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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048006 ID=TCONS_00048006|Name=TCONS_00048006|organism=Clytia hemisphaerica|type=transcript|length=1852bp
AAAGATTTTGAATGaataaaagcaaaaagtattttCCGATGGATGGATCC
AGCAATTTTTTtagtcatctcaaaagtaattTCTGCCACCTTAACCCCTA
TTCTTTAACGCTTaatcaatatttcattttctcttttttctcatcAGACA
GTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAACGC
GTTCACATTGATAAACAAAATGGTATCCTGATCTACAGAGTGCCAAAACA
CGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAAcagtttttatt
caaattctcgGTAAATGAAAGACTAGTAAACcccgtcgttgtatttcgct
gcataTCAAACTTGCAATTGGCTCTATGTCTATATGTTCACTAGATACAA
TATGtctttccaaaccactctccctcggcaatttctattttctataagaa
ctctttattataagaagcactattcccgcgttcctgtgtccaaagAAAGA
CATacgcttgctagtctaggtAAAAGTGAGTGCTCGATTGTTTGTAAACT
AACCATAACATTTCTGCATTTCCTTCCCCTTAGAAATTGAGCGTGATCAG
GATTTTTGTGGACAAGAAATGTTACGTCTCAAAAATGTCCCAAGATGAAC
CAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGCCGGTGGTGTATTC
GACTTCAGAAAATACTGGATTGAAACAGAAGAAATTGTTCCTATCGGTCA
TTCCAACAAATTGAACCTTTCacccgccattttgaatttctgtGGAAGTT
TTGATATCATGGACACTGTGGAAAGTACGGACCAAATGGAACAAGCCCTC
AAACAAAAAGCTATCGctGACTTCACAAACGGGAAAAGTAAacgattgat
tgtcaataacTACGTTTACTGCAAAAATGATGGCGCACAGATGACCGCAG
AAATGGTGAGATGTAATAACCGATGGGATAACCTCGAGTTCAGATGCAAA
GTTGTCATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGCAAGCTGG
TTCAGGGTATAATTGCCCTGGAGTTCACAAATACCATCATATTAACTGCT
GTTCCCTCAAATGCAAACTCTAAAGAAACAGCTATctttcttttctaaaa
aaataggCCGGTTTCAAAGATATCCGTGAACAGTTTTAACTTCTTGGTAC
AACATTCACAAATGCCTTTGTCAGCTTCTTCTCACCATAAGTGAACTTCA
GTGGCCCCTCAAttcatcacgcaatcacgcaattttctttcgaaattcac
gcatttacgcaaattatttttcaattctcatgcattcacgcaaccgcaaa
aagcccattcacgcaaaccgctgggggcctggATTGAATGTCCTTTTCTT
CATACTCTTTCTTATTCTTGTTGgtatttgatttttatttctttaccCTG
CAATCATGATCGAAATCTTTTGAGAATTCAGCTTATTTCCGCGAGAATAT
caattttgggccatctctcaaatttaatcggatattttatttcaatttgg
ctcgggtttataggcctccaggctatattatgagccttattggaccactt
tttaacttttggatcctcaggtCCTAATTGtattaagtctcatgttaaaa
ctcagagttaaaactctacccttccaatctactttagagcacttacaaat
cgattgtggtttcaaaacttcctggtggatttcccttttttctcaaatat
tacgaccatgattgtggtTGGTGTAAGTCTGTTAAGTTTTTTAAGATATT
GTCTTGAATTCttctttgataatttttaacGCGTTCCGGTTTCCATATCT
TA Run BLAST on NCBI transcript from alignment at scaffold_14:590514..593450+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048006 ID=TCONS_00048006|Name=TCONS_00048006|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at scaffold_14:590514..593450+ (Clytia hemisphaerica)
AAAGATTTTGAATGaataaaagcaaaaagtattttCCGATGGATGGATCC
AGCAATTTTTTtagtcatctcaaaagtaattTCTGCCACCTTAACCCCTA
TTCTTTAACGCTTaatcaatatttcattttctcttttttctcatcAGACA
GTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAACGC
GTTCACATTGATAAACAAAATGGTATCCTGATCTACAGAGTGCCAAAACA
CGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAAcagtttttatt
caaattctcgGTAAATGAAAGACTAGTAAACcccgtcgttgtatttcgct
gcataTCAAACTTGCAATTGGCTCTATGTCTATATGTTCACTAGATACAA
TATGtctttccaaaccactctccctcggcaatttctattttctataagaa
ctctttattataagaagcactattcccgcgttcctgtgtccaaagAAAGA
CATacgcttgctagtctaggtAAAAGTGAGTGCTCGATTGTTTGTAAACT
AACCATAACATTTCTGCATTTCCTTCCCCTTAGAAATTGAGCGTGATCAG
GATTTTTGTGGACAAGAAATGTTACGTCTCAAAAATGTCCCAAGATGAAC
CAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGTTAGTAACATTTAA
AAAGTGCACTAACTTTATGAGTTCTCTGAATCAACTCATAATATAAATTA
GAAGCTTCAGACTTTAGACTTGATACAATCTTAACCGTTTGTGCTTCTAA
ATATAATCCCACTCACGTACATAGAAAATTATCTGGTATGGAAagtcaaa
gtaaaaaaaaatctttcaaagttACATATCATCTTTATTTCACTACAAGG
CCGGTGGTGTATTCGACTTCANaaaaaatctttcaaagttACATATCATC
TTTATTTCACTACCAGGCCGGTGGTGTATTCGACTTCAGAAAATACTGGA
TTGAAACAGAAGAAATTGTTCCTATCGGTCATTCCAACAAATTGAACCTT
TCacccgccattttgaatttctgtGGAAGTTTTGATATCATGGACACTGT
GGAAAGTACGGACCAAATGGAACAAGCCCTCAAACAAAAAGCTATCGGTA
AGAGGAACACTAAATAGTTTATTTATAAATTACTGTATTCCTGTGAAATG
CAATGCACGGATCACTGGATAATCATTGATAGAAAATGACCCTGATAATA
AATCGCTTCTTACACAATCAGCATataaatatattgagaattttgcttat
ttcctcgtttttcgaaatttcgaaaaagtcttATTTAGGCTATTTGTTAA
ATGTAATCGAATATTCAATTCGGGAGGGTTTTATGGGCTTTCAGGAccat
attctgagccttattagaccattcttgaacttttggatcctcagatccta
aggtcctaagtctagcgttaaaaatCAGAGTTTAAACTTTACCCCTCCAA
CTTAACTtcttagagcgcttccaaatcgtttgtggctatcagatttcgtg
ggaattccccttttttctgaaatacAAATTGTGACCTTGATTGTAATCTA
ATATAGTAGAGTTTCTtcaactcaaatgtctccttaactcgaacaaattt
tctcgttccttcagttaacaatgccttataaacctttccTCCATAACTCG
AGCAAATTTGTGTAGTTCCCCGTGTGGCCGTGTTCGAGTTtcagagactc
cactgtatttatCCCACAGCTGCCTCGGTGACCTAGTGTTTTTTTCTCGC
TCTATTCAGTTTTGGCTCCCTCAGGTAAATGAAACGGAGTTCTACTTAAT
ACTCGACTGGaatattttaacaattttgactTTACTGTAGGCCCTTAGTT
TAAACAACTATTTAGCAAAGTTTTCAGCagtattttctttgaaattttta
gctGACTTCACAAACGGGAAAAGTAAacgattgattgtcaataacTACGT
TTACTGCAAAAATGATGGCGCACAGATGACCGCAGAAATGGTGAGATGTA
ATAACCGATGGGATAACCTCGAGTTCAGATGCAAAGTTGTCATTCAAGGC
TTGTGTACATACCGTGTTACATGCAAGCAAGCTGGTTCAGGGTATAATTG
CCCTGGAGTTCACAAATACCATCATATTAACTGCTGTTCCCTCAAATGCA
AACTCTAAAGAAACAGCTATctttcttttctaaaaaaataggCCGGTTTC
AAAGATATCCGTGAACAGTTTTAACTTCTTGGTACAACATTCACAAATGC
CTTTGTCAGCTTCTTCTCACCATAAGTGAACTTCAGTGGCCCCTCAAttc
atcacgcaatcacgcaattttctttcgaaattcacgcatttacgcaaatt
atttttcaattctcatgcattcacgcaaccgcaaaaagcccattcacgca
aaccgctgggggcctggATTGAATGTCCTTTTCTTCATACTCTTTCTTAT
TCTTGTTGgtatttgatttttatttctttaccCTGCAATCATGATCGAAA
TCTTTTGAGAATTCAGCTTATTTCCGCGAGAATATcaattttgggccatc
tctcaaatttaatcggatattttatttcaatttggctcgggtttataggc
ctccaggctatattatgagccttattggaccactttttaacttttggatc
ctcaggtCCTAATTGtattaagtctcatgttaaaactcagagttaaaact
ctacccttccaatctactttagagcacttacaaatcgattgtggtttcaa
aacttcctggtggatttcccttttttctcaaatattacgaccatgattgt
ggtTGGTGTAAGTCTGTTAAGTTTTTTAAGATATTGTCTTGAATTCttct
ttgataatttttaacGCGTTCCGGTTTCCATATCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048006-exon-scaffold_14-1491911889:590514..591198 | TCONS_00048006-exon-scaffold_14-1491911889:590514..591198 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1510915933:590514..591198 | TCONS_00048006-exon-scaffold_14-1510915933:590514..591198 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1575043694:590514..591198 | TCONS_00048006-exon-scaffold_14-1575043694:590514..591198 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1491911889:591480..591660 | TCONS_00048006-exon-scaffold_14-1491911889:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1510915933:591480..591660 | TCONS_00048006-exon-scaffold_14-1510915933:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1575043694:591480..591660 | TCONS_00048006-exon-scaffold_14-1575043694:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1491911889:592465..593450 | TCONS_00048006-exon-scaffold_14-1491911889:592465..593450 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1510915933:592465..593450 | TCONS_00048006-exon-scaffold_14-1510915933:592465..593450 | Clytia hemisphaerica | exon |
| TCONS_00048006-exon-scaffold_14-1575043694:592465..593450 | TCONS_00048006-exon-scaffold_14-1575043694:592465..593450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:590514..593450 + |
Blast
The following BLAST results are available for this feature:
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