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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047913 ID=TCONS_00047913|Name=TCONS_00047913|organism=Clytia hemisphaerica|type=transcript|length=1425bp
CACCGTATATAAGGGTGATCAACTGGCATTTTAAATCATTTACAAAGACA
ATCTTGAACTGGTAACATCAAGAAAAAAATACTAACCAGTATACACGACA
AACGAAAATTAACTTATTTTACTAATTCAAAAAAGAAATTCAAACGAAAT
GGAAGCTACGATGACTGTACCACAATGCAACGGATTCAACACTTTAGATG
ACTTTCTCGATTCTCTGATAACCGAAGAATTATCCAACGATAGCTTTCAC
CAGGTGCTGGCACCTAAGACTGAACAAATCAACTCAATGCCAACTTCAcc
caaaacaccaaaacacaAATTATCACAACTCGATTCACCAGGAGCTATGC
AGACTTTGACACACTCTTTGGAAAACCAACATTCACCTGTATTACCTAAA
AACAACTTTGGTATGCCACCATCAGTGATGTACTCACCACCATTAAGTCC
TGAATGTGTGCAACTTAACGTACCAGCCAGACCAGAAGAAAACACAGCTG
TTATGATGTTCCCTGCAGCCCACCCACAAGCTTTACCACCACAGATGCAA
CAAGTTGAACCACATCCCATGATGCACGCTGCTGTTCAAGGTATCCCATC
ATTCATCGGTGATAAATCTTTCGAAAAAACATACGTCTACGATCCTAAAC
CATTGACACGCAAAACACGCCGTGCATTGGTGCCCGATGaacaaaagaat
caaaaataCTGGATGAAACGTATGCGCAACAACGTCGCCGCACGAAAATC
ACGTGAAGATCGTCGACGTAAGGAACTCGAAGTTTTGGAATCAATGAAGA
ATTTGAaagatgaaaatcaaaaaatgaaaaattatattgaCACTGTTGTG
AAAGCTAACGAACAGCTGGTGGCTGATATGATGCAGATGAAACAGAAATT
ACAACAATATGAAAACAACTCTACATCCAGTAGTAAAACAACTGCTTAAT
TAACATGAACACTCTCTCTATATGATGATAATGCAGGACATTACTTCACT
Ttcatttaattaatttttcctttttctgtttctttctcatttttttaatc
ACAATTTTCTAATCTTTACTTTTGGATGTAAATATGTTTCTATTCCTCTC
CTCGATTCCGTGTAATTAGTATATAGTAtgatgaacaaatttttatattt
attatgAACAATTTtatcttttaccaaaaaaatcaaaaatagtatcttct
tttttgtcaaaatattaaaaCTTAGGATGTTGACATCTTTTAGGATTTAT
TGATGACATTTTATTCCTTTTATTTTAGTcttcttgttaattttttgtat
atCTTTATAAAAATAGTTCTATCTATAGATTTTGTTTTAGAAATGAATCT
TCTGTGTAAATATTATGAAATCTTCTATAAAAAAACAGAAAttactgaaa
aagaaattgaaaactatcaacaaaa Run BLAST on NCBI transcript from alignment at scaffold_139:280390..282158- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047913 ID=TCONS_00047913|Name=TCONS_00047913|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_139:280390..282158- (Clytia hemisphaerica)
CACCGTATATAAGGGTGATCAACTGGCATTTTAAATCATTTACAAAGACA
ATCTTGAACTGGTAACATCAAGAAAAAAATACTAACCAGTATACACGACA
AACGAAAATTAACTTATTTTACTAATTCAAAAAAGGTAAGGAAATTTTGA
ACTTTTAAACAATTGATAGTAAATGGGGTGTGTTCTTTGATTATTTTAAA
GGGCATCTAAGGTCTTCATCTTTCTTGTGACATTCCTACACGGAATTTCT
CTTGTGGTTTTGATTCTAAATCCGGTCTGTATGTTCAAATTTTGTATTGA
TTTCATTAGTTCTTAGTTGGTATTGTTTCAAAAGGATTATCTTTGAGATT
ATCCATGCTAAAAGAAACCGTTTGAATTGTGCATGTTTTTTTTCAAGGGT
TAATCTTAGTCCATCAAAGAGTATAATTGTAATTTTTGAATCTGTATTTA
ACCAAACATTTTCACTTTTTTATCATCAGAAATTCAAACGAAATGGAAGC
TACGATGACTGTACCACAATGCAACGGATTCAACACTTTAGATGACTTTC
TCGATTCTCTGATAACCGAAGAATTATCCAACGATAGCTTTCACCAGGTG
CTGGCACCTAAGACTGAACAAATCAACTCAATGCCAACTTCACCCAAAAC
ACCAAAACACAAATTATCACAACTCGATTCACCAGGAGCTATGCAGACTT
TGACACACTCTTTGGAAAACCAACATTCACCTGTATTACCTAAAAACAAC
TTTGGTATGCCACCATCAGTGATGTACTCACCACCATTAAGTCCTGAATG
TGTGCAACTTAACGTACCAGCCAGACCAGAAGAAAACACAGCTGTTATGA
TGTTCCCTGCAGCCCACCCACAAGCTTTACCACCACAGATGCAACAAGTT
GAACCACATCCCATGATGCACGCTGCTGTTCAAGGTATCCCATCATTCAT
CGGTGATAAATCTTTCGAAAAAACATACGTCTACGATCCTAAACCATTGA
CACGCAAAACACGCCGTGCATTGGTGCCCGATGAACAAAAGAATCAAAAA
TACTGGATGAAACGTATGCGCAACAACGTCGCCGCACGAAAATCACGTGA
AGATCGTCGACGTAAGGAACTCGAAGTTTTGGAATCAATGAAGAATTTGA
AAGATGAAAATCAAAAAATGAAAAATTATATTGACACTGTTGTGAAAGCT
AACGAACAGCTGGTGGCTGATATGATGCAGATGAAACAGAAATTACAACA
ATATGAAAACAACTCTACATCCAGTAGTAAAACAACTGCTTAATTAACAT
GAACACTCTCTCTATATGATGATAATGCAGGACATTACTTCACTTTCATT
TAATTAATTTTTCCTTTTTCTGTTTCTTTCTCATTTTTTTAATCACAATT
TTCTAATCTTTACTTTTGGATGTAAATATGTTTCTATTCCTCTCCTCGAT
TCCGTGTAATTAGTATATAGTATGATGAACAAATTTTTATATTTATTATG
AACAATTTTATCTTTTACCAAAAAAATCAAAAATAGTATCTTCTTTTTTG
TCAAAATATTAAAACTTAGGATGTTGACATCTTTTAGGATTTATTGATGA
CATTTTATTCCTTTTATTTTAGTCTTCTTGTTAATTTTTTGTATATCTTT
ATAAAAATAGTTCTATCTATAGATTTTGTTTTAGAAATGAATCTTCTGTG
TAAATATTATGAAATCTTCTATAAAAAAACAGAAATTACTGAAAAAGAAA
TTGAAAACTATCAACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047913-exon-scaffold_139-1575043694:282024..282158 | TCONS_00047913-exon-scaffold_139-1575043694:282024..282158 | Clytia hemisphaerica | exon |
| TCONS_00047913-exon-scaffold_139-1575043694:280390..281679 | TCONS_00047913-exon-scaffold_139-1575043694:280390..281679 | Clytia hemisphaerica | exon |
| TCONS_00047913-exon-scaffold_139-1510915933:282024..282158 | TCONS_00047913-exon-scaffold_139-1510915933:282024..282158 | Clytia hemisphaerica | exon |
| TCONS_00047913-exon-scaffold_139-1510915933:280390..281679 | TCONS_00047913-exon-scaffold_139-1510915933:280390..281679 | Clytia hemisphaerica | exon |
| TCONS_00047913-exon-scaffold_139-1491911889:282024..282158 | TCONS_00047913-exon-scaffold_139-1491911889:282024..282158 | Clytia hemisphaerica | exon |
| TCONS_00047913-exon-scaffold_139-1491911889:280390..281679 | TCONS_00047913-exon-scaffold_139-1491911889:280390..281679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:280390..282158 - |
Blast
The following BLAST results are available for this feature:
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