TCONS_00047919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047919
Unique NameTCONS_00047919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047919 ID=TCONS_00047919|Name=TCONS_00047919|organism=Clytia hemisphaerica|type=transcript|length=2941bp
TTATATGATGGTGTAATCTTTCGCCATCCCCTTTTTGACACGAGAATGCT
TATCAACGCATTTTAAAGCTTCTCAGATTCTTGTGTACTAGTCTAAAATA
GAATAATCTACCTTGTTATGGAGCTGAATATCCATTATAAAGAATTTACT
TTTAGTGAAGTGTGTAATAAATCAGCAATTAACTTGATCattaggaaaaa
ttattttgacacTGAATCNTGATGTTGATGAAACTGGAGGGAAAACAAGG
GACTGCTTGAAGCATGCTAGCTAATCAAAAACAATCTTTTCTACCCTCCA
TACTTAAAGAAGTTGAGCGTAGGGAGGAAGCTAATCTGGAGAAAAACCTT
AAATGGTGGCGTTTGTATTCTGATTGGCGTTTCCATGGCTTTGATTCGAC
AAATAGATACTACACAGCTCTCGACGAACAAAAGTCTGACTACCCTTTTT
TTGATATAGCTGTTCTATATTATGATGATAATGAAAGCAAAGTTAAGCGT
CTTAGCGTAACACTTTGTATGGAGATATCGCCACAAGAAGATGGCCTATT
ATATGACCATGAGTCATGCCGCTGGTTTAATATAGAAACAATTTGGGATA
TCGAGGGCTTCCAGACTACTCTATACTCTGGCACTGTGGGACATTTATTT
CCCGAAGTGACTAGTCCAACTTATTCAGAACAAATATCAGTGAGCACAAG
AGAAGTGAACGATCAAAATAAACTTGTAGATTTTCCTTTAGATTTAACGT
TGCTATATTCGGCGATCAAGAAAAGTCAATCTATTGGTGATGTGCTCCTA
CTTTGTTTTGATGAAGAGAGCGGATACGACAACATTTATGTCTCTCTGAT
CAAATTTGACGAACAAGGGATCACTTTATATAAAAGTATAACCATACCGA
TAGGGGAACATCAAGTTTCATTTTCAGATCATTCTATAGGTTTAGATTGG
CATGATGAGCACGTTGATCCAAATATATTTCTTGATTTCGAGGCAGAAAG
AATCTATTTTACAGGTCATGGTGGACCTCGCGACGATTACGACTGTCACT
TGACTTTGTTAAGTTGTTTTGACTTTTCAGGAAAACATTTATTCTCATTC
ACAGTCGGCGATGACAAGACGAAATCAGAATCTTTCTCATTCTTTACTCA
AGTCCACGGCTCAGTTTTTGTCTCTGTAACCTCACACAAGATGGTTCAAC
TTTTAAAGGTGACTGAAAAGGGAATTCTTACAATGAAGGAATCTCAGCTG
TACATAAATGTCGAATTTAACGttaattatacaaattatagaGCCTATAG
ATTGATGAAGCaatttgaaagatatttgtTATGTGTTGGCATAACAACAA
GAAATGAAAGATACGAAGCCAAGAGTACAAGCTACTTCGTGTTTGACATC
TCGAATGGTGAAAAAGTCTACCATTGTGTTTTAGATGGTCCCAGGGTCTG
GAAGCTGGTTTTCAACAAGGATATGAGCGAATTAATGTATAGATCAAGTG
ATATTCATGGTATATTTAATTTTCGAAAATCAACACTTATTGATGGGACC
AGTTTGAAGCACAAAGCTAGACTTGCATGTTTGAAATCTTTCACGGATGA
ATATTTAAGTTCAAAATTACCGAAACACCTTCTACAATATCTTGGTAAAA
CCTGTTAACAACTTTTATTGAAAAACATACATAACTGAGAAACATTATTT
AAATTTTTTTCTATTTTTGCAGTATTATAATTTGGAACTAGTTTAACTAA
TTATTCTAATATTTTTACCTCTAGCTGGCGAGCGAAGAGAGTGTTATTTT
GTGATGTTTAAATGGAGCTACGAATATGGGGTATCTTCAAATATCCAAAT
GTGTCCAAAGACAAGTCAGTATGATCGAATCTAGTAATATTAGTTTGCTC
CTAGATCTGCTCCTCACACCACATGTTTATTTCCTGTGGATTTCAATTCC
TCTGTAAAAAACTGTATGGTACTCCATTTTCAATTGCTCCTGAATGTAAA
AACAACGTTCTAAATCGAGTAAGTGTTATTAATCGACTTTCAGGTAACtg
caattcaatttttttggttaGTAAAGGCAACTTTCAGAATAATATAGGGC
CAATATAAAGCAACAAGATAAATCGCAAATTAGGAGGTTGAGTATTATTT
gatatttcataaattttaattCTAAATCTATCATTATTTACAGTTTAAAA
AATTGTACAATTTATAATCAATCAAAAcgagtttaaaaaaatctgaataA
GAAAATGTGTAAGAAATGTATCAATAATTTCACATAATGAATGAAATACA
TAGTCCCACTAAATGCATCAGaatacacgcttctttttttacaagaatat
cttctataagaatatcagggtgaaaattaaCAAAAGAGATATAGTGTACT
TTCTTTTGTGTATGTATACGTATATTAGAACTACTCACTTAAGTTGtcta
aaaaggaaatttttctctgaaataATAAGAATACGTTACGAATATTTCAC
CTggaattttggcaatttcttaagaatacttgaccctcagtcAAAGTACA
TTActgatattcttattaaaaaaacgtgtacaagaGCACCGTTTACCAAA
GCAAGTTCCTTATAAAACAGAAGAATATAATATCATTTTGGGGAATCCTT
TTATTAGACATCATGGAGTTCTGATGTCACTGGATTAGTACTTCGATAAA
TTTGCACTTTTGTTGAAAGAATATTGTTCACTTACGACCAGCGATGGTTT
GATagcatcaaaatctttgcagCCTGAAAACATAGCAGTATAATATTTTT
AAGTTTCAATGATACAGTATTCAGATACCTTATCGGGCCTTTTTATGggg
tcaagttgaacattttacaagaatttttgtcattggattggtcgttaact
attcaaacaaaaacttttattatatttttctaaagaacgcg
Run BLAST on NCBI

protein sequence of TCONS_00047919-protein

>TCONS_00047919-protein ID=TCONS_00047919-protein|Name=TCONS_00047919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MLANQKQSFLPSILKEVERREEANLEKNLKWWRLYSDWRFHGFDSTNRYY
TALDEQKSDYPFFDIAVLYYDDNESKVKRLSVTLCMEISPQEDGLLYDHE
SCRWFNIETIWDIEGFQTTLYSGTVGHLFPEVTSPTYSEQISVSTREVND
QNKLVDFPLDLTLLYSAIKKSQSIGDVLLLCFDEESGYDNIYVSLIKFDE
QGITLYKSITIPIGEHQVSFSDHSIGLDWHDEHVDPNIFLDFEAERIYFT
GHGGPRDDYDCHLTLLSCFDFSGKHLFSFTVGDDKTKSESFSFFTQVHGS
VFVSVTSHKMVQLLKVTEKGILTMKESQLYINVEFNVNYTNYRAYRLMKQ
FERYLLCVGITTRNERYEAKSTSYFVFDISNGEKVYHCVLDGPRVWKLVF
NKDMSELMYRSSDIHGIFNFRKSTLIDGTSLKHKARLACLKSFTDEYLSS
KLPKHLLQYLGKTC
Run BLAST on NCBI

transcript from alignment at scaffold_139:424040..427071-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047919 ID=TCONS_00047919|Name=TCONS_00047919|organism=Clytia hemisphaerica|type=transcript|length=3032bp|location=Sequence derived from alignment at scaffold_139:424040..427071- (Clytia hemisphaerica)
TTATATGATGGTGTAATCTTTCGCCATCCCCTTTTTGACACGAGAATGCT
TATCAACGCATTTTAAAGCTTCTCAGATTCTTGTGTACTAGTCTAAAATA
GAATAATCTACCTTGTTATGGAGCTGAATATCCATTATAAAGAATTTACT
TTTAGTGAAGTGTGTAATAAATCAGCAATTAACTTGATCATTAGGAAAAA
TTATTTTGACACTGATTCATGATAGAGCGAAAGTCTATGAAAAGATGTTG
ATGAAACTGGAGGGAAAACAAGGGACTGCTTGAAGCATGTTAGCTAATCA
AAAACAATCNTGATGTTGATGAAACTGGAGGGAAAACAAGGGACTGCTTG
AAGCATGCTAGCTAATCAAAAACAATCTTTTCTACCCTCCATACTTAAAG
AAGTTGAGCGTAGGGAGGAAGCTAATCTGGAGAAAAACCTTAAATGGTGG
CGTTTGTATTCTGATTGGCGTTTCCATGGCTTTGATTCGACAAATAGATA
CTACACAGCTCTCGACGAACAAAAGTCTGACTACCCTTTTTTTGATATAG
CTGTTCTATATTATGATGATAATGAAAGCAAAGTTAAGCGTCTTAGCGTA
ACACTTTGTATGGAGATATCGCCACAAGAAGATGGCCTATTATATGACCA
TGAGTCATGCCGCTGGTTTAATATAGAAACAATTTGGGATATCGAGGGCT
TCCAGACTACTCTATACTCTGGCACTGTGGGACATTTATTTCCCGAAGTG
ACTAGTCCAACTTATTCAGAACAAATATCAGTGAGCACAAGAGAAGTGAA
CGATCAAAATAAACTTGTAGATTTTCCTTTAGATTTAACGTTGCTATATT
CGGCGATCAAGAAAAGTCAATCTATTGGTGATGTGCTCCTACTTTGTTTT
GATGAAGAGAGCGGATACGACAACATTTATGTCTCTCTGATCAAATTTGA
CGAACAAGGGATCACTTTATATAAAAGTATAACCATACCGATAGGGGAAC
ATCAAGTTTCATTTTCAGATCATTCTATAGGTTTAGATTGGCATGATGAG
CACGTTGATCCAAATATATTTCTTGATTTCGAGGCAGAAAGAATCTATTT
TACAGGTCATGGTGGACCTCGCGACGATTACGACTGTCACTTGACTTTGT
TAAGTTGTTTTGACTTTTCAGGAAAACATTTATTCTCATTCACAGTCGGC
GATGACAAGACGAAATCAGAATCTTTCTCATTCTTTACTCAAGTCCACGG
CTCAGTTTTTGTCTCTGTAACCTCACACAAGATGGTTCAACTTTTAAAGG
TGACTGAAAAGGGAATTCTTACAATGAAGGAATCTCAGCTGTACATAAAT
GTCGAATTTAACGTTAATTATACAAATTATAGAGCCTATAGATTGATGAA
GCAATTTGAAAGATATTTGTTATGTGTTGGCATAACAACAAGAAATGAAA
GATACGAAGCCAAGAGTACAAGCTACTTCGTGTTTGACATCTCGAATGGT
GAAAAAGTCTACCATTGTGTTTTAGATGGTCCCAGGGTCTGGAAGCTGGT
TTTCAACAAGGATATGAGCGAATTAATGTATAGATCAAGTGATATTCATG
GTATATTTAATTTTCGAAAATCAACACTTATTGATGGGACCAGTTTGAAG
CACAAAGCTAGACTTGCATGTTTGAAATCTTTCACGGATGAATATTTAAG
TTCAAAATTACCGAAACACCTTCTACAATATCTTGGTAAAACCTGTTAAC
AACTTTTATTGAAAAACATACATAACTGAGAAACATTATTTAAATTTTTT
TCTATTTTTGCAGTATTATAATTTGGAACTAGTTTAACTAATTATTCTAA
TATTTTTACCTCTAGCTGGCGAGCGAAGAGAGTGTTATTTTGTGATGTTT
AAATGGAGCTACGAATATGGGGTATCTTCAAATATCCAAATGTGTCCAAA
GACAAGTCAGTATGATCGAATCTAGTAATATTAGTTTGCTCCTAGATCTG
CTCCTCACACCACATGTTTATTTCCTGTGGATTTCAATTCCTCTGTAAAA
AACTGTATGGTACTCCATTTTCAATTGCTCCTGAATGTAAAAACAACGTT
CTAAATCGAGTAAGTGTTATTAATCGACTTTCAGGTAACTGCAATTCAAT
TTTTTTGGTTAGTAAAGGCAACTTTCAGAATAATATAGGGCCAATATAAA
GCAACAAGATAAATCGCAAATTAGGAGGTTGAGTATTATTTGATATTTCA
TAAATTTTAATTCTAAATCTATCATTATTTACAGTTTAAAAAATTGTACA
ATTTATAATCAATCAAAACGAGTTTAAAAAAATCTGAATAAGAAAATGTG
TAAGAAATGTATCAATAATTTCACATAATGAATGAAATACATAGTCCCAC
TAAATGCATCAGAATACACGCTTCTTTTTTTACAAGAATATCTTCTATAA
GAATATCAGGGTGAAAATTAACAAAAGAGATATAGTGTACTTTCTTTTGT
GTATGTATACGTATATTAGAACTACTCACTTAAGTTGTCTAAAAAGGAAA
TTTTTCTCTGAAATAATAAGAATACGTTACGAATATTTCACCTGGAATTT
TGGCAATTTCTTAAGAATACTTGACCCTCAGTCAAAGTACATTACTGATA
TTCTTATTAAAAAAACGTGTACAAGAGCACCGTTTACCAAAGCAAGTTCC
TTATAAAACAGAAGAATATAATATCATTTTGGGGAATCCTTTTATTAGAC
ATCATGGAGTTCTGATGTCACTGGATTAGTACTTCGATAAATTTGCACTT
TTGTTGAAAGAATATTGTTCACTTACGACCAGCGATGGTTTGATAGCATC
AAAATCTTTGCAGCCTGAAAACATAGCAGTATAATATTTTTAAGTTTCAA
TGATACAGTATTCAGATACCTTATCGGGCCTTTTTATGGGGTCAAGTTGA
ACATTTTACAAGAATTTTTGTCATTGGATTGGTCGTTAACTATTCAAACA
AAAACTTTTATTATATTTTTCTAAAGAACGCG

Coding sequence (CDS) from alignment at scaffold_139:424040..427071-

>TCONS_00047919 ID=TCONS_00047919|Name=TCONS_00047919|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_139:424040..427071- (Clytia hemisphaerica)
ATGCTAGCTAATCAAAAACAATCTTTTCTACCCTCCATACTTAAAGAAGT
TGAGCGTAGGGAGGAAGCTAATCTGGAGAAAAACCTTAAATGGTGGCGTT
TGTATTCTGATTGGCGTTTCCATGGCTTTGATTCGACAAATAGATACTAC
ACAGCTCTCGACGAACAAAAGTCTGACTACCCTTTTTTTGATATAGCTGT
TCTATATTATGATGATAATGAAAGCAAAGTTAAGCGTCTTAGCGTAACAC
TTTGTATGGAGATATCGCCACAAGAAGATGGCCTATTATATGACCATGAG
TCATGCCGCTGGTTTAATATAGAAACAATTTGGGATATCGAGGGCTTCCA
GACTACTCTATACTCTGGCACTGTGGGACATTTATTTCCCGAAGTGACTA
GTCCAACTTATTCAGAACAAATATCAGTGAGCACAAGAGAAGTGAACGAT
CAAAATAAACTTGTAGATTTTCCTTTAGATTTAACGTTGCTATATTCGGC
GATCAAGAAAAGTCAATCTATTGGTGATGTGCTCCTACTTTGTTTTGATG
AAGAGAGCGGATACGACAACATTTATGTCTCTCTGATCAAATTTGACGAA
CAAGGGATCACTTTATATAAAAGTATAACCATACCGATAGGGGAACATCA
AGTTTCATTTTCAGATCATTCTATAGGTTTAGATTGGCATGATGAGCACG
TTGATCCAAATATATTTCTTGATTTCGAGGCAGAAAGAATCTATTTTACA
GGTCATGGTGGACCTCGCGACGATTACGACTGTCACTTGACTTTGTTAAG
TTGTTTTGACTTTTCAGGAAAACATTTATTCTCATTCACAGTCGGCGATG
ACAAGACGAAATCAGAATCTTTCTCATTCTTTACTCAAGTCCACGGCTCA
GTTTTTGTCTCTGTAACCTCACACAAGATGGTTCAACTTTTAAAGGTGAC
TGAAAAGGGAATTCTTACAATGAAGGAATCTCAGCTGTACATAAATGTCG
AATTTAACGTTAATTATACAAATTATAGAGCCTATAGATTGATGAAGCAA
TTTGAAAGATATTTGTTATGTGTTGGCATAACAACAAGAAATGAAAGATA
CGAAGCCAAGAGTACAAGCTACTTCGTGTTTGACATCTCGAATGGTGAAA
AAGTCTACCATTGTGTTTTAGATGGTCCCAGGGTCTGGAAGCTGGTTTTC
AACAAGGATATGAGCGAATTAATGTATAGATCAAGTGATATTCATGGTAT
ATTTAATTTTCGAAAATCAACACTTATTGATGGGACCAGTTTGAAGCACA
AAGCTAGACTTGCATGTTTGAAATCTTTCACGGATGAATATTTAAGTTCA
AAATTACCGAAACACCTTCTACAATATCTTGGTAAAACCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030489XLOC_030489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047919-proteinTCONS_00047919-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047919-exon-scaffold_139-1575043694:426858..427071TCONS_00047919-exon-scaffold_139-1575043694:426858..427071Clytia hemisphaericaexon
TCONS_00047919-exon-scaffold_139-1575043694:424040..426766TCONS_00047919-exon-scaffold_139-1575043694:424040..426766Clytia hemisphaericaexon
TCONS_00047919-exon-scaffold_139-1510915933:426858..427071TCONS_00047919-exon-scaffold_139-1510915933:426858..427071Clytia hemisphaericaexon
TCONS_00047919-exon-scaffold_139-1510915933:424040..426766TCONS_00047919-exon-scaffold_139-1510915933:424040..426766Clytia hemisphaericaexon
TCONS_00047919-exon-scaffold_139-1491911889:426858..427071TCONS_00047919-exon-scaffold_139-1491911889:426858..427071Clytia hemisphaericaexon
TCONS_00047919-exon-scaffold_139-1491911889:424040..426766TCONS_00047919-exon-scaffold_139-1491911889:424040..426766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:424040..427071 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0692582	0.0607766	0.0475768	0.0925148	1.2358	0.250589	0.16992	0.0634467	0.0965378	0.156552	0.155361	0.0899498	1.11283	1.15583	0.0783587	0.0368069	0.120614	0	1.91823	11.8378	0.614977	0.835932	0.196713	0.0448461	0.0373972	0.122065	1.54078	1.67234	1.24793	0.202201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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