TCONS_00047975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047975
Unique NameTCONS_00047975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047975 ID=TCONS_00047975|Name=TCONS_00047975|organism=Clytia hemisphaerica|type=transcript|length=168bp
NNAAAAAAACGATTTGGTATGTAAACTTTGTATGGTTTGATTACTCGAAA
TGTGACATTTATGTAAACGAAACactgaaaactaatttttattattttgg
aagcCGGATATCCACCGGATgtgaaaaaagccaaatttgcacaatacttg
taaatttgtaaattgcTA
Run BLAST on NCBI

transcript from alignment at scaffold_139:755433..755600

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047975 ID=TCONS_00047975|Name=TCONS_00047975|organism=Clytia hemisphaerica|type=transcript|length=168bp|location=Sequence derived from alignment at scaffold_139:755433..755600 (Clytia hemisphaerica)
TAgcaatttacaaatttacaagtattgtgcaaatttggcttttttcacAT
CCGGTGGATATCCGgcttccaaaataataaaaattagttttcagtGTTTC
GTTTACATAAATGTCACATTTCGAGTAATCAAACCATACAAAGTTTACAT
ACCAAATCGTTTTTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030536XLOC_030536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047975-exon-scaffold_139-1491911889:755433..755600TCONS_00047975-exon-scaffold_139-1491911889:755433..755600Clytia hemisphaericaexon
TCONS_00047975-exon-scaffold_139-1510915933:755433..755600TCONS_00047975-exon-scaffold_139-1510915933:755433..755600Clytia hemisphaericaexon
TCONS_00047975-exon-scaffold_139-1575043694:755433..755600TCONS_00047975-exon-scaffold_139-1575043694:755433..755600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:755433..755600 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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