TCONS_00048341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048341
Unique NameTCONS_00048341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048341 ID=TCONS_00048341|Name=TCONS_00048341|organism=Clytia hemisphaerica|type=transcript|length=968bp
taagGATAGTAACAGAAagtaaaataatataaaaacaaatgatGACATCG
ATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGATGT
ATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGGATGCAAGTGATGA
GGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGTTCGTGATGCTCGT
GTTCCATTATCCAGCTGCAACAAACAGTTCGAATATCTTTATGCGCACAA
ACCTCGAATTCTACTCATTAATAAAATCGATCTGGCTAATGAAAGTCTCA
CAAAGGTGATGAGATCTTTGAAACAAATTCTTCGccaaaagaatgaacaa
aaatctATAGCCGGTGGAAAGCCAATGAAGGCGTTGGATGACAGTTCTTT
TAAAGCACTTGTATGCGGTNTCAGGGTGGGAAGCAAATGAAGTCTTTGGA
TGACAGCTCTTTTAAAGCACTTGTATGCGGAGTTCCAAATGTTGGCAAAT
CTTCGTTTATTAATGCCGCAAGACAACGTTACTTGAGAAAAGGTGGTAAA
GCAACACCAGTTGGGCGGAAACCAGGCGTTACCAGATCTGTACTGACAAA
AATTGTGatatCGCGAAACCCAAAGATTTCCATCCTTGACACACCAGGTA
TTAAACTCATTCAATGAATGAATATCATTCCTTCAGATTCATTGAACGAT
GTTCAATATGGCACCACAATTCATTTAGCAATTAAATCGACGCCTTTACC
AGGGTTGAGAATCGCAATACTAATACGCTGCAGAGATTCTCGGACTGTTT
ATAAAAATACTTATACATTGAGTATTGAAAAGTTATCTAAATTTACAAAC
TTcatcatttttataatttttttcaaggtaTCATTTCGCCATACTTAAAA
GACCCGATGACTGGAATCAAATTGGCTTTAACGGGAACTTTTCCTGATCA
CGTAATAGGAGAAGAANC
Run BLAST on NCBI

transcript from alignment at scaffold_142:67010..72939-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048341 ID=TCONS_00048341|Name=TCONS_00048341|organism=Clytia hemisphaerica|type=transcript|length=5930bp|location=Sequence derived from alignment at scaffold_142:67010..72939- (Clytia hemisphaerica)
TAAGGATAGTAACAGAAAGTAAAATAATATAAAAACAAATGATGACATCG
ATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGATGT
ATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGTACTGTGGATATAT
AATTGTTTGTATGATATTTACATTGAGGAGTTTTTGCATCATTACATTCT
CCTTCTCAAAGCCGACGGCATAGATATTTAGATATATAGATAGTTGTTAC
ATTAACCGATGTTAATCATGAAAGAAAGCTATGTAAGTAAAGACAAAGGA
AGCTATACACCTTTTCGACCGTAGCCGCGCCAATTGCCGTGCGGGCAATT
TTTATCTGTTTCACCACCCTAAAACCGCCCCAGTCTTTTTTCCGCACCTA
AAGACAATAGAAAAAGTGTAAAAAGGGTTGGATCGAGTTTAGGGTGGTGA
ATTAAATAATAAAGTAGCACGCGCCTGACCAGGCGGCTACGGTTGAAAAA
GTGTATTGGGGCATAACGTGGAGCACATTCACTTTCACTGGGGAGTAGGC
TACCTTTAGTTATTATTTATAATTTACTTTTTTCTTGGTTGCCAGGGATG
CAAGTGATGAGGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGTTCG
TGATGCTCGTGTAAGTAAATTACTGTAGCGAGTTTATGTATCTGTGTTAT
CCCATTTGTCTATATCCTGATTAACTGAGGATGACGGTAAATCAGCACTT
TTACCGTCCTCCATTTTTTGGGTCAAAACTGCGGGTTATTCCAAATCGCT
ACAGATACGTCTTCAAAATCCGTCTTCAAAAATGCAAATATAAAAACCCG
CCGCTTGTGTTTTACCAACACAGTATATTAAGATCATCATATGGTGCTAA
TTTAGCATTAGAATTAAATGCGTTAATATATTATTAATATGTTCGTTGTT
AAGTCGCTGAAAGTGCTCCGTTTGGTGTAAAAGTATTTGAGATTTCGAAG
AGTTCTCCGGCGAAGCCTATTTTCCGAACACCATTTTAGTAGCAGTCTGT
TTTAGCGAGGAAAATTTAGCTTCCTTGTATTGCCCCTAGAAGGATCTCAG
ATTCCTCATCTGCAAGCAGGTAAAAAAGCGTAGAGGGTGTTTGAAAATAC
TCAACAGCCTGTAGTAATGTCAAAATCTTAATCTTCGAAAAACACCAGCA
AATTCAAACGATTTCTATTTCTACATTCCCATTCATCAGTTTATAGGATT
ATACATGCATTTTTTCTTTCGTGTTTAGGTTCCATTATCCAGCTGCAACA
AACAGTTCGAATATCTTTATGCGCACAAACCTCGAATTCTACTCATTAAT
AAAATCGATCTGGCTAATGAAAGTCTCACAAAGGTTAATAAATATCATTT
TAGAATGTCTGACAAGGGTTTTCGTCGTCGGTGCATGGGATTTTTAGGAT
CGCCTGTCAAGTGTGAAAGTTATTGGGGGTGATTGAAGAATTTTCCCTAC
GTAGGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAACATGGAGCTA
AGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCTGGGATGAGGC
TATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCATCAATCGCCT
ATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCNTCAAAAGTACAA
AGACTTTGCTCAAAAAAGATTTCTAAAACTTAAAAATCAAGTTTTTAACT
AATAGTTATGTTCTTAACAATTTTAACGATAAATTAACTTGAAAACCGGT
TTGACAACTTTTATAAGATTTTAGTTTAAAATGATAGACAAAAGATTTAA
TTGATGATTAATATTTAATTGATGATTACGGAGCCACTGAACTGTAGCAT
TGCTTAAAACTTCGATTTTCCTTTATGTTTTGAGGCTTGTTTTGAAAAGT
TATACTTTTGGAAAGCCTGAAAAATGCTCCATCTCACTGTGGAAGAATTT
TCAAAATTGANGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAACAT
GGAGCTAAGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCTGGG
ATGAGGCTATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCATCA
ATCGCCTATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCCCTCTT
CTGTCCCACTGTCCCACAGTTACAAACGAAATGATCACAGTATTCCTTTC
TCTATGTCATCAGTAGGATTTTATTTTTTGAACCTACTGGAGGTCCTATA
AATTAACCTGTTTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATC
AGAATTTTTTGATTTTTGGTACAAAGGTGCAAAATAGTGGTGGCCAAAAT
GCGACGGAGCCCGATTTTCGGAAAAAAAACTTTTAGTAAATTTCAGCCAA
AAAATGGCTAAAAATAGGGTTTTTGGACTTGTTTTGTTTTATTTTTTTTC
CTCAAGTACATGATTTTGCGAAATAATACCGGTGTAGCGGATTATTTTAA
CTCCCCGCAAATGTTGACCCCCCCAGTTAATATAAACTAGGAAATAATGA
CTCCCCTAGAGTAGAAATTTCCTAGGAAATATTGACTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGT
TTTTCAGATTTTAAACCTCTTGAGAATTGCTTTAAGATGCTAAATTTTGC
TAATTCGTTACTTTTCTCGTTCAAGGCTATGAAATAAGAATTTTTCGCAG
AGCTGATTTTCGTCGTTGACACCCACCTTTTGCCGAAATTCTTTCATTTT
TCAAGGGACTTTAAGAATTTTCAAAATGTATGGTATTCCGCTGAACAGAT
TTTTCACGTAATTGTCGGTAGACACGAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGAAGGAAATGCTTCCCTCAGATGGAGTATTTC
TCTTACGGGGGTCTGTAGAGTTAGCCCTGGATAGCCAAATGAATTTTTAA
ATAATTTTGTCATAGATGATAGAGGGGAGTCATTTTAAACCAAAGGGGGT
CAAGATTTCCTAGGAAATAGCAACTCTAGGGAGTCTTCATTTACTAGTTT
ATTATGACCGGGGAGTCATTATTTAGGGGAGTTAATTTTTTTTGTCACAC
CGGTAATGTAATCGTTTTTTACGTTACGGGAAAACCAAATGAAATGAATT
GGATGGACCTCATACTGTACTTTCATTTGTTTTCTAACGTTAGTGGTCGG
GGGGGGGGCACCTTAAGGTAAGTGACTCACCGCAGGTGCGCCTTCTAGGG
TACGGTATCAGGCTTCAAGTGCGTCAGGAGGTCAAAACCAAAATCCACAG
AATCGAGTTCGACACTAATAAACTGTAACTTTTCTTTTACTGATGTTTCT
TTTCAGGAAGTTTGTGAGCAAAATTTGTCTCAAGAAAACATAGTCCAAAC
GTTTTACACCAATTGCAAAACGAAAGAAAAAGAAATCTTCACAGAGGTTT
TTAAGTTGTCATTTTATGATTCCAGTCCATGAAAAATCGAAATGTAATAA
CCGCATTCTTTTTCGCCGTTCAACATATGAGTTCAGTCCATTTAATAAGT
GGGTCTTTCTCTATTTGTCTTCTCTACATCATGACATTGTTGATCGCAGC
ACAATTGGTTGCACAGTCTACTGTGGTGCCAATGTAACATTTTATTTGTA
AAAATCTCAGCCCACCAGTGAACCACATTAAAGCTTATGATTCTTTGTCA
ATTATGTCAACGATTAATTCATTTAGGTGATGAGATCTTTGAAACAAATT
CTTCGCCAAAAGAATGAACAAAAATCTATAGCCGTAAGTTCGTTACGTAA
ATTTTTTACGCAACAGCTTCGATATTCCGGTCACAAAATAATATTGAAAA
TGAATTATTCCTTTTTGGTTATTTATGACTTTTTCCGTAACCTTTAGATA
CAGTAGAGTGTAACACAAAGATCTACGGAAAACACAAACTTGCTTGCTTT
ATTGATAGTTCAAGTTATGGAAGCAAATGGTTCGTTAACTGGTGATCGAG
TAATCGAATTTCTGAAATATTTTCATTTTAACTTCATTTTTCAGGGTGGA
AAGCCAATGAAGGCGTTGGATGACAGTTCTTTTAAAGCACTTGTATGCGG
TNTCAGGGTGGGAAGCAAATGAAGTCTTTGGATGACAGCTCTTTTAAAGC
ACTTGTATGCGGAGTTCCAAATGTTGGCAAATCTTCGTTTATTAATGCCG
CAAGACAACGTTACTTGAGAAAAGGTAAATTGAGAACAAACTTTACACGT
TTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCT
AAAAACTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGT
CAAAAAGTTTGGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGATT
TCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAACA
ATGTGTAATCCAAGGCAATTTCAATTTGTGCTACCTACATTCTGAAAGGA
ATTCATGTAATGAATACTAATCTCTGTTGCTTTTTGAATTTCAAGGCTTA
CAGTTTTTGACAAATCTCTCCTTCCATAAACTTTTCATAGGTGGTAAAGC
AACACCAGTTGGGCGGAAACCAGGCGTTACCAGATCTGTACTGACAAAAA
TTGTGGTAAGTATTTCATCTTACGATATGTCTTTATGGTTTCTGTTTTTG
CTAGATAAATATTTTTTTATTCCAGGCATCAAGGACTTAAAAAGTTTCAT
AAATCATTCTGGATACGGCAATTTTTAGTCCAATTTTCTTTTTCAGATAT
CGCGAAACCCAAAGATTTCCATCCTTGACACACCAGGTATTAAACTCATT
CAATGAATGAATATCATTCCTTCAGATTCATTGAACGATGTTCAATATGG
CACCACAATTCATTTAGCAATTAAATCGACGCCTTTACCAGGGTTGAGAA
TCGCAATACTAATACGCTGCAGAGATTCTCGGACTGTTTATAAAAATACT
TATACATTGAGTATTGAAAAGTTATCTAAATTTACAAACTTCATCATTTT
TATAATTTTTTTCAAGGTATCATTTCGCCATACTTAAAAGACCCGATGAC
TGGAATCAAATTGGCTTTAACGGGTATTTGAATTATTTGTGAAAGAAACT
GTGGACAATATTCTTTTTATGTATTAGATGGTGTCTATTTCTCCATTCGA
CAATAAGGCACTGAATATATTGTACAAATGACTTTAAATTTTACAACACA
GTGCTCAATACCGAGATTGACAGAGCGGACACTGGATATATATGACTACC
TAATAATCTTACGAGGATTGTTTTTAATTCTCCTCGACTTTTTTAGGAAC
TTTTCCTGATCACGTAATAGGAGAAGAANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030761XLOC_030761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048341-exon-scaffold_142-1575043694:72805..72939TCONS_00048341-exon-scaffold_142-1575043694:72805..72939Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:72280..72344TCONS_00048341-exon-scaffold_142-1575043694:72280..72344Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:71557..71661TCONS_00048341-exon-scaffold_142-1575043694:71557..71661Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:68807..68863TCONS_00048341-exon-scaffold_142-1575043694:68807..68863Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:68366..68545TCONS_00048341-exon-scaffold_142-1575043694:68366..68545Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:67735..67799TCONS_00048341-exon-scaffold_142-1575043694:67735..67799Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:67267..67593TCONS_00048341-exon-scaffold_142-1575043694:67267..67593Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1575043694:67010..67043TCONS_00048341-exon-scaffold_142-1575043694:67010..67043Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:72805..72939TCONS_00048341-exon-scaffold_142-1510915933:72805..72939Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:72280..72344TCONS_00048341-exon-scaffold_142-1510915933:72280..72344Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:71557..71661TCONS_00048341-exon-scaffold_142-1510915933:71557..71661Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:68807..68863TCONS_00048341-exon-scaffold_142-1510915933:68807..68863Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:68366..68545TCONS_00048341-exon-scaffold_142-1510915933:68366..68545Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:67735..67799TCONS_00048341-exon-scaffold_142-1510915933:67735..67799Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:67267..67593TCONS_00048341-exon-scaffold_142-1510915933:67267..67593Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1510915933:67010..67043TCONS_00048341-exon-scaffold_142-1510915933:67010..67043Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:72805..72939TCONS_00048341-exon-scaffold_142-1491911889:72805..72939Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:72280..72344TCONS_00048341-exon-scaffold_142-1491911889:72280..72344Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:71557..71661TCONS_00048341-exon-scaffold_142-1491911889:71557..71661Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:68807..68863TCONS_00048341-exon-scaffold_142-1491911889:68807..68863Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:68366..68545TCONS_00048341-exon-scaffold_142-1491911889:68366..68545Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:67735..67799TCONS_00048341-exon-scaffold_142-1491911889:67735..67799Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:67267..67593TCONS_00048341-exon-scaffold_142-1491911889:67267..67593Clytia hemisphaericaexon
TCONS_00048341-exon-scaffold_142-1491911889:67010..67043TCONS_00048341-exon-scaffold_142-1491911889:67010..67043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:67010..72939 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346567	0.700451	0	0	0.86776	0.0895735	0	0.377734	0	0.1159	0	0.0555219	0.066552	0	0.208535	0.179716	0.304809	0.419961	0.73824	0.157963	0.491385	0.719897	0	0.65438	0	0	0.16293	0	0	0.431666
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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