TCONS_00047979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047979
Unique NameTCONS_00047979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047979 ID=TCONS_00047979|Name=TCONS_00047979|organism=Clytia hemisphaerica|type=transcript|length=649bp
TTTTGGAAAGAGTTCACTCTTCTCAAGATCTTCGTACGGCAGATTACTAC
AAGCAAATGGACGTGCTCCCAGGTCCAAAAACACAAAAGGCCTTGTTCGA
TGATTACACGATTCTCGTGAAATAATCGTGAAATACCTTCCTgcatttga
tattttcaaaaagtgtttcCCAAAGCACATAGAACACGCTTTTACGAAGG
AGATGTCAAAGAAATCTGAAGTTGAATCACTTGGATTGCTATTCAAATGC
GAAACGAAGACATCCGAAATGATCCAGATATTAGAAAATCTGCAAGAAAA
TTATGTCCCCAAAAGTGAAAAAGACGAGAAAGGCTTATGTGACACGTTTG
TTGACATCCCATTTGGAGGCGACCAGTTAACAGAGGAGAGAGCAGTCAAC
TCTCAGAAGGCACGTCTAGATGGAGAaaatgatttggaaaaattgaaagg
ATTGTCCCCTAAGTTTGAAGATTGGCATGCTAAAAAATGTCTTTACGAGG
TGAAGGATGGTGTGTTTCGTGATAAAGGCTCTGGAAATGAAGCTGGTACG
ACGGCGTGGGCTTTAAACTTTTTACACAAAACGAACGCAAAACCTGGCCC
AGACAAAGCATTCAATCACTATAAAGATTTTACTGATGTTGAGTTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00047979-protein

>TCONS_00047979-protein ID=TCONS_00047979-protein|Name=TCONS_00047979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MSKKSEVESLGLLFKCETKTSEMIQILENLQENYVPKSEKDEKGLCDTFV
DIPFGGDQLTEERAVNSQKARLDGENDLEKLKGLSPKFEDWHAKKCLYEV
KDGVFRDKGSGNEAGTTAWALNFLHKTNAKPGPDKAFNHYKDFTDVELD
Run BLAST on NCBI

transcript from alignment at scaffold_14:217979..219091+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047979 ID=TCONS_00047979|Name=TCONS_00047979|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at scaffold_14:217979..219091+ (Clytia hemisphaerica)
TTTTGGAAAGAGTTCACTCTTCTCAAGGTAAAGAAACTATAGTAATTATA
CTATTTTTACCAATATAAAATATGCCAGGTATTGGCGTGTTACAAACGAT
AAATAAAGATGGTAGACATATTAGGATTATTTTCTGAAATAAATTCTGGC
TATATTGATATAAATACCCAAAATAATAGGAATTGTTTTACGTACTTTAG
ATCTTCGTACGGCAGATTACTACAAGCAAATGGACGTGCTCCCAGGTCCA
AAAACACAAAAGGCCTTGTTCGATGATTACACGATTCTCGTGAAATAATC
GTGAAATACCTTCCTgcatttgatattttcaaaaagtgtttcCCAAAGCA
CATAGAACACGCTTTTACGAAGGAGATGTCAAAGAAATCTGAAGTTGTAA
GTAATACTTGATACTTTAAATTAAGAATACATTTCTTTATCCCCCATTGA
AATCTAGACAagcaaattaaaaataaatctaGTTATTACATCCCTTGTAG
GAGCTCTAGGTctaaaataccgtttttttaAATGTAATCTAATATAATCA
ACTTTAATTTTAGGAATCACTTGGATTGCTATTCAAATGCGAAACGAAGA
CATCCGAAATGATCCAGATATTAGAAAATCTGCAAGAAAATTATGTCCCC
AAAAGTGAAAAAGACGAGAAAGGCTTATGTGACACGTTTGTTGACATCCC
ATTTGGAGGCGACCAGTTAACAGAGGAGAGAGCAGTCAACTCTCAGAAGG
CACGTCTAGATGGAGAaaatgatttggaaaaattgaaaggATTGTCCCCT
AAGTTTGAAGATTGGCATGCTAAAAAATGTCTTTACGAGGTAAAAAAACT
ACTCTCTAACATACATACtatctaaaaaaaattctaaaaacagaaATATT
TTAATCAGACATATGATAAATAAGTATTTAAAAATGTCAGAAATTTGTAT
CTTGTATTACTAGGTGAAGGATGGTGTGTTTCGTGATAAAGGCTCTGGAA
ATGAAGCTGGTACGACGGCGTGGGCTTTAAACTTTTTACACAAAACGAAC
GCAAAACCTGGCCCAGACAAAGCATTCAATCACTATAAAGATTTTACTGA
TGTTGAGTTAGAT

Coding sequence (CDS) from alignment at scaffold_14:217979..219091+

>TCONS_00047979 ID=TCONS_00047979|Name=TCONS_00047979|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_14:217979..219091+ (Clytia hemisphaerica)
ATGTCAAAGAAATCTGAAGTTGAATCACTTGGATTGCTATTCAAATGCGA
AACGAAGACATCCGAAATGATCCAGATATTAGAAAATCTGCAAGAAAATT
ATGTCCCCAAAAGTGAAAAAGACGAGAAAGGCTTATGTGACACGTTTGTT
GACATCCCATTTGGAGGCGACCAGTTAACAGAGGAGAGAGCAGTCAACTC
TCAGAAGGCACGTCTAGATGGAGAaaatgatttggaaaaattgaaaggAT
TGTCCCCTAAGTTTGAAGATTGGCATGCTAAAAAATGTCTTTACGAGGTG
AAGGATGGTGTGTTTCGTGATAAAGGCTCTGGAAATGAAGCTGGTACGAC
GGCGTGGGCTTTAAACTTTTTACACAAAACGAACGCAAAACCTGGCCCAG
ACAAAGCATTCAATCACTATAAAGATTTTACTGATGTTGAGTTAGATATG
TCAAAGAAATCTGAAGTTGAATCACTTGGATTGCTATTCAAATGCGAAAC
GAAGACATCCGAAATGATCCAGATATTAGAAAATCTGCAAGAAAATTATG
TCCCCAAAAGTGAAAAAGACGAGAAAGGCTTATGTGACACGTTTGTTGAC
ATCCCATTTGGAGGCGACCAGTTAACAGAGGAGAGAGCAGTCAACTCTCA
GAAGGCACGTCTAGATGGAGAaaatgatttggaaaaattgaaaggATTGT
CCCCTAAGTTTGAAGATTGGCATGCTAAAAAATGTCTTTACGAGGTGAAG
GATGGTGTGTTTCGTGATAAAGGCTCTGGAAATGAAGCTGGTACGACGGC
GTGGGCTTTAAACTTTTTACACAAAACGAACGCAAAACCTGGCCCAGACA
AAGCATTCAATCACTATAAAGATTTTACTGATGTTGAGTTAGATATGTCA
AAGAAATCTGAAGTTGAATCACTTGGATTGCTATTCAAATGCGAAACGAA
GACATCCGAAATGATCCAGATATTAGAAAATCTGCAAGAAAATTATGTCC
CCAAAAGTGAAAAAGACGAGAAAGGCTTATGTGACACGTTTGTTGACATC
CCATTTGGAGGCGACCAGTTAACAGAGGAGAGAGCAGTCAACTCTCAGAA
GGCACGTCTAGATGGAGAaaatgatttggaaaaattgaaaggATTGTCCC
CTAAGTTTGAAGATTGGCATGCTAAAAAATGTCTTTACGAGGTGAAGGAT
GGTGTGTTTCGTGATAAAGGCTCTGGAAATGAAGCTGGTACGACGGCGTG
GGCTTTAAACTTTTTACACAAAACGAACGCAAAACCTGGCCCAGACAAAG
CATTCAATCACTATAAAGATTTTACTGATGTTGAGTTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030540XLOC_030540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047979-exon-scaffold_14-1491911889:217979..218005TCONS_00047979-exon-scaffold_14-1491911889:217979..218005Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1510915933:217979..218005TCONS_00047979-exon-scaffold_14-1510915933:217979..218005Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1575043694:217979..218005TCONS_00047979-exon-scaffold_14-1575043694:217979..218005Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1491911889:218179..218374TCONS_00047979-exon-scaffold_14-1491911889:218179..218374Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1510915933:218179..218374TCONS_00047979-exon-scaffold_14-1510915933:218179..218374Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1575043694:218179..218374TCONS_00047979-exon-scaffold_14-1575043694:218179..218374Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1491911889:218542..218817TCONS_00047979-exon-scaffold_14-1491911889:218542..218817Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1510915933:218542..218817TCONS_00047979-exon-scaffold_14-1510915933:218542..218817Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1575043694:218542..218817TCONS_00047979-exon-scaffold_14-1575043694:218542..218817Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1491911889:218942..219091TCONS_00047979-exon-scaffold_14-1491911889:218942..219091Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1510915933:218942..219091TCONS_00047979-exon-scaffold_14-1510915933:218942..219091Clytia hemisphaericaexon
TCONS_00047979-exon-scaffold_14-1575043694:218942..219091TCONS_00047979-exon-scaffold_14-1575043694:218942..219091Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047979-proteinTCONS_00047979-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:217979..219091 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.135698	0.0536253	0.13308	0	0.00362043	0	0	0	0	0.0779589	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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