491911889:175623..175738Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:175303..175446TCONS_00047909-exon-scaffold_139-1491911889:175303..175446Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:174416..174628TCONS_00047909-exon-scaffold_139-1491911889:174416..174628Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:173767..173970TCONS_00047909-exon-scaffold_139-1491911889:173767..173970Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:173414..173521TCONS_00047909-exon-scaffold_139-1491911889:173414..173521Clytia hemisphaericaexon
TCONS_00047909-exon-scaffold_139-1491911889:161616..162050TCONS_00047909-exon-scaffold_139-1491911889:161616..162050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:161616..178210 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.0337 67.005 89.5767 87.6642 6.63817 5.34647 22.6343 24.4988 32.5604 26.4825 35.5026 40.881 30.5864 31.6313 40.8848 45.681 54.3443 51.1192 19.3249 16.1396 32.6094 31.2548 38.0604 34.9338 41.9034 46.5505 24.2391 24.2766 24.3331 22.4066
Blast
BLAST of TCONS_00047909 vs. Swiss-Prot (Human)
Match: MAT1 (CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.244e-78
Identity = 134/305 (43.93%), Postives = 204/305 (66.89%), Query Frame = 1
Query:   49 MDEQSCPRCKSTSYRNNKLKLLVNVCGHKLCSTCVDVLFTRPSAACPQCNTALRRSDFRVQQFEDALVEKEVDIRRKIVKIFNKREEDFKTLLDYNNYLEDIEVIIFNLANKQNVDETKKKVDAYKKDNEKLIRRNNTKISQEEALMKASIEADLQSAETKRKMLVEEVENAALQKKKEKENLINDLIYANAPAEEVIARHKLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQPI--VEAPLFIYQESTREWFGPSPPEEDALQSKGYLQHIRSASSSERAGGYTESIACQRAIQEAFDCLF 957
            MD+Q CPRCK+T YRN  LKL+VNVCGH LC +CVD+LF R +  CP+C T LR+S+FRVQ FED  V+KEV+IR+K++KI+NKREEDF +L +YN++LE++E I+FNL N  ++D TKKK++ Y+K+N+ +I++N  K+++E+  ++ ++E + Q  E +R  + +E +   + K+K K+  +++L  ++ P   ++A+HK    Q + Q  + +  K   F +      H    PI  +E  L+ YQ    E +GP  PE + L   GYL H+R+AS  + AGGYT S+AC RA+Q+AF  LF
Sbjct:    1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNKQAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPVKPVTFSTGIKMGQHISLAPIHKLEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305          
The following BLAST results are available for this feature:
BLAST of TCONS_00047909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAT11.244e-7843.93CDK-activating kinase assembly factor MAT1 OS=Homo... [more]
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