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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048012 ID=TCONS_00048012|Name=TCONS_00048012|organism=Clytia hemisphaerica|type=transcript|length=238bp
aaaaaagataaaacataCTGCTCAAGGCCTTTCCTCTCTTTTCGTTTTTG
ATCTTCCCATCTCAGCAAACAGCTGCTACAAAATGGATGACGGCAGGGAA
GTTCAACACATTGTCTTATCAACTCTTGGCAAATCAAACACTGACAGCTT
GTTGgtatcAAACGGCAGGTCGAAGGGAGAAAACTCGAATCGAATTAACT
GGAAATGGAAAATCGGTCGATGTTTCAACATCAAAAAT Run BLAST on NCBI transcript from alignment at scaffold_14:663559..667995+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048012 ID=TCONS_00048012|Name=TCONS_00048012|organism=Clytia hemisphaerica|type=transcript|length=4437bp|location=Sequence derived from alignment at scaffold_14:663559..667995+ (Clytia hemisphaerica)
aaaaaagataaaacataCTGCTCAAGGCCTTTCCTCTCTTTTCGTTTTTG
ATCTTCCCATCTCAGCAAACAGCTGCTACAAAATGGATGACGGCAGGGAA
GTTCAACACATTGTCTTATCAACTCTTGGCAAATCAAACACTGACAGCTT
GTTGGTAATTtcccttttgttttaaattcatAACCACCTGATTCTTCGCC
GGCCATTTTATGTCCgcaaaaacaaacttgtaataAATCAACTAAATTTT
TATCATCAATATTGTCAAATCTGCTGGTTTAAATCACCTTTTTCGAATGT
CTACAACAatttggaattttgaaaattcaaaaaaacggAGGCATATTTAT
TAATCAACTGCCCATTTTTGACCACACTTTCTAAGTCTTTTCTAATTATA
ATTAAACTCCAACTTCAGTGGTATGTGAAACCACGATTCTTTGCCAATTA
ACTCAATCAATAAattctaaattctaaaaagtcCATGGACTTATTTGCTT
GAATTTTTTACAGAAGTAAAGCAAGAAAGAATTTAAAGGTGAGTGTGTCC
ATAATATAAACTAATAAAAAGAGAAAGTGTGAGATAAAGTCGATAAAATA
TTCTTGATTAAGAAAAGGAATATAAAAAGTCtttaattagcctccgtctc
agaacgcggtcagaaaattttgcggataatttcacagcgaaaatgcatcc
agtgaaatgtgagtaatgtatcatgattcaagtcgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttcatcagtagtacacaca
gtagtatttttttcagtaatcttttcttgtaaatatagtaacatttaacc
agcaGACTCATtgcaatttgtatttttttaggactgataagtacatattt
ttagacaccaaaacaaagcaaacaacatgccagttcttccTGGACAAATA
CATATGtatatactttattgtgtgctttgagttctattctatagaatcaa
ccctctcaactgctgatctttcaactatcatttaagagtatagaatgggc
ttccatagtaccattttctctaagtattttgtgcaaattttcaacaaagt
agacttcttgactgtccttgtccatTATGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGAAATCATAcaaatct
gaaactattaggcctttatgaactttctagaacaataatcttgctccaat
cttgagaaacactgggaaaataggttagcattccttGTCATAAtgtcaca
gatttcctctgctttctgcttgaaaacgctgtcgcatagccgaaaacgaa
agtgaaactgtgaaaacgtccgcaaattcaggcccagtcctcttccgaga
cggaggctaattagaGACAAAAAAGCTATTAAAGATAATTAGGCTTTAGC
ATGACATCCTGTTGAGATACTGTACAgtgtgtccctaattaaagtatcga
gtcgaaacgcAACTATGAGTAGAATGTTTTATGTGCGTgctcacaaaatt
gtattttaagctctccctcttttttctttgacattacgattaatttatat
gTTGTAattaccttttgtaataagcctgtgtgatggagaacgttcttata
ttttagcgataacacacacaaacttttctactcaatcgcatgttcgaact
cgatactttaattagggacaccctgtattacTCTTCCATATTCGTTAGAG
GTAatagcattgagtttaaagcccgaatggctagagttcaatctctaacc
tttctcaggcaagaaaaagtgttgccttaaaaatgcgccgcatttttgac
gacagattgaatcgagcaatttctttgtttacgattgatatttttttcga
aatttagcggtaaattttagtttcaatccgtcatttgtgtaaaaaacagg
cgagccgctcaaggccgcgcaactttggtaggatttgttggcttcaaatc
ctaccaaggagattcgattctagcccttcgggcttatactccATTGGGTA
ATAGACCACTAACTGTGGTGTGGAAGCTTCGTACCTAGAACAAAAATATT
CCGAACATCAAAAAGACTTAAGATTCaaacgttcttttataagaacttcc
AAAGTCTTCCGATGCTCTTTTAAAGCGGTTTGAGTTTCAagcttaaaaaa
tgttcttataatgttcttattttcaccaatttgtgAGTATTCTTGTACGA
ATTCttaagaaatcgagtgttttagtAGTTTTAGAGTTCGCAAAGCCTCA
AGATGTGCTTATgtaacttgttcttattattctggccatcgaagccttat
gttcttatatagtttgctcttataaaagtTTCCGTATAGAaggtagacta
gagtctacttttggctgaactttgctttttgataattttttatgacgctg
agtccagtgaagtagactaggagcatttggcgaggtcgccNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaaaacattgcttcatactgtttttacctNNATAG
AAGGGCAAAAGCGTTACAGAATACAACTATTAACTTCTCGGCAATGATTG
CTTCAGATCACGAACCAAACAGAACCAAAGAAaactatttacaaaattta
gaaTTCATAATTTTTCTGTTCTTTGATAAAAGAAGTGACATAAAAATGCT
GATGCAAGAATTTGGTgaaaccttcaaaatttatttacaaaatttttttt
caggtatcAAACGGCAGGTCGAAGGGAGAAAACTCGAATCGAATTAACTG
GAAATGGAAAATCGGTCGATGTTTCAACATCAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048012-exon-scaffold_14-1491911889:663559..663712 | TCONS_00048012-exon-scaffold_14-1491911889:663559..663712 | Clytia hemisphaerica | exon |
| TCONS_00048012-exon-scaffold_14-1510915933:663559..663712 | TCONS_00048012-exon-scaffold_14-1510915933:663559..663712 | Clytia hemisphaerica | exon |
| TCONS_00048012-exon-scaffold_14-1575043694:663559..663712 | TCONS_00048012-exon-scaffold_14-1575043694:663559..663712 | Clytia hemisphaerica | exon |
| TCONS_00048012-exon-scaffold_14-1491911889:667912..667995 | TCONS_00048012-exon-scaffold_14-1491911889:667912..667995 | Clytia hemisphaerica | exon |
| TCONS_00048012-exon-scaffold_14-1510915933:667912..667995 | TCONS_00048012-exon-scaffold_14-1510915933:667912..667995 | Clytia hemisphaerica | exon |
| TCONS_00048012-exon-scaffold_14-1575043694:667912..667995 | TCONS_00048012-exon-scaffold_14-1575043694:667912..667995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:663559..667995 + |
Blast
The following BLAST results are available for this feature:
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