TCONS_00048025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048025
Unique NameTCONS_00048025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048025 ID=TCONS_00048025|Name=TCONS_00048025|organism=Clytia hemisphaerica|type=transcript|length=1601bp
TAAGAAGTCATTGTAAAGCTACTCAACTTTTCTGACGTCAATTAAATTAT
GAAGTCATTATAGTGCTCCCAACTATTTAAGTCAATCTTTCCAACGGTTT
TTTTCATTCTACACTTCAATTTTGTTGCGTGCAGACTTACGTTACGACGG
AGAGGAGAACAACATGGCTAAACGCGCTGCAATCAATGCAATATCAGACG
ATGTTTGGGCTGATTTATATGCTCGATTAATCAATTCAAATGAGGAAAAT
GAAATCTCTTTAAACTTAATCAACAATCGTGTGTCAAAGTTTATATCGCT
ATTTGCGAACAAACATGGTTTTAacgcttctttttttattgcacCTATTT
tgacaacaataaattttttgttgtcACGAGTCGGATCAAAAGTCACTATC
CGTGATGGATTTGAAATGAATCTTAATACATATTGGTTGTTCGTTGGACA
ACCTACAAcaggtAAGTCCTCAGCAATCAAACATGTAATTACAGAACCTA
TACCAGATCCCGTAAAGTCTTCCTTGATATCAACAACCACTGGAAGTGGG
TTGGTAAAGCTGCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGA
GATTTCCGATTATTTCATGCGATTTGCAAAAAACGACGAGAACAGTAACG
GTAATTTTTTCGCATTAATTACATTAATCTTTCTAAAATTCTCTTCACAT
AATTACATATCAATTTTTTAGTTCCCTTCAAATTTGATGATATCTGAATT
TTACAAACCTGATtctaaaagatttaaaaagaacGCTAAAGGTATTGTAT
TTAATTCACATGTGAAATCGAAAATTTGTGCAAGCTCTATAGTGGCGAGT
CGATAACAATAAATTACGCCACCGAAGATCAACGAAGTATCAAAACTGAC
ATACCATTTTGCATTTTGGGGTCTACGCAGTTAAAGAATGCATCCATTAT
GTTGGCTACAATTGACCATAATGATGGGTTCTGGGATAGGTTTTTATTCA
GCGTTCCACCTCCATTCAGACCATGTCCTGATGATCAATTAAAAGCGACC
CAAACATTCAATCAAGAATTTCCATACACAATGAAAGATATATATGAAAA
ACTGGACAGTTTACTTGACGAAGAAAATCCCCCGATGTTTTATTTGGCAC
ATAATGCTGCAGAGTATGAATACAGATGTAATATTAGGAGCCAACAGAAA
AATGAGAACAGCAATTCcagtgaaaaattcaaaatttactgTCCAGATTC
TGAAAATTGCCGTTGCGCTGTAAGTTTTGGATACATTATTCTCTATCATG
GATAACAACAATCAAACATTGACAGAGGAAATAACTCTTGACAAAATCAT
CCATGAAAGGAATATAATCCACCATATAGCTGATCAAACATCAGTTCTCA
AAGAGTTCGTGAAATCTTCAATTCCAATCAAACAAATAGGCAATAGTTTT
GTTCCAACGAAGGAAAATCTTTGCAGAGTGATTCTGGCTTCTCCGGGTTC
AATCGTTACCCAAAGGTCAGTACGAATCTGCACCACCAAAACTTTCCGCC
AACATATAATGACGGCTGAATTCATTAATTGCTGCAAATATTTGATGTCG
G
Run BLAST on NCBI

protein sequence of TCONS_00048025-protein

>TCONS_00048025-protein ID=TCONS_00048025-protein|Name=TCONS_00048025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MAKRAAINAISDDVWADLYARLINSNEENEISLNLINNRVSKFISLFANK
HGFNASFFIAPILTTINFLLSRVGSKVTIRDGFEMNLNTYWLFVGQPTTG
KSSAIKHVITEPIPDPVKSSLISTTTGSGLVKLLSKKQQAYIVNSEISDY
FMRFAKNDENSNGNFFALITLIFLKFSSHNYISIF
Run BLAST on NCBI

transcript from alignment at scaffold_14:80140..84362-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048025 ID=TCONS_00048025|Name=TCONS_00048025|organism=Clytia hemisphaerica|type=transcript|length=4223bp|location=Sequence derived from alignment at scaffold_14:80140..84362- (Clytia hemisphaerica)
TAAGAAGTCATTGTAAAGCTACTCAACTTTTCTGACGTCAATTAAATTAT
GAAGTCATTATAGTGCTCCCAACTATTTAAGTCAATCTTTCCAACGGTTT
TTTTCATTCTACACTTCAATTTTGTTGCGTGCAGACTTACGTTACGACGG
AGAGGAGAACAACATGGCTAAACGCGCTGCAATCAATGCAATATCAGACG
ATGTTTGGGCTGATTTATATGCTCGATTAATCAATTCAAATGAGGAAAAT
GAAATCTCTTTAAACTTAATCAACAATCGTGTGTCAAAGTTTATATCGCT
ATTTGCGAACAAACATGGTTTTAACGCTTCTTTTTTTATTGCACCTATTT
TGACAACAATAAATTTTTTGTTGTCACGAGTCGGATCAAAAGTCACTATC
CGTGATGGATTTGAAATGAATCTTAATACATATTGGTTGTTCGTTGGACA
ACCTACAACAGGTAATTTTTCTTTTATTCTTGTTCTATTTGGATCTTTTA
CGATTTTATTCTATCTTAAAAATGTTTAACCTGTTTTCTCTCATTACGTT
TATTCCTGTGCATTCTTTTCAGATGATTATTTTTCTACTTTAAATATGTT
GTCTAATTAAAATAGTGAACATAGAGATGACGATAGCTATTTTTTATTAT
TTAGGTAAGTCCTCAGCAATCAAACATGTAATTACAGAACCTATACCAGA
TCCCGTAAAGTCTTCCTTGATATCAACAACCACTGGAAGTGGGTTGGTAA
AGCTGCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGAGATTTCC
GATTATTTCATGCGATTTGCAAAAAACGACGAGAACAGTAACGGTAATTT
TTTCGCATTAATTACATTAATCTTTCTAAAATTCTCTTCACATAATTACA
TATCAATTTTTTAGTTCCCTTCAAATTTGATGATATCTGAATTTTACAAA
CCTGATTCTAAAAGATTTAAAAAGAACGCTAAAGGTATTGTATTTAATTC
ACATGTGAAATCGAAAATTTGTGCAAGCTCTATAGTGGCGAGTCGATAAC
AATAAATTACGCCACCGAAGATCAACGAAGTATCAAAACTGACATACCAT
TTTGCATTTTGGGTAATTACTTGTTACATTTTAAATTTTATAGGAACTTC
CGAACTATTAGTTTTTGTATTTGTCCTATAATGTAATCTCAACATCGTTT
TTATCCCTTATATTTGATTTCTCCTTCTCCATTTTTTGTGCAATTTATAG
CTGCCTAATTCAAAATTTCACTTTGACTATTTCCACCCAAAATGCTTTCA
CTGTTTAGAATCACAACAGGGCAAAACTGTGAGTAATTAACAATGAAACA
TTAATTTTATACCATAGTGGGGAATGCCGATTACTTCATATATAAATAAA
GTCTTCTCTATTTCAGGGTCTACGCAGTTAAAGAATGCATCCATTATGTT
GGCTACAATTGACCATAATGATGGGTTCTGGGATAGGTTTTTATTCAGCG
TTCCACCTCCATTCAGACCATGTCCTGATGATCAATTAAAAGCGACCCAA
ACATTCAATCAAGAATTTCCATACACAATGAAAGATATATATGAAAAACT
GGACAGTTTACTTGACGAAGAAAATCCCCCGATGTTTTATTTGGCACATA
ATGCTGCAGAGTAAGTTCGGTTTCGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCAAACATTCAATCAAGAATTTCCA
TACACAATGAAAGATATATATGAAAAACTGGACAGTTTACTTGACGAAGA
AAATCCCCCGATGTTTTATTTGGCACATAATGCTGCAGAGTAAGTTCGGT
TTCATATATTTTAACTATCAACCATATCTGTTTTTCCATAGCATTTTGAA
AATATAATAACAACACAAACTCTTTTCCGTGCGCATGCAAATCACGAACC
TTCGAAACCTGTATTACCTACATTTAAAATAAAATTACGTCACAATATCT
TTTTCTTCTAACAGGTATGAATACAGATGTAATATTAGGAGCCAACAGAA
AAATGAGAACAGCAATTCCAGTGAAAAATTCAAAATTTACTGTCCAGATT
CTGAAAATTGCCGTTGCGCTGTAAGTTTTGGATACATTATTCTCTATCAT
GGATAACAACAATCAAACATTGACAGAGGAAATAACTCTTGACAAAATCA
TCCATGAAAGGAATATAATCCACCATATAGCTGATCAAACATCAGTTCTC
AAAGAGGTACAATTTTGATATTGACTTATTATGGCATCAATTCTAACCTT
GAAATCAAAGGTTCGAAGTACCTAGTCACTTTCCCAGTGCTAATGTCATA
CATGATTTGTTTTGGCCATGGTTTGGCGCGAATTAAACACTGAAAATTAA
TAGAATCAATCAATCAATTGCTTTATAAAACCACGGATGAGGGTTGCTTA
GAAATTTGTTTTATTGGAAGAGACTTACCTTCTTTTTCATATTATTACCA
ATGATTGTTTTCTTTTATTAATTTCAGTTCGTGAAATCTTCAATTCCAAT
CAAACAAATAGGCAATAGTTTTGTTCCAACGAAGGAAAATCTTTGCAGAG
TGATTCTGGCTTCTCCGGGTTCAATCGTTACCCAAAGGTCAGTACGAATC
TGCACCACCAAAACTTTCCGCCAACATATAATGACGGCTGAATTCATTAA
TTGCTGCAAATATTTGATGTCGG

Coding sequence (CDS) from alignment at scaffold_14:80140..84362-

>TCONS_00048025 ID=TCONS_00048025|Name=TCONS_00048025|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_14:80140..84362- (Clytia hemisphaerica)
GTAAGTCCTCAGCAATCAAACATGTAATTACAGAACCTATACCAGATCCC
GTAAAGTCTTCCTTGATATCAACAACCACTGGAAGTGGGTTGGTAAAGCT
GCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGAGATTTCCGATT
ATTTCATGCGATTTGCAAAAAACGACGAGAACAGTAACGGTAATTTTTTC
GCATTAATTACATTAATCTTTCTAAAATTCTCTTCACATAATTACATATC
AATTTTTTAGATGGCTAAACGCGCTGCAATCAATGCAATATCAGACGATG
TTTGGGCTGATTTATATGCTCGATTAATCAATTCAAATGAGGAAAATGAA
ATCTCTTTAAACTTAATCAACAATCGTGTGTCAAAGTTTATATCGCTATT
TGCGAACAAACATGGTTTTAACGCTTCTTTTTTTATTGCACCTATTTTGA
CAACAATAAATTTTTTGTTGTCACGAGTCGGATCAAAAGTCACTATCCGT
GATGGATTTGAAATGAATCTTAATACATATTGGTTGTTCGTTGGACAACC
TACAACAGGTAAGTCCTCAGCAATCAAACATGTAATTACAGAACCTATAC
CAGATCCCGTAAAGTCTTCCTTGATATCAACAACCACTGGAAGTGGGTTG
GTAAAGCTGCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGAGAT
TTCCGATTATTTCATGCGATTTGCAAAAAACGACGAGAACAGTAACGGTA
ATTTTTTCGCATTAATTACATTAATCTTTCTAAAATTCTCTTCACATAAT
TACATATCAATTTTTTAGATGGCTAAACGCGCTGCAATCAATGCAATATC
AGACGATGTTTGGGCTGATTTATATGCTCGATTAATCAATTCAAATGAGG
AAAATGAAATCTCTTTAAACTTAATCAACAATCGTGTGTCAAAGTTTATA
TCGCTATTTGCGAACAAACATGGTTTTAACGCTTCTTTTTTTATTGCACC
TATTTTGACAACAATAAATTTTTTGTTGTCACGAGTCGGATCAAAAGTCA
CTATCCGTGATGGATTTGAAATGAATCTTAATACATATTGGTTGTTCGTT
GGACAACCTACAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030557XLOC_030557Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048025-proteinTCONS_00048025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048025-exon-scaffold_14-1575043694:83902..84362TCONS_00048025-exon-scaffold_14-1575043694:83902..84362Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1575043694:83251..83708TCONS_00048025-exon-scaffold_14-1575043694:83251..83708Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1575043694:82703..82946TCONS_00048025-exon-scaffold_14-1575043694:82703..82946Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1575043694:80607..80848TCONS_00048025-exon-scaffold_14-1575043694:80607..80848Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1575043694:80140..80335TCONS_00048025-exon-scaffold_14-1575043694:80140..80335Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1510915933:83902..84362TCONS_00048025-exon-scaffold_14-1510915933:83902..84362Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1510915933:83251..83708TCONS_00048025-exon-scaffold_14-1510915933:83251..83708Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1510915933:82703..82946TCONS_00048025-exon-scaffold_14-1510915933:82703..82946Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1510915933:80607..80848TCONS_00048025-exon-scaffold_14-1510915933:80607..80848Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1510915933:80140..80335TCONS_00048025-exon-scaffold_14-1510915933:80140..80335Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1491911889:83902..84362TCONS_00048025-exon-scaffold_14-1491911889:83902..84362Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1491911889:83251..83708TCONS_00048025-exon-scaffold_14-1491911889:83251..83708Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1491911889:82703..82946TCONS_00048025-exon-scaffold_14-1491911889:82703..82946Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1491911889:80607..80848TCONS_00048025-exon-scaffold_14-1491911889:80607..80848Clytia hemisphaericaexon
TCONS_00048025-exon-scaffold_14-1491911889:80140..80335TCONS_00048025-exon-scaffold_14-1491911889:80140..80335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:80140..84362 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226934	0.0854588	0.0288576	0	0.398378	0.285597	0.34763	0.256551	0.313826	0.327518	0.294667	0.464347	0.249904	0.331648	0.331551	0.522861	0.246903	0.458363	0.350381	0.338238	0.154913	0.182898	0.292228	0.127339	0.31139	0.565527	0.0817735	0.160195	0.142902	0.0864644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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