|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048403 ID=TCONS_00048403|Name=TCONS_00048403|organism=Clytia hemisphaerica|type=transcript|length=2323bp
GTCTACAACACCCATCTTACATCTTTGACGTTGATTggacgttaaatgaa
cgttgaaacaacgccgTGTGTCAGTTGGGAGTTTGTATAAGGCATCTTTG
TTGAGTCAACATCAGTATTAGgcattaaaatttgaataagGTACAACAAA
CTTCACTCGAAGAAAACAACACAAACGTCGCCATGTTGGATCGAAATGAA
CGGGACCGAAAACCTCGATCGAACGGTCGTTACTTCAATAAGCAACGTGC
ACAACAATACTCTCCAACCTCCACCGACACTGGATTGTCCGGATCTCCAC
CGTATGTAAACGGAATTAACGGAAGCCGGACTAATCTTACAAATGGCTAC
AAACCATCCTACTCGCCGACATCTACTGATGCTGAATCAGTCTCACCCTT
ACCTTCAAATGGGTGGGATTTTTCAGAGCTCGAAATGCGCTACACATCAA
TGATAAATAGCCTAAAAGACGAACTTTCTTTTCTTGAAGAATCAAACACC
AATCTACTTACGGAGCTACGAGAAAGTCAAAACTCGAATTACGTATTAAC
GGAAGAAATTCGACGTCAGCAACGTAACAACTTAAGTACGTTAGATGAGT
TACAAGCGTGCCAAACAGCAAATTCAGTTCTGAGACAGGAGTTGCAACGT
CTTGAGCAATCCAGCGTTAAAATGTCCAGAGATTCTGAAAAATACAAGAA
GGCGAACTCGATGCTTAAAGATGAGATCAAAGACCTCAAAGCTCATAACT
ATAAACGTAAAAACAGTATGGTTACACTCAAAGAGAAAGCTATTGATCTA
CAAAATGACATTCTAGAAAAAGAGAAGGATTTCAAAGATTTGTCATCTCT
CAAACAAACTGTCAATATAATAGTCGAAGCGGTCGAAAACGATTCTAACA
TCGATAACGGCTATTTCCCAACCGATTCGGACATTTCTAGTAACGATGGC
AACGATGATAAACAATTGGGTGCTTTCACTCCAAAACCGGTAAAAAAATC
GGATACTTTCTCAAGTTCTTTGCCTTCACCTCTAGCAAGGAAATTCTTTG
CACATCAAAACGGGGGTAAATCTCCATTACTGAGACGAAAACAGAAAGAC
AAATACAACACTGACCTGACTGAACGATCTCGCTCGAGATCCTTGAACGT
GACTTCTGGGGAAAGCCGGGACGAAAGTCCCTCTCCTCCCCATTACAACG
GTCCCTCATCCGGCCCTTTACCGGCGGCTGGGGACCGACGACGAGGGTCT
CTTGATAGTTTTCATCAGAATAAGGACTTGAAAGAGACCTCTCTTCGTAA
CAATACTTTGACACGACAGTTAGGGAAATCCCTTGAACGACTTCACGATC
ATAAAATCAAACGATCGGAGTCGGGGAATCGCCCACGTAGTATGACGTTT
GACGATCGACATAACGATAAAATGACGGATGACTTTTCTTACGTCGTAAA
AGGTGAAAGTATTGGAACGATCAACTCTGCTTCTCCCGAGCAAGGAACCT
TTGAGCTCTAACATTTCATCTTCCGCGTACGTCTGAAGAAACGATTTAAG
TGGATGCCTAACTCGGATACTACTTTGAATTAATACACCCAGGACGTGTA
TCTTCGAGCTCTAACATCTCTTCCATTGAGAATGTACAACCATAACAAGC
CAAGATGTTGTTTGGACGTTATATTAGCGTTCTTTTAACGAATAATGCTC
AGGCGAGAAATAATCTAACATTTCAAATGTTCTAACATTAATTTGTAGAA
GGACTTCAAAGAGACTGACATATGAACAATAAATGAACATGTTACATCTT
GGCTCCCGAAACAACGGATTTAATACACAACGTCCCGCAATATCAATCTA
ACGTCGTACAGATCTTTTTCGATGGATATTGTTAATGTAGGATCACTAGG
AAGGCACTCATTAACTCAAAAATTATTTGTACGCTTGTATGCGTAGCATC
AATGAAGTCTTTAGTTAGAAGACATTTTTATCTGTACGAAAATATATCTC
TAAAGCGTTCACCATACTTGGAAATGTATCTGGAAATTATCACAACTACT
GCTGTAAAAATACTACTACGAACCGTAAAAATGATCAAGAAGTGAAGTCT
GATAGACTTTTCAATGGCAAAACAGACcaataaaattttacaacttttta
ctACAGTTTTGCGTGtttttgtctttaaaaataatatctaaatatctttt
aaaaacctTCTATAAGAATACCCACGTATTTTTACTTGGCAATATACTAA
GAACATATTTGACTtaagaattttgtaaaatattgttattttctACAAAA
CTTTGAAACATACTAGAAAATGA Run BLAST on NCBI transcript from alignment at scaffold_142:870718..874055- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048403 ID=TCONS_00048403|Name=TCONS_00048403|organism=Clytia hemisphaerica|type=transcript|length=3338bp|location=Sequence derived from alignment at scaffold_142:870718..874055- (Clytia hemisphaerica)
GTCTACAACACCCATCTTACATCTTTGACGTTGATTGGACGTTAAATGAA
CGTTGAAACAACGCCGTGTGTCAGTTGGGAGTTTGTATAAGGCATCTTTG
TTGAGTCAACATCAGTATTAGGCATTAAAATTTGAATAAGGTATTTTCTG
TTGGAAAAAGTTTTGCTAAAAGTTAACTACTAACCTTTGAAAACTTCAAA
CTATTTTGACAAAAACTCGCCAAAATAAAAACTTTTGAAACTATGCAAAG
TTTTTGGGTCACCTATTAGAATATCTCATCTTTGTTTCCCAGGTACAACA
AACTTCACTCGAAGAAAACAACACAAACGTCGCCATGTTGGATCGAAATG
AACGGGACCGAAAACCTCGATCGAACGGTCGTTACTTCAATAAGCAACGT
GCACAACAATACTCTCCAACCTCCACCGACACTGGATTGTCCGGATCTCC
ACCGTATGTAAACGGAATTAACGGAAGCCGGACTAATCTTACAAATGGCT
ACAAACCATCCTACTCGCCGACATCTACTGATGCTGAATCAGTCTCACCC
TTACCTTCAAATGGGTGGGATTTTTCAGAGCTCGAAATGCGCTACACATC
AATGATAAATAGCCTAAAAGACGAACTTTCTTTTCTTGAAGAATCAAACA
CCAATCTACTTACGGAGCTACGAGAAAGTCAAAACTCGAATTACGTATTA
ACGGAAGAAATTCGACGTCAGCAACGTAACAACTTAAGTACGTTAGATGA
GTTACAAGCGTGCCAAACAGCAAATTCAGTTCTGAGACAGGAGTTGCAAC
GTCTTGAGCAATCCAGCGTTAAAATGTCCAGAGATTCTGAAAAATACAAG
AAGGCGAACTCGATGCTTAAAGATGAGATCAAAGACCTCAAAGCTCATAA
CTATAAACGTAAAAACAGTATGGTTACACTCAAAGAGAAAGCTATTGATC
TACAAAATGACATTCTAGAAAAAGAGAAGGATTTCAAAGATTTGTCATCT
CTCAAACAAACTGTCAATATAATAGTCGAAGCGGTCGAAAACGATTCTAA
CATCGATAACGGCTATTTCCCAACCGATTCGGACATTTCTAGTAACGATG
GCAACGATGATAAACAATTGGGTGCTTTCACTCCAAAACCGGTAAAAAAA
TCGGATACTTTCTCAAGTTCTTTGCCTTCACCTCTAGCAAGGAAATTCTT
TGCACATCAAAACGGGGGTAAATCTCCATTACTGAGACGAAAACAGAAAG
ACAAATACAACACTGACCTGACTGAACGATCTCGCTCGAGATCCTTGAAC
GTGACTTCTGGGGAAAGCCGGGACGAAAGTCCCTCTCCTCCCCATTACAA
CGGTCCCTCATCCGGCCCTTTACCGGCGGCTGGGGACCGACGACGAGGGT
CTCTTGATAGTTTTCATCAGAATAAGGACTTGAAAGAGACCTCTCTTCGT
AACAATACTTTGACACGACAGTTAGGGAAATCCCTTGAACGACTTCACGA
TCATAAAATCAAACGATCGGAGTCGGGGAATCGCCCACGTAGTATGACGT
TTGACGATCGACATAACGATAAAATGACGGATGACTTTTCTTACGTCGTA
AAAGGTAATGTTTAATGACTATGACATGACGGAACTGACGAATCGTTTTT
ATAGAAAATCTACGTTTATTTGTTTCAACAAGCTTATAGTGACTACCGCA
TGTTTTTCAGACGTGTAGGGCTGCAATACACATATTTCCTATTAGCAGAT
TCATGCAAAAGTCACGAAAGACGTCGAGTAAACAAACTTTTGATTGGCGG
AGGGATGCAAAGATTACCTCTTACATGGACAATTTGAAAAAATATGCTTG
TATGTGCAATATTTCAGCCAATCAGAGACTTTCTCGACGTTTTTCGTGAC
TTTTTTACACGAATCCGCTAATAGGAAATAGGTGTATTCCCTTTATCAAC
CTTCGTATAAAGAAATCGATTTAAGCTCCCCTGCTAGGCATTTTCGTACC
CAGAGTCTCTTACACCACTTTTTGATTGTGCTGATGGATGTGATACAATC
GTGAACGCTATTAGATTCATCGAAAAAGCGAAATAAGGGACTGGGTTCGA
GTCTACCTATTTTCTAAATGCAAAACTTTTCATGATCTTATAACTGAATG
TTCTTCAATTTTTAATGCTCTTGTGTTCTTATAAGTAAATGTTCCTTCTT
TGACTTTTAACGTTATATATAACTAACTACAGTTGACTTTCTCTAATTCG
ATCTCAAAGCACAAAATATTATCTTCGAATTAGAGAACGATTCGAATTAC
AGAGAGTAATTTATTTCATTCTCAAGCCGGGGGACCAATGTTTTAGTTTT
AGTTTCGAAAAAACTTAAATAATAGGAGTTCGAACTAGAGAGAATTGACT
GAAGAAAAATGGTCTACCTTTTCGATGTTTTATCTAAAAATATGTTCTGT
ATTTGATGTTCTTTTAGGTGAAAGTATTGGAACGATCAACTCTGCTTCTC
CCGAGCAAGGAACCTTTGAGCTCTAACATTTCATCTTCCGCGTACGTCTG
AAGAAACGATTTAAGTGGATGCCTAACTCGGATACTACTTTGAATTAATA
CACCCAGGACGTGTATCTTCGAGCTCTAACATCTCTTCCATTGAGAATGT
ACAACCATAACAAGCCAAGATGTTGTTTGGACGTTATATTAGCGTTCTTT
TAACGAATAATGCTCAGGCGAGAAATAATCTAACATTTCAAATGTTCTAA
CATTAATTTGTAGAAGGACTTCAAAGAGACTGACATATGAACAATAAATG
AACATGTTACATCTTGGCTCCCGAAACAACGGATTTAATACACAACGTCC
CGCAATATCAATCTAACGTCGTACAGATCTTTTTCGATGGATATTGTTAA
TGTAGGATCACTAGGAAGGCACTCATTAACTCAAAAATTATTTGTACGCT
TGTATGCGTAGCATCAATGAAGTCTTTAGTTAGAAGACATTTTTATCTGT
ACGAAAATATATCTCTAAAGCGTTCACCATACTTGGAAATGTATCTGGAA
ATTATCACAACTACTGCTGTAAAAATACTACTACGAACCGTAAAAATGAT
CAAGAAGTGAAGTCTGATAGACTTTTCAATGGCAAAACAGACCAATAAAA
TTTTACAACTTTTTACTACAGTTTTGCGTGTTTTTGTCTTTAAAAATAAT
ATCTAAATATCTTTTAAAAACCTTCTATAAGAATACCCACGTATTTTTAC
TTGGCAATATACTAAGAACATATTTGACTTAAGAATTTTGTAAAATATTG
TTATTTTCTACAAAACTTTGAAACATACTAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048403-exon-scaffold_142-1575043694:873916..874055 | TCONS_00048403-exon-scaffold_142-1575043694:873916..874055 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1575043694:872452..873763 | TCONS_00048403-exon-scaffold_142-1575043694:872452..873763 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1575043694:870718..871588 | TCONS_00048403-exon-scaffold_142-1575043694:870718..871588 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1510915933:873916..874055 | TCONS_00048403-exon-scaffold_142-1510915933:873916..874055 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1510915933:872452..873763 | TCONS_00048403-exon-scaffold_142-1510915933:872452..873763 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1510915933:870718..871588 | TCONS_00048403-exon-scaffold_142-1510915933:870718..871588 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1491911889:873916..874055 | TCONS_00048403-exon-scaffold_142-1491911889:873916..874055 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1491911889:872452..873763 | TCONS_00048403-exon-scaffold_142-1491911889:872452..873763 | Clytia hemisphaerica | exon |
| TCONS_00048403-exon-scaffold_142-1491911889:870718..871588 | TCONS_00048403-exon-scaffold_142-1491911889:870718..871588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:870718..874055 - |
Blast
The following BLAST results are available for this feature:
|
