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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048369 ID=TCONS_00048369|Name=TCONS_00048369|organism=Clytia hemisphaerica|type=transcript|length=2169bpRun BLAST on NCBI protein sequence of TCONS_00048369-protein >TCONS_00048369-protein ID=TCONS_00048369-protein|Name=TCONS_00048369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp EMDQHGEVEMQTLKNEEKLPENEKKESYQSIPEITRSVVRTRLSPINDILRun BLAST on NCBI transcript from alignment at scaffold_142:438278..454377- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048369 ID=TCONS_00048369|Name=TCONS_00048369|organism=Clytia hemisphaerica|type=transcript|length=16100bp|location=Sequence derived from alignment at scaffold_142:438278..454377- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:438278..454377- >TCONS_00048369 ID=TCONS_00048369|Name=TCONS_00048369|organism=Clytia hemisphaerica|type=CDS|length=16416bp|location=Sequence derived from alignment at scaffold_142:438278..454377- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048369 vs. Swiss-Prot (Human)
Match: S28A3 (Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1) HSP 1 Score: 426.402 bits (1095), Expect = 3.181e-138 Identity = 251/558 (44.98%), Postives = 354/558 (63.44%), Query Frame = 3
Query: 180 FFQAHKALCVLTLGIVFLVGFLVYFCFAVTMNAERAKDLIYVTVFGFFCLCYWLIKKXYVTVFGFFCLFYWLIKKFFGRVIWNRCFKPIAVALDSHQRLLNWIGCLALVGFLIFWICWDTRK-DPGRLISLAGLLVYILIGFLFSKQRDRIKWRPVITGFALQFFFGLLILRTEIGFNVFKWLGDRINILLSFSGPGTELIFG---KSDVFAFAVLPIITYFSSLTYVLYYLGFMQVIINKLAWILQITMGATATESVNTAGNIFLGQTESLLLIRPFIPKMTKSELHALMTGGLATIAGSLMALYIIFGVSASHLLSASVMSAPAALAMSKLMYPETEEPEFV--GEVKTEATEERNIFEAIAVGASLSXXXXXXXXXXXXAFVSIVSLFNGLLSWLGSMVDCPQLSFEFLCSYLFMPFAYLMGVEYQDSFHVGEMLGTKTFLTEFIAYKQLSAMIKNRKF---QIAGGLQ--LSVRSEVISTYALCGFSNFGSMGVIMGVLTGIAPEKRTIFSQLVFRALVAATLACFMTASIAGLLYKDLDVTPTPGPTNVTRIM 1820
F + HK + + L G+LV A +N RA L +TV F F ++ L+ K+ R+ + P L+SH L W+ +LV +IFW+ +DT K +L+S GL++YI++ FLFSK R+ WRPV+ G LQF GLLILRT+ GF F WLG ++ L ++ G +FG K FAF VLPI+ +FS++ +LYYLG MQ II K+ WI+ +T G++ ESV +GNIF+GQTES LL+RP++P +TKSELHA+MT G +TIAGS++ YI FGV +SHLL+ASVMSAPA+LA +KL +PETE+P+ +K E+ + N+ EA GAS SI ++ N+ V +IAF++++S N LSW G+M D PQLSFE +CSY+FMPF+++MGVE+QDSF V ++G KTF EF+AY+ LS I RK + G+Q +S+RSE+I+TYALCGF+N GS+G+++G LT +AP ++ + RAL+A T+ACFMTA IAG+L + TP N ++
Sbjct: 93 FCRKHKTTLRHIIWGILLAGYLVMVISACVLNFHRALPLFVITVAAIF-----------------FVVWDHLMAKYEHRI--DEMLSPGRRLLNSHWFWLKWVIWSSLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLLGLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHFFAFKVLPIVVFFSTVMSMLYYLGLMQWIIRKVGWIMLVTTGSSPIESVVASGNIFVGQTESPLLVRPYLPYITKSELHAIMTAGFSTIAGSVLGAYISFGVPSSHLLTASVMSAPASLAAAKLFWPETEKPKITLKNAMKMESGDSGNLLEAATQGASSSISLVANIAVNLIAFLALLSFMNSALSWFGNMFDYPQLSFELICSYIFMPFSFMMGVEWQDSFMVARLIGYKTFFNEFVAYEHLSKWIHLRKEGGPKFVNGVQQYISIRSEIIATYALCGFANIGSLGIVIGGLTSMAPSRKRDIASGAVRALIAGTVACFMTACIAGIL------SSTPVDINCHHVL 625 The following BLAST results are available for this feature:
BLAST of TCONS_00048369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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