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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048348 ID=TCONS_00048348|Name=TCONS_00048348|organism=Clytia hemisphaerica|type=transcript|length=1792bp
CAACACAAACCAAACAACCACTGTGAATAGTATGTACATCCAAAGAAAGG
TTTAGAGAGGAAATAATAGAATGGAGCAAGACCACAGAAGTGCTGCATCG
TTGAGATATGACAGAGAGTCTGaacaagaagaaaatgaagtttttaTTCA
ACAGCCTGCTGAACCATGGAGAAATGCAATAGCATTTTGGTTACTTGGTC
TGTGTAACAATTTTGGCTATGTTGTTATGCTTAGTGCTGCTTACGACATT
TTAAAAGAACAGCAACATAAACAGTCAGATGATCCATCCGGTCATGAAAC
CTTCCACTGTAACCCAACCTCCACTGGTGTCGTCCTTATAGCTGATGTTT
TACCTGGTTTATTGATCAAACTGACTGCTCCATTCTACATGCAGAGAATC
AACTACCATGTGCGTGTTGGTttgtgtgtctttttatttgctGCAAGCTT
ATTTACAGTGGCTTATTCGTCATCAGTGGCAGTCAGTTTGTTTGGTGTCG
TGCTAGCAAGTATTAGTTCTTGTGTCGGGGAAATCACTTTTCTAGCTTTC
TCTTCATATTACACAAAAACTGtgatttcattttggtcatcTGGAACTGG
TATGGCAGGACTTGCTGGTTCACTGGCATATGCTGGCCTCACTCAAGCAG
GGTTGTCAAGTAGAGATACATTACTCTTGCTTCTGGTAGTTGCTGTTGTA
TGGATTATTGCGTTTTGGGTTATTTTGAAGCTGCCTAATCAATATAGACT
TTGCAGTAGAGCTAATTATAATAGTGATGAGAATGACCCTCTTATGAATG
AAGATGCTGCATCAGACCGTGTTTCTTACCTACCCATGTCGTCCaaattg
aaaatgatgattCCGCTATTAAAATTTATGATCCCGTTGTTTTTGGTATA
TCTAGCTGAGTATACTATCAACCAAGGCTTGTATGAATTGTTGTACTACG
ATACATGGCTTAGTCAACCAGAACAATACCGCTGGTACCAAGTAGATTAC
CAATTAGCTGTTTTTATTTCTCGCTCGTCAATTAAATTACTCCCAATCAA
GAAAATTATCATCCCAGTGATTGTCCAATGGTGTATTTTAATCACTCTTA
CTGTCGAAGCTACCAACCCATTTCTAAGATATATCTGGTTTGCTTTGGCA
ATAGTGTTTCTGGAAGGTTTATGTGGTGGTGCAGTATATGTCAATGCTTT
CACTTTGATATCTGACTCCTCTACAAGTGAAAACAGAGAATTCAGAATGG
GTGCCGCCAGCATGGCTGATTCGATCGGTATTACCCTGGCAGGAATTATT
GCAATACCTATACATAATGCTATTTGCGATTACAGAACTTAGTTCTTTAA
CATTTtattacagtggagtctccataactcgaacacgcacggggaacagt
AGAATTATGGAGTAAGGCTTATTAGGCACTGTAAACTGAATGGACCATGA
AACTTGTTTGAGTGagagagacattcgagttatggaggttcaaggctcga
aataacgatttcaagtgggtcggacaaaatgtccgatcagggttgcttta
gcttgaaaattatgatttttgggtcggacatgaagccatttgggtcggac
aatgtccgatgtccgaccgttatttcgagccctggaggttcgagttaaag
ataCTCCACTGTAATCTGCAGcaattgaaaattgataatatgggttttat
ctatatattaatagcggtagtctgtatgtcgttttgtaTGTTTGTCtgtt
atactttcgttttcgcacgcaatgtttttgttcttccaaaag Run BLAST on NCBI transcript from alignment at scaffold_142:132339..147064- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048348 ID=TCONS_00048348|Name=TCONS_00048348|organism=Clytia hemisphaerica|type=transcript|length=14726bp|location=Sequence derived from alignment at scaffold_142:132339..147064- (Clytia hemisphaerica)
CAACACAAACCAAACAACCACTGTGAATAGTATGTACATCCAAAGAAAGG
TTTAGGTGAGAAAGAATTTCCGAGTTTCTGTATATATTATGTCATTCAGG
TACAGGTCAGGTGAATTTCCAACATTTTTTATATTTGGCAATTTGGGGAG
GCGGGCTGTGCTGTACCGTACTAGACTAGGTTTGCGACGAGGCAGGTGAT
TATAATGGTACCGTGAGATCGGGTAACTTGCATCAGTGGAGGGAAACTTG
CATAGCCATCAAATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAA
TGAATACGCAGCTCTGCTCACAGCTCTGCTTTACTATTTTTCTTTGGTTT
AACACTTTGTATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGC
ATGTCCAGGCGGTGTCAATCGAACTGTTCGATTATCGAACTAATCGTACT
TATTCGAACCCTATCGAACGATAGCTGTTCGATTATACCGAACCCAATCG
AACACCTATCGAACCTGGAAAACTTTTGTAAAGTTCGATGACTGTTCGAT
TATACGATTATAGTTCGATCGCAGTTCGATGAATACGATTGGTTTGATTA
AATCGATTTATACCTTGCCGCCCAATTTTTTGTTTATATTCCAAGGGCGT
ATTGGCGGCCGCCCTCACGGGCTATTCTCGCGGGCCATCCTATAATGCTA
TATCTATCCCATCGAATGGGACAAGCTGGAGCTTTTAGTCGTTAATTTGT
AAAAAAAAAGATTTTAATTTTTATTACTTTCTTTTTAAAGAAAGTGTTGC
ATCTCTATTATTTCAAATGAGCAATAATGAGTGGTGCCTGTGTTTTGATT
AAACAACCTCGTAATTTTCTGAAAGGTAAAGAAAAGTAGAATCAATCCGA
CACAATCATCGAACCACATCAAACTTTCATCGAACCACATTGAACTTAAA
TCGAACTCATCGAACATCAATCTAACTTCATCGAACAAAGAACACTCATC
GAACTAAATCGAACTTATCAAGAAATTTTCGTAAAGTTCGATAGCTGTTT
GATCGGGTTTGGTAATCAAACAACTATCTTTCAATTTTGTTCGATAACGT
TTGATGGTTCGATAACGAAAATCCGTTCGATAGGGTTGGGTTGACACCGC
CTGGGCATGTTAGCCTCCACTGATGCAAGTTACCTGATGTCACGGTACCG
TGAGAGGTCCTAAAGCCGACAGCCCAGCCTAATTCCGACCCCCCAAATAA
CTGTTATGAAAAAAAATTCTATGTTTACAAACATTCCCTCTCCAAGTTGA
ACAATAAACTATTGCTAGAACTCTTGAAACAAAACAACTATCAAGATAGC
TATAATGTCAAGATGTCAATTAATGTAATTAAAAAGTGTGAGTTGTAAAA
ATAATTACCTTTTATTCTGGATCAGTTGCTCATGTTTAAAACGATACAGT
TTTGTAATAAAAGTGACTTGTGCGGGAAAATACGAAACAACTTGGACTGG
TTTCCATCAAGAAACAAACAGACTAAATTGTAAAAATGGCGCGAAGTTGA
AAAAAGGGTGGATGTGGTAGCGCTAATTTGAATAACAAACATCGAATCAA
TGAGGCGGCAACTATCAACGCCCTCTTTACCACCTATAAGTCCGGATGTT
TATTTACGGAAGGCCCGCAATCGGACAGCTCTTCATTTAAAGTGTACTCT
TTGACGACATATATTATCTTTACTAGAATAATAGGAGCAAGATGTCATGT
AATACATAATAATTGTTGTAATATACATTGTCTATTTGTATTCTTATAAT
ATAATGTAATATACGTCGTCTATATGTATCCTTACACAAAGTCCTAGCCC
CGCAATCAAGCCAAGTGCCAGTGTAAAGTAATAGAAACCAGGCTTGATTA
CGTAACGTTTCAAAATGAGCACGCTTGTACACAGACCTCTTTTATATTTT
CGACGTGCTTTGGAAAATCAAAACATCCCGTTACTTTTTATGATGATGTT
ACTACTGTTGTCATTTATGACGGTTGAAGGATCATAGAAAGACATTAATA
TATTCTTTTGATTTATATTTCTAGATCATTAACATTCAATAGAAATATTA
CTAAAACATATACATTGTTGGTATCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTACCTGGG
TAGTTAAAACTGGTAAAATTAGCAAATTTTAGCTATTTTTGTAATTCTTT
TAATTTTTTGGATGACTTTTCTGAAAAAATGTGAAAATTTTTATAACTTG
AAAAAATTTTCTGTTGGAAAGTTGTTTGCTGCAAACAAAAAATTCTCAAT
ATTTTTTGTCAATATAAAAAAGTCTTTTATTCTAAGGGCAAAACATTAAT
TTTTGCACAAAGTGAAAAATGTGTCACAGAAATAATAATTTTTTAGCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACCAAAAAATAGGTGGTCTCCATG
ACAAATTGTCCCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTTCC
AAGAGTCTGGGTGGTGGTATGTAAAAAATCGTAAAAATCCTTTTACTACT
CATATATGTCTGAAATTTTACTACCGACCCCCCCCCCTGAATCAGGTAGC
ATGATAACTTGTCGCACATTGATCTACGTTAGTCGGGACGTTAAGACTAT
GTATTTGTCATACGAAACAATGCTCTCTCTTGGCATAGTTAATCATGAGT
TTCCATCAGTTGGTCAGTTCATGAATCCCAGTACTCAACCGTCGAAACCA
GATGTTGACCAACCAATGTTAAGTGGCATATTCGAGACGAACGTTGAAGT
GATGTGTGATTGTATAAGAAGAACACCTTTCCCACCTCCCCCGACGAAAC
TTCCTTTTGAATGTACCGAGGAAAACATTCCTGAGATGCGTGACTGGTTG
CTCAAGACATTCGCTGGTTCAACCTTCAATACCTGTCCACATCAGCCACT
CCCTACCATGACCGGACCTCCAGTCGAAATTCATCTCAAAGAAGACGCCA
AACCTGTTGCTCGACACAAAGCGATCCCGGTACCCATTCATTGGCAAGAG
CAAGTACGTCAAGACCTCTTCCGTGATGAATCACTCGGTGTTATCGAACG
TGTCCCTTATGGTGAACCCTCGCAATGGTGTCATCGCATGGTGGTCACCC
GTAAACATGATGGATCACCACGTTGAACTGTTGATCTCTCCCCCTTAAAT
AAACACTGCAAAAGGGAGACTCATAATGCTGAATCGCCATTCCACCTTGC
AAGACGGATCCCACGACACACATGGAAGACGGTTACTGACGCATGGAACG
GTTTTCATAGTGTCCCGTTGCGTGAATCCGATCGTCACCTCACAACATTC
ATCACAACATATGGTAGATGGAGATACAAACGTGCTCCTCAAGGTTTCTT
GTCATCTGGGGATGGTTACAACCGTCGCTTTGACGCTATACTCGCTGATT
TTGATCGAAAAGAGCGCATTGTGGACGACACGTTGTTTTATGATAATGAA
CTCCAAGAACATTGGTGGAGAACTATTGACTTTCTTATAACTGTCGGTAA
TGCTGGTATCGTTCTTAACCCAAATAAGTTTCAGTTTGCCTCTCGCGAGG
TAGACTTTGCTGGTTTCCGCATTACTAGTGAACGCATTGACCCACTTCCC
AAATATTACAATGCGATCAAGAACTTTCCTACACCTAAATCAACCACAGA
CATTAGAAGTTGGTTTGGGCTAGTGAACCAGGTTGCGAACTATGCTCAGC
TTCGCCAGTACATGGAACCATTTCGTCCTTTTCTGTCACCCCGCCATCCC
TTCAAATGGACAGCTGAACTCAACAAGGCTTTTGAAGATTCCAAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATCGGGGATCGATTGTCTGGTTGGTCGGATGTCTTTCGCTCACC
TAAAGGATCGCCACAAGCAGGATCAGAGGGGCTTATCTGCTGCCTTCGAA
ATTGTTTCGCCAGATTCGGTGTTCCAGAAGAAATTTCTAGTGATGGAGGT
CCAGAATTTGTCAGTAAAGCTACAGAAGATTTCCTTGCCAAATGGGGAGT
TCGTCATCGCCTATCATCTGCTTACAACCCGCAGTCAAATGGCCGAGCTG
AAGTTGCTGTGAAGACTACCAAACGTCTCCTTCGATCGAACACATCTCCA
TCAGGAATACTTGACAATGATCGCTTCATCCGCGCAATGATGCATCTCAG
AAACACCCCAGATCCAGACTGCAACGTCTCACCAGCTGAAATCGTATTCG
GTCGACAACTTTGTGATGCATTTGCTTTCGTTAACAGACTGGAGAAGTTC
AACAATGACAACATCAGCCCAGTTTGGCGTGCTGCTTGGAAGAAAAAGGA
GGAGGCCCTTCGACAACGTTTCCACCGATCAGCCGAAGAACACAACAACC
ACACACGACCGCTACCTCCTCTTCGTTTCGGCGATCGATGCTACATACAG
AATCAAACCGGTCCCCATCCAAAACTCTGGGAGCGTTCTGGTACCGTTGT
GGAAGACCATGGCCACAGTAGTTACACACTAAAAGTCGACGGCACTGGTC
GCGTCACACGTCGTAACCGTCAACATCTTCGCCGATTCCAACCTGCTTCA
ACAGAAATTGTCAGCAGGCAATCATTCGTCGGTCAGCCAGTACCCGCTTC
CATTAGACATGAATCTCCACCTCCCAAGGCACAGGAACCTGCACCGAGCG
TTCCTGCGACGTCCCCATCGTCGACAGTTCCTGCACCCATGGAAATCCGT
CCCATCCCTGACGTCCCCATACAAGACGAACCATCCCATCCCGAAGATCA
GTCACCTAACAAGAGTCCTCCCCCAGTTGTGTCCACCCCACGACCACAAC
GCCAACGTCGTTCACCTCGTCGTTATGAACCAGAAACTGGACATTGGAAA
TGATACGAACTGATNCGGTGTGCATATTGCAATAAGAAAATATGTTTTAA
TGTTATAAGAAGCATATTATTGTTATTTGGTTCAATTGGTTCAGTGTATC
AAATCTCTCAGTTTAGTTGATACTTTGGTATCTTCGTTGCGTCACAGCGA
AAGGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCGGCTTT
AGGCTGGGCTGTCAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCATTGGAATTAAATGC
ATTCAGGGGAGCTAAGGAAAATAGTCCCCGGGTGTTGCAAAATCTTCTCA
CAGCTGGATCTGATTATTGGCTTATTAGATTGTTAGGACTTTGAGCAGAT
TAGAAGTGATTCCAAACCTTGTTATTGAAATTTTCCTACAGTTGGCATTG
TATTCTGACAGATTTACTGAGAATCAGGTATTCACTCAACCCTAAAATTT
CTATTTGGCCATTTAAAAGCACTAAGAAAGTTTGACATAACCAAAAATCT
AAAAAATATTTTAAGAGTTTGTAGATTTTGAAGGTTGTTCTAACTTAAAG
TTTAGGACAACCTTCAGGTACCCAGGCCTAGCCTGATATCAGATTGTGAA
TGTTTTCTGCACACCACGCTGAAGCTCTAAAGGGATGTGTGAAAACGTAA
CAATCTAACAAATATGCAATCTGGAAATCGTAAGGACCGCGTTCGTCTAA
AAGGACTAGGAATGACAACAAAGTTGCGTATTGTGTTTATGAATAGGGCG
CCGTATCAGTTTTTAACTTTCTGGCGCACAACAAGATTCTTGTTGTAGAA
TTTTCCGCGGGAGGAATTTCCTCAGATGTATAATTTTCAAGCGCCCTCAG
AGGTCTACCGCGCATAAGAAAATTATGAACAGCTGTTATCAGGTTACCCA
GGTCAGGATACAGATACTGGTTTGTTGGATTTGTGACACTTAAGAGAAAT
CTTGAGAATTGTTGGTAAGGTTATATACAGTTACTTTAAAAATCATTTCC
AGCTATTAATTGTGTCTACTTTTCAATGATTTTCAAAACTTTGAAAACTT
TTTCTGGTGTAGCCAGAGCCAGATGGTACTGATCGATAAATTTGATTATC
GAAGTAATCAATAATGCTTGAAGTAATCGAACGGCCACTTATCGATTAAC
AATCGAATGTCAAGTACCAAAATTTCAAAAAAATTGTGAGTATTTGATCA
CTTTCTTGACAACCCTTGGAAGACTCAATAACCGTTCGAGTACTTTGATT
GTTATTGATTATTTTCGATAACTTTGACAACTTCGATAACCAATTGATTA
CTTCGATAACCAATTACTATGATATATCTTTAAGAAAAACCAAAAAAATG
ACCTAAAACCAAAGCACAAAAAGAAGGCCCGCCATAAAAGATTTGACCCC
CTTTCCCAGCCATTTCGCCCGCCATTTTGTGTGCCTTCACTCTGGGTTTC
CTCAAGTATATAACTCATATCGCGCGTTCTGATTAGTCGGAGAAAGCGAA
AGTGGTTTTCGCATGTGAATCGCGTGTTTTAATTGGCCGAAATAAACTTG
GTTTCAGATTATTTTGACGCGCTGCTACTGGAAACATATTTGATAAAATC
GAAGGCTGGAAGGTACTCAATCGTACTCAATACGATTGAAGATATTCAAT
ATGATCGAAGGTAATCGAAAAGTAATCGAAATGATTGAACAAATCGAAAA
TGGTCGAAGAAAATGCCATAATCTGGAGTCGAGTTAGTATTCGATCACCG
ATAAAATCGATAGGTGGTCAGACCACCTTCGATTATTATCAATCATTATT
GATTACTTTGATCACAATCGAATGTTCGATTAGTACCGTCTGGCCAGGGC
CTTATATTTTTGCCTCGCCAGTCAAGAAAAATCGCACATAAGAAAATTTT
TGACTTAATCTTTCTCAAAAATGCTTATAGATATCAATCACATGGGTTTT
ATTTTTTGTTCCTGAAACTACCTTATTGGAACTAATTTTCACGGTTCCAA
AAAATTGCATTTCGCTGGTTTCAATTTTTGCAGTTTTTTCATTCTGGAAT
TTTTGCGGGTTTTAATTTTCGCGATTTTGCCCTTTTTTGGACAAATTTCT
TTCATTTTCCTAGGGATTTTTCAAATTTTTCAATAAAATTTGAAAAAATT
GTATTTCGCGGGAATTAATATTTTCGCAGTTTTTAACTCTCAATTTTTTT
TGCTGGCTCAAATTTTCACGATTTTGACAAAAAAACGCGAAAAACACTGA
AATTAATTCTCGCATTAGGTAAATTAGTTCCGATAAGGTAAGCAACTTTC
TCTATCAAGAACGATGAACAGGTTTCCCCAACATTAGTTGATTCGTCTAC
CCCCTCTGCACTTGAACTGGAGTGGAAGAACCCATTCCCCAAAAGAGATT
CAACCCAGATGTGAGATATATTTGCAAATCGTTTTTGGATATGAGGCTCC
TTACTTCCAAAAATCAGAAAGCCAGCCCAAAACAAGTTTCTTTGTATTTT
CAAGCTTACACATCTCTCTGTTATCTTTCCTTTTTTATTTGAACATTTCA
TCTTCTTTCATCAGGTTTTTCCACTCTGCTTGTAGTTCGTTTTTGTTACT
ATGTTTGAATTGTAGTATTTGTTGATATTTCAAATAAGAAAAGTTTGTAT
CATTTTCATAATACTATAATAGACAACATGAGCCCTAGAAAAGACCTTCT
CACTCAACATTTTAGTTTAAAAAGGTCATGAACCAATTATTTCTAACTAA
ACCAGGCATATAGGATAACCTCACCTCCTAGTCTGGTTCTTACAGACAAT
ATTGCTCATATACTTTTTTCAGGGCACTTCTTCGACCACTTCTAAAAGAG
AAGTCAAAATTAGCTTGCTCAGAATTTGATGTCAGTTGCATTTGAATAGT
ATCAAACTTGTTAGCATTGCAGCTGTTCTGCTTTCTTCCTTGCCTGGCCA
GTCTGAAAAGAAGCGAAATGTTACGCCAGAGCTGCACCAAATTAACTGGG
AAAAGTTGAAGGCAGCAGATCTCAAACCTCAAATCTACGCCAGAGATATC
CGGCGCACAAGCCGCAATTTCCAGACTGGTTGCCTGGGAACGTAAACAGG
TTTTTGTTTCAAATATTTCAGTAACCATGATGAAATAGCTTGTCGGTTGT
GCCCACAAAAACTAATTGGCTTCAATTTTTAATTTTGACCCTTTATTTAA
AAAACCTCATAACTTCACAAAATATTAGTTGACATATTGACATTCTATAT
GAGTGCCCCAAAGAGCACGAACAGAGAGGGTTCTACATCAAAGTTTTAAT
TCTATATACCTATGGACCCATTTTTGAACCACCTAGTAGTAAACAAAATT
AGATGATTATCTTTTCTCTCAAATTCAAAAATGTATACATGTACTTTGAG
CTTTGTGCTTCTGTACTAATATAGTCGAATGTACAAATAATGAAAAACAG
TGCATAAAAATTATTTTGTAAACTGTATTCTGGATTTTGTTCATGACAGG
GGGGTCAAGCAGTTAGTACAAGATACTATGCCTACTAACTACTTTTTTGC
AAGAAGATAGTAACACCACCATCTTTTGTATACTTAGTACAGTTAGTACT
AAACTAAATTTTGGGTCAAATTTACATACACCACCCTTGAAAATGGCTTT
TTGACCACCATAAAGCAATAAAATTGGATAAAACAAAATCTAATATCTTA
AAATGTTTCACTTTTCCATTTTTTCAATAGGAAATTACAACACTTTTGAA
TATTTTAGAATATCGAATTTCTATGACAATCTAATTCTTTTTTATTCAAT
TCTAAGTCTTTTTTAACATTTCAAAAAAAAAAATTATTTTTTGAAAATTT
GGAAAAGAAATTCAAACTTCCTAGAATTTTTTTTTGTAAAATAAGATGTT
TTTTTGAAAAATGTCCTCACAAAATTTCTTTTTTCATGCATTTAGTACCA
AAATTTGGCAATTTTTTAGCAAGGGACCACCCTTTTTTGCAGTTAGTACA
TCTGAGTACCAAGTGACTTCATCCAATTCACATGGCACACCACCAGGATA
CTAACCGGCATAGTGTTTTGTACTAACTGCTTGACCCCCCCCCTGATCAT
GAAACGCATGAATATCAAGAATTATTATGATTTTTTCAGAGAGGAAATAA
TAGAATGGAGCAAGACCACAGAAGTGCTGCATCGTTGAGATATGACAGAG
AGTCTGAACAAGAAGAAAATGAAGTTTTTATTCAACAGCCTGCTGAACCA
TGGAGAAATGCAATAGCATTTTGGTTACTTGGTCTGTGTAACAATTTTGG
CTATGTTGTTATGCTTAGTGCTGCTTACGACATTTTAAAAGAACAGCAAC
ATAAACAGTCAGATGATCCATCCGGTCATGAAACCTTCCACTGTAACCCA
ACCTCCACTGGTGTCGTCCTTATAGCTGATGTTTTACCTGGTTTATTGAT
CAAACTGACTGCTCCATTCTACATGCAGAGAATCAACTACCATGTGCGTG
TTGGTTTGTGTGTCTTTTTATTTGCTGCAAGCTTATTTACAGTGGCTTAT
TCGTCATCAGTGGCAGTCAGTTTGTTTGGTGTCGTGCTAGCAAGTATTAG
TTCTTGTGTCGGGGAAATCACTTTTCTAGCTTTCTCTTCATATTACACAA
AAACTGTGATTTCATTTTGGTCATCTGGAACTGGTATGGCAGGACTTGCT
GGTTCACTGGCATATGCTGGCCTCACTCAAGCAGGGTTGTCAAGTAGAGA
TACATTACTCTTGCTTCTGGTAGTTGCTGTTGTATGGATTATTGCGTTTT
GGGTTATTTTGAAGCTGCCTAATCAATATAGACTTTGCAGTAGAGCTAAT
TATAATAGTGATGAGAATGACCCTCTTATGAATGAAGATGCTGCATCAGA
CCGTGTTTCTTACCTACCCATGTCGTCCAAATTGAAAATGATGATTCCGC
TATTAAAATTTATGATCCCGTTGTTTTTGGTATATCTAGCTGAGTATACT
ATCAACCAAGGCTTGTATGAATTGTTGTACTACGATACATGGCTTAGTCA
ACCAGAACAATACCGCTGGTACCAAGTAGATTACCAATTAGCTGTTTTTA
TTTCTCGCTCGTCAATTAAATTACTCCCAATCAAGAAAATTATCATCCCA
GTGATTGTCCAATGGTGTATTTTAATCACTCTTACTGTCGAAGCTACCAA
CCCATTTCTAAGATATATCTGGTTTGCTTTGGCAATAGTGTTTCTGGAAG
GTTTATGTGGTGGTGCAGTATATGTCAATGCTTTCACTTTGATATCTGAC
TCCTCTACAAGTGAAAACAGAGAATTCAGAATGGGTGCCGCCAGCATGGC
TGATTCGATCGGTATTACCCTGGCAGGAATTATTGCAATACCTATACATA
ATGCTATTTGCGATTACAGAACTTAGTTCTTTAACATTTTATTACAGTGG
AGTCTCCATAACTCGAACACGCACGGGGAACAGTAGAATTATGGAGTAAG
GCTTATTAGGCACTGTAAACTGAATGGACCATGAAACTTGTTTGAGTGAG
AGAGACATTCGAGTTATGGAGGTTCAAGGCTCGAAATAACGATTTCAAGT
GGGTCGGACAAAATGTCCGATCAGGGTTGCTTTAGCTTGAAAATTATGAT
TTTTGGGTCGGACATGAAGCCATTTGGGTCGGACAATGTCCGATGTCCGA
CCGTTATTTCGAGCCCTGGAGGTTCGAGTTAAAGATACTCCACTGTAATC
TGCAGCAATTGAAAATTGATAATATGGGTTTTATCTATATATTAATAGCG
GTAGTCTGTATGTCGTTTTGTATGTTTGTCTGTTATACTTTCGTTTTCGC
ACGCAATGTTTTTGTTCTTCCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048348-exon-scaffold_142-1575043694:147010..147064 | TCONS_00048348-exon-scaffold_142-1575043694:147010..147064 | Clytia hemisphaerica | exon |
| TCONS_00048348-exon-scaffold_142-1575043694:132339..134075 | TCONS_00048348-exon-scaffold_142-1575043694:132339..134075 | Clytia hemisphaerica | exon |
| TCONS_00048348-exon-scaffold_142-1510915933:147010..147064 | TCONS_00048348-exon-scaffold_142-1510915933:147010..147064 | Clytia hemisphaerica | exon |
| TCONS_00048348-exon-scaffold_142-1510915933:132339..134075 | TCONS_00048348-exon-scaffold_142-1510915933:132339..134075 | Clytia hemisphaerica | exon |
| TCONS_00048348-exon-scaffold_142-1491911889:147010..147064 | TCONS_00048348-exon-scaffold_142-1491911889:147010..147064 | Clytia hemisphaerica | exon |
| TCONS_00048348-exon-scaffold_142-1491911889:132339..134075 | TCONS_00048348-exon-scaffold_142-1491911889:132339..134075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:132339..147064 - |
Blast
BLAST of TCONS_00048348 vs. Swiss-Prot (Human)
Match: CLN3 (Battenin OS=Homo sapiens GN=CLN3 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 2.363e-76 Identity = 183/438 (41.78%), Postives = 262/438 (59.82%), Query Frame = 2
Query: 92 AASLRYDRESEQEENEVFIQQPAEP--------WRNAIAFWLLGLCNNFGYVVMLSAAYDILKEQQ---HKQSDDP-------SGHETFHCNPTSTGVVLIADVLPGLLIKLTAPFYMQRINYHVRV---GLCVFLFAASLFTVAYSSSVAVSLFGVVLASISSCVGEITFLAFSSYYTKTVISFWSSGTXXXXXXXXXXXXXXTQAGLSSRDTXXXXXXXXXXXXXXXXXXXKLPNQYRLCSRANYNSDENDPLMNEDAASDR---VSYLPMSSKLKMMIPLLKFMIPLFLVYLAEYTINQGLYELLYY-DTWLSQPEQYRWYQVDYQLAVFISRSSXXXXXXXXXXXXXXXQWCILITLTVEATNPFLRYIWFALAIVFLEGLCGGAVYVNAFTLISDSSTSENREFRMGAASMADSIGITLAGIIAIPIHNAICD 1330
A S R +SE EE + +P P W+NA+ FWLLGLCNNF YVVMLSAA+DIL ++ ++ DP + F CN ST VL+AD+LP L+IKL AP + + Y RV G+C A S VA+S SV SL GVV ASISS +GE+TFL+ +++Y + VIS+WSSGTG AGL G+L+Y GLTQAGLS + TLL +L + + + +++++L P S PL+ +A + S L + + + LL +++PL +VY AEY INQGL+ELL++ +T LS +QYRWYQ+ YQ VF SRSS++ I+ ++Q L+ L + FL I+ I+ EGL GGA YVN F I+ ++ E+REF M A ++D++GI+L+G++A+P+H+ +C
Sbjct: 5 AGSRRRFSDSEGEET---VPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAHDILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLHLLPYSPRVLVSGICA---AGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPGGEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQGLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLLADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGISLSGLLALPLHDFLCQ 436
The following BLAST results are available for this feature:
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