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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048402 ID=TCONS_00048402|Name=TCONS_00048402|organism=Clytia hemisphaerica|type=transcript|length=2031bpRun BLAST on NCBI protein sequence of TCONS_00048402-protein >TCONS_00048402-protein ID=TCONS_00048402-protein|Name=TCONS_00048402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp MASFEKAYLVLFLLSLVISSVHLYAIDEVISEDAGEEELVKQSRDDSVFDRun BLAST on NCBI transcript from alignment at scaffold_142:853858..861610- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048402 ID=TCONS_00048402|Name=TCONS_00048402|organism=Clytia hemisphaerica|type=transcript|length=7753bp|location=Sequence derived from alignment at scaffold_142:853858..861610- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:853858..861610- >TCONS_00048402 ID=TCONS_00048402|Name=TCONS_00048402|organism=Clytia hemisphaerica|type=CDS|length=22176bp|location=Sequence derived from alignment at scaffold_142:853858..861610- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048402 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 9.385e-39 Identity = 85/228 (37.28%), Postives = 121/228 (53.07%), Query Frame = 3
Query: 384 LFEADIALVDKPEDEDDNQNAINSKMVRKRGLRRSQEYLWIDRVVPYEYTNEISVSGQSAIDKAMQEISTKSCISFVKRTTENNWVKFVNRGACFSSVGRSFWRSGSQEISLAPSCLTSHGTIMHEILHSLGFWHEQSRPDRNQFVEIMWENIAEGEEHNFAKYTRGESDDLNSQYDLSSIMHYGRFSFSKNGQPTVLA-ISDPNKRLGQREKLSEEDVIQLNALYRC 1064
LFE DI L D +N+I ++Y W +PY + + ++ + I A + K+CI F E N++ C+SSVG R G QE+S+ +C T+ HE LH+LGFWHEQSR DR+ +V IMW+ I G EHNF Y+ SD LN YD +S+MHY + +F +PT++ ISD +GQR S+ D+++LN LY C
Sbjct: 48 LFEGDIRL-----DRAQIRNSI-----------IGEKYRW-PHTIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNR--RVGKQELSIGANC-DRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNC 255 The following BLAST results are available for this feature:
BLAST of TCONS_00048402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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