TCONS_00047924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047924
Unique NameTCONS_00047924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047924 ID=TCONS_00047924|Name=TCONS_00047924|organism=Clytia hemisphaerica|type=transcript|length=1735bp
gaaaaatcttttaaattgaaaaatgacgaTTGGAAAAAATCGGCTTGTAG
TTTGCAAGTAAAATATCGTATCTTGATATCAAGAAAAAGTTGATTGAAGA
CGTAGTTGCCAAGTTGAGTATACAATAATactACGTTTACTGGTCAACcg
taaaaatgtcatcaattaTCGTCAATTTACAAAATTATATCGATTTATCA
AAAGAAAGACACATAGTCCATCAAAAAGAAGCTTTGTTTTGGAACAAAGT
CAATACTTATGCCAATATTTCGCTCATAATTCTCACTTCAATTGCTACTG
TATTGTCCGTTATGGAAGGTTCAATCCCGTTCTATATTGTTCCTATATCC
ACTGGCTTGGCGACGATCATATCGAGTTTGATTGGAGTTTTCAAACCCTT
TGATAAACGCAATGTCCAGGAGGATTCATCCAAGAAATTCAAAGTTTTGA
GCTTAAAACTGGTCGCATGTAAAAGCATGAAAGATTATAATGAACTTCGA
GCTGAGATTTTGGAAACCATGATGGATGAGCCATTCActagagaaaagaa
aaagaagagagGAAATCAGAATAAGCAAGTTGGAAAGGACGGTCAAAATG
AAGAGACAGCAAAGTTATTGGATGAACAACACGGAGGGACAGGAAACCAT
GACTACCAAGTCAAACAAAAAGCAAAGAACTCAATGGTACACGAGAAAAG
CCTCGACGATGATATAAAACTTTGGAATTTAGACCCTGAAATGAGAAAAG
CTGCAATAATCgaagaaattaaaatgaaaacgTTTGAATACAGCCTCTTA
CAACCGCATGGTGGCAAAATGAAAGAACAAAGTGCGCAGAATCTCAAGCA
TCGTGAAACTTCAAATAACCAGCAAGAACAGCCTATCAAGTCGACCGAGG
AATGCCAATTACAAGCAGGTTATTCAAATTCCATTCCAGAAAAGAACAAA
TGTCATTTTGATATAGCGCAAGAAAGAGAAACTGATAATACAGAGTCTGA
ACTTGATGAAAAGAATGAAGATTTGGAAGTCCCAGTCGCAGAACTGAATC
AATCATTCAGTAGTTCATTACCTAAGGAGATTATAGAAGAGGCTGTTAAT
TGTAGACGAGAGCTCTACAATATAGAGGAGGCTCACGTACAGCCAATTGA
TGTAATGCAGTTAGAATTTTCTGATAATGATAATGACGCTTCGCTTGGAG
ATACAAATCTACAAGAAGATGAAAGCTCCGAGTAAGATCAAAAAGTGATT
TCTCATCCACTGCGCACACAGGTCATAGAAGAGATATTGGACAACGTTAA
TGGACCGATATCCTGTATTGAAGAGCCAGTCGATATGCCCGAAACACCAT
TATCATATCCAGAGTTGGCTAAACAAACTGGTTCATTAGTAGTTCCATCT
GAAAGTGACGATGTCACTATTGAAATTGGAGCTACTTATCCATTACCAAA
TGTTATGAGAATCACCATCGATATTCCACAAGTGGCGCGTGTGGCAGATT
GTAAAGATGAAGAACAAGAGAGAGATGTGCTAAAAAATCAGGGAGAAATA
GAAATACTAGAAGGGCGGCATAAACTGGAAGAAGATGATATAGGTGATAC
AAAGGAAAAAATATCACTTCTACACTCGCCCTTTAAAGATGAATAACTGT
TTAGCGAtactacattttttaaaaatgtattgAATTTATTTGCATACTTA
TCCTTCTTATTCTGGATGAGTCGGCCAATAGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00047924-protein

>TCONS_00047924-protein ID=TCONS_00047924-protein|Name=TCONS_00047924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSSIIVNLQNYIDLSKERHIVHQKEALFWNKVNTYANISLIILTSIATVL
SVMEGSIPFYIVPISTGLATIISSLIGVFKPFDKRNVQEDSSKKFKVLSL
KLVACKSMKDYNELRAEILETMMDEPFTREKKKKRGNQNKQVGKDGQNEE
TAKLLDEQHGGTGNHDYQVKQKAKNSMVHEKSLDDDIKLWNLDPEMRKAA
IIEEIKMKTFEYSLLQPHGGKMKEQSAQNLKHRETSNNQQEQPIKSTEEC
QLQAGYSNSIPEKNKCHFDIAQERETDNTESELDEKNEDLEVPVAELNQS
FSSSLPKEIIEEAVNCRRELYNIEEAHVQPIDVMQLEFSDNDNDASLGDT
NLQEDESSE
Run BLAST on NCBI

transcript from alignment at scaffold_139:518485..522265-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047924 ID=TCONS_00047924|Name=TCONS_00047924|organism=Clytia hemisphaerica|type=transcript|length=3781bp|location=Sequence derived from alignment at scaffold_139:518485..522265- (Clytia hemisphaerica)
GAAAAATCTTTTAAATTGAAAAATGACGATTGGAAAAAATCGGCTTGTAG
TTTGCAAGTAAAATATCGTATCTTGATATCAAGAAAAAGTTGATTGAAGA
CGTAGTTGCCAAGTTGAGTATACAATAATGTGTAGAAATGATTACCTTAA
GGGGACTTATTTTGGCGGGAACTAATTTTGGCGAGTGGCGAAAATCTTAA
AAAAATTCAATTTTGGCGGGAACTAATTTCGGCGAATGCGTGTGTGCATG
TTTCGTTCATTCAATTTTTGACGACATTTTTGGTCAAAAAATTGAATTTC
GATGGCAATATTCAATTTTCAATTTTCGAGTTAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCA
ATTTTCAATTTTTTAACTCGAAAATTGAAAATTACCATCGAAATTCAATT
TTTTGACCAGAAATGTCGTCAAAAATTGATTGAACGGAACATGCCTGCAT
GTTCGGCGAATGACAGCATAAATCTGTTCTATTTTGCCTTATTTTGAGCA
ATTTTGATGAATTTCAGGGGTTATTTAGGAGGCAAGGAAACAAAAAATTT
AATTTTGGTGGGAACTTATTTTGGCGAGTGCGCAAAATATTTAATTTTGG
TGGGAACTAAATTTCGCGAATTTCATCTAAATTCACCAAATTCGCCAAAA
TTAGTTCCCGCCAAAATAAGTTCCCTTAAGGTAAACTATAAAAATTTGAA
AGAAAAAATAAAGATTTAACCAAACGAAACTTTTAAATGTTGAAAATTTG
ATTCTTAGATGCTCAAAATTGACCATTCCAAGTGGATAAGCAATCACAAG
ATATTACAACAAGTTAATAACATTTAACCATCTAAAAGCTTTTAATCTCA
TATCATATTTTTTTTCTTCTTTTAGACTACGTTTACTGGTCAACCGTAAA
AATGTCATCAATTATCGTCAATTTACAAAATTATATCGATTTATCAAAAG
AAAGACACATAGTCCATCAAAAAGAAGCTTTGTTTTGGAACAAAGTCAAT
ACTTATGCCAATATTTCGCTCATAATTCTCACTTCAATTGCTACTGTATT
GTCCGTTATGGAAGGTTCAATCCCGTTCTATATTGTTCCTATATCCACTG
GCTTGGCGACGATCATATCGAGTTTGATTGGAGTTTTCAAACCCTTTGAT
AAACGCAATGTCCAGGAGGATTCATCCAAGAAATTCAAAGTTTTGAGCTT
AAAACTGGTCGCATGTAAAAGCATGAAAGATTATAATGAACTTCGAGCTG
AGATTTTGGAAACCATGATGGATGAGCCATTCACTAGAGAAAAGAAAAAG
AAGAGAGGAAATCAGAATAAGCAAGTTGGAAAGGACGGTCAAAATGAAGA
GACAGCAAAGTTATTGGATGAACAACACGGAGGGACAGGAAACCATGACT
ACCAAGTCAAACAAAAAGCAAAGAACTCAATGGTACACGAGAAAAGCCTC
GACGATGATATAAAACTTTGGAATTTAGACCCTGAAATGAGAAAAGCTGC
AATAATCGAAGAAATTAAAATGAAAACGTTTGAATACAGCCTCTTACAAC
CGCATGGTGGCAAAATGAAAGAACAAAGTGCGCAGAATCTCAAGCATCGT
GAAACTTCAAATAACCAGCAAGAACAGCCTATCAAGTCGACCGAGGAATG
CCAATTACAAGCAGGTTATTCAAATTCCATTCCAGAAAAGAACAAATGTC
ATTTTGATATAGCGCAAGAAAGAGAAACTGATAATACAGAGTCTGAACTT
GATGAAAAGAATGAAGATTTGGAAGTCCCAGTCGCAGAACTGAATCAATC
ATTCAGTAGTTCATTACCTAAGGAGATTATAGAAGAGGCTGTTAATTGTA
GACGAGAGCTCTACAATATAGAGGAGGCTCACGTACAGCCAATTGATGTA
ATGCAGTTAGAATTTTCTGATAATGATAATGACGCTTCGCTTGGAGATAC
AAATCTACAAGAAGATGAAAGCTCCGAGTAAGATCAAAAAGTGATTTCTC
ATCCACTGCGCACACAGGTCATAGAAGAGATATTGGACAACGTTAATGGA
CCGATATCCTGTATTGAAGAGCCAGTCGATATGCCCGAAACACCATTATC
ATATCCAGAGTTGGCTAAACAAACTGGTTCATTAGTAGTTCCATCTGAAA
GTGACGATGTCACTATTGAAATTGGAGCTACTTATCCATTACCAAATGTT
ATGAGAATCACCATCGATATTCCACAAGTGGCGCGTGTGGCAGATTGTAA
AGATGAAGAACAAGAGAGAGATGTGCTAAAAAATCAGGGAGAAATAGAAA
TACTAGAAGGGCGGCATAAACTGGAAGAAGATGATATAGGTGATACAAAG
GAAAAAATATCACTTCTACACTCGCCCTTTAAAGATGAATAACTGTTTAG
CGATACTACATTTTTTAAAAATGTATTGAATTTATTTGCATACTTATCCT
TCTTATTCTGGATGAGTCGGCCAATAGAAAC

Coding sequence (CDS) from alignment at scaffold_139:518485..522265-

>TCONS_00047924 ID=TCONS_00047924|Name=TCONS_00047924|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_139:518485..522265- (Clytia hemisphaerica)
ATGTCATCAATTATCGTCAATTTACAAAATTATATCGATTTATCAAAAGA
AAGACACATAGTCCATCAAAAAGAAGCTTTGTTTTGGAACAAAGTCAATA
CTTATGCCAATATTTCGCTCATAATTCTCACTTCAATTGCTACTGTATTG
TCCGTTATGGAAGGTTCAATCCCGTTCTATATTGTTCCTATATCCACTGG
CTTGGCGACGATCATATCGAGTTTGATTGGAGTTTTCAAACCCTTTGATA
AACGCAATGTCCAGGAGGATTCATCCAAGAAATTCAAAGTTTTGAGCTTA
AAACTGGTCGCATGTAAAAGCATGAAAGATTATAATGAACTTCGAGCTGA
GATTTTGGAAACCATGATGGATGAGCCATTCACTAGAGAAAAGAAAAAGA
AGAGAGGAAATCAGAATAAGCAAGTTGGAAAGGACGGTCAAAATGAAGAG
ACAGCAAAGTTATTGGATGAACAACACGGAGGGACAGGAAACCATGACTA
CCAAGTCAAACAAAAAGCAAAGAACTCAATGGTACACGAGAAAAGCCTCG
ACGATGATATAAAACTTTGGAATTTAGACCCTGAAATGAGAAAAGCTGCA
ATAATCGAAGAAATTAAAATGAAAACGTTTGAATACAGCCTCTTACAACC
GCATGGTGGCAAAATGAAAGAACAAAGTGCGCAGAATCTCAAGCATCGTG
AAACTTCAAATAACCAGCAAGAACAGCCTATCAAGTCGACCGAGGAATGC
CAATTACAAGCAGGTTATTCAAATTCCATTCCAGAAAAGAACAAATGTCA
TTTTGATATAGCGCAAGAAAGAGAAACTGATAATACAGAGTCTGAACTTG
ATGAAAAGAATGAAGATTTGGAAGTCCCAGTCGCAGAACTGAATCAATCA
TTCAGTAGTTCATTACCTAAGGAGATTATAGAAGAGGCTGTTAATTGTAG
ACGAGAGCTCTACAATATAGAGGAGGCTCACGTACAGCCAATTGATGTAA
TGCAGTTAGAATTTTCTGATAATGATAATGACGCTTCGCTTGGAGATACA
AATCTACAAGAAGATGAAAGCTCCGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030493XLOC_030493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047924-proteinTCONS_00047924-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047924-exon-scaffold_139-1575043694:522137..522265TCONS_00047924-exon-scaffold_139-1575043694:522137..522265Clytia hemisphaericaexon
TCONS_00047924-exon-scaffold_139-1575043694:518485..520090TCONS_00047924-exon-scaffold_139-1575043694:518485..520090Clytia hemisphaericaexon
TCONS_00047924-exon-scaffold_139-1510915933:522137..522265TCONS_00047924-exon-scaffold_139-1510915933:522137..522265Clytia hemisphaericaexon
TCONS_00047924-exon-scaffold_139-1510915933:518485..520090TCONS_00047924-exon-scaffold_139-1510915933:518485..520090Clytia hemisphaericaexon
TCONS_00047924-exon-scaffold_139-1491911889:522137..522265TCONS_00047924-exon-scaffold_139-1491911889:522137..522265Clytia hemisphaericaexon
TCONS_00047924-exon-scaffold_139-1491911889:518485..520090TCONS_00047924-exon-scaffold_139-1491911889:518485..520090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:518485..522265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325484	0.204042	0.157941	0.11114	2.18571	1.56315	2.54528	2.72697	1.26075	1.3003	0.508359	0.913533	3.92388	3.47748	2.04054	1.92617	4.12846	2.50885	4.23672	5.84298	5.5827	4.42327	0.833657	1.05636	2.64589	1.97593	3.31249	1.93925	0.914116	0.607483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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