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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048421 ID=TCONS_00048421|Name=TCONS_00048421|organism=Clytia hemisphaerica|type=transcript|length=1335bp
tNTGGATTATGGATCATCGAAAAGAATTTGGGTACTTTTTACCAAgGTGG
TTACTTCAGTGGAGACAAAGCTGGACACGCAATCAAAGAAGCCATACTAG
ATTACTGTCTTCGGCTGAAGAAAGATGTCTTGCCATTGGTGGATGCTTTG
GCGCCACCTGATTGGGTCTTGAATTCTCCCATCGGACACAGCAATTTAAA
GCCTTTGGAAAATCTTCATGACGCCATGGTTACGCCCCAATCACAAGAGA
GAGCGCCCTGGTGGCGTGAATTATCAGATCCAGTCGATGCAGGGTCAAAA
TCTGATCTTATTGTTCAAAGCAAGCTATAAATCGTAAAGTTTACGTTTGG
GATAGTTTTACGAacctacttttttttaaatcttctgaAACACATATCAG
GAATACACGGATTATATCGGtacagtcaaaacatgtgattactcgaaaaa
gttcacgtgattttattcccatgttgcTTGCTTTACAACTTTTAATTACA
ACAGTTAATTACTTTAtcagtgtcaataaattcgaaccaatcagaaataa
atgtcatgtaacaagcacataaaattttcgagtaaaagcgtgaatTGTCT
TCGGACTTAAactttgcaacctgtgtatccTGGTTTTATTCATTTTCCGA
TTAGTTTCATATTACGAATCTGGCAAAAATGATGGACATATAAGTCTCGA
GcattttgattagtttgatttgtAGATTAAATATCGGTTTTATCTATCGA
AGAAAGTCGTTTTCCAAAAAGTACCTCAAGGCTTCGCCAGGCTTTATATA
AAGGGgggtaaaataatttttaaaaatggtagattttattataatttttt
tgatttattttttatactttcAGTTAATTTTAATTCATCGTACATTATCA
TTTCAAGACATTTTGTCTGTATGTTAGTGCATAGGGCTTTTCGAGACGTT
TTCCTTACATATTAAAATTTCTCATTTTGCACACTGTACTTTCAGTTTAG
TTGGCAATGGAGTAATTTTCCTAATCCAATTtataaaagtagaaaatttt
tgtaacaaaattataaaagaaTTGTAAATAATATGAagcttttgaaaatc
aaataattTCGCAATAACTTGAAACAGAATCAGGTTGTATCAGACAATTG
GTGGGCTGGGTTAGGGAATGTCTCTTTTTGATCAAAACATGCAAGGGACt
tgttagtttttgttttttctaagtgTTGTTTCTACGCATTTAAAGTAAAC
GTCAAAACAAAATTGCAATCCAACGAAATTAAAAACACTTATCAAAAAGT
AGtaatatttcaattaatttatttGATAGTCAAGC Run BLAST on NCBI transcript from alignment at scaffold_142:935260..940167- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048421 ID=TCONS_00048421|Name=TCONS_00048421|organism=Clytia hemisphaerica|type=transcript|length=4908bp|location=Sequence derived from alignment at scaffold_142:935260..940167- (Clytia hemisphaerica)
TNTGGATTATGGATCATCGAAAAGAATTTGGGTACTTTTTACCAAGGTAT
TAAAATTTTTGATGTTGAGTTTTCTTGGAGCGTTGCGATTTTTCTAACCT
AAGGCTTTTTTGATTTATGTGCACACAAAATATCTAATATATGTGTAGTG
ATAATGAACATTCATGTTTAATGCTACTTTAATACAATAATGACCGGTTA
GTGAGGGCTGTACTGAGAAATATCCTATTTTTCCTGGATAAAGCGCTAAA
AATCGATCGAAGCTGAAGGAAACGGTTAACAAATACAATAATGACCGGTT
TCTTTCGGGCTGTACTGAAAATATTGCCCTCGGTCAACGCAACAACCTCG
CAAGCTCGGTCGTTACTTGACCTCGGGCGATATTTCTCAGTACAGCCCTC
ACTAACCGGTCATTATTGTATTAATAGATAGACATCGGGTCACTTTTATT
TGTGCACAAATTCCTCTAGACTATAAAGCTTTACGAAAAAAAATAATAAT
ACTGAAAGTAACAACCACCGAATAACTTTTATGGACATTGTGCATGAAAG
GGTTGGATCTAGAAAATTATTGAAATAGTTCGTTCATGTTAAATTTCTCA
ATTAGCAAATATTTATTTATTCAATTTCAGGTCTCGGTCCCTTATATTAT
CATCAAAATATAACTTTATTGGACCTACCCCGGTGGGGTGGAGGTCCTAT
AAATTAACCCATGTTCGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGT
TAGTTAGTTAGTTAGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTCGTTCGTTAGTG
TGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTT
TTGGCACAAAGGTGCATGGCCATAAACCCTCGAATGTGACGGAGCCCGAT
TTTCGAGAAAAAAAAAATTTGGGCAAATTTGGGTCAAAAAACGGCTTAAA
AACGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTTTTCTGAT
TTTTAGCATGAAAGTAGGGTACAATGATAGTTAAAAGATGGCTTAAGCAG
ATTTTTGCAAAAAAATTTTTTTGGCTGAAAAACGAATCTTTATCTATAAG
AATCACTATTTTATGAGCATAGATCAATGTTATTAGCCAAATTATTTTTT
ATTATTATTTTTTCTAACAGAAGAAAATGTCACGGTAGAGTGCGACGGTT
TGAGTTTTCTGGAAACCTTATTTATTAAGCTGTGCATTTTTCTGATAGNT
TTATCTATAAGAACCACTTTTAATAAGAATACATCAATGTTCTTAGCAAT
ATTATTAATAATAATAATAATAATGCTATACAAGTTCGCAGACCACCGTG
CGAGCACATGGGCCTCTATGAACCGCTCTTTGTTCGGTTTACAATTTTCT
TAAAATAGTGTTTTTTCCTAGGGCTCCCCCTGACTTTGAATTTAAAGTTT
GCATCCTTTATTGACGTGTTCATTTCTTTGGCTTTCATACACCACTCTTT
GATTGTCTTCCTTTCACTTTTCGTAAGATCTTCTGTCACACGGAAGGGCA
ATCTTTCTCCTTTAGTGATTGCTCTTAACACTGTATTTTTGTCTTCTTCG
TTTGCAAATCGGACTCTTATTGGTCGATAGCATTTTTCATCTTCCTTTTC
CTTCGAAAATTTTCCGATCGTTGAGTTTCTTCAATCTTTATATTCCTTAA
GCTTAGTTTCTTAGGTAAGACTTTTTCATTTAGATATTCTTCGTCGTAGA
TTTTGGTTGACTCCTCTGAATCTTCAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGTATTTTGACCAGTTA
TGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCA
GGTAGGTCCATAAAAGTATCGCTTGTTTAGGGAAAAATTCTTGATCACTG
ATGCTCTCTTTTTCACTCACAGGTGGTTACTTCAGTGGAGACAAAGCTGG
ACACGCAATCAAAGAAGCCATACTAGATTACTGTCTTCGGGTATGTTATT
AGATAAATTTTAAACGGCCAAACTTCCGCCCTGTGGGCAGAAAGTTAGCA
GTCTAAAGTCCTTACATTTTCTTCTTTTGACGTCAATGTATTGTATTGTC
AACTTAACATTTTGCCCGCGTTTTGTCTTTAAGTTATAATTGGCAGGGTG
AAAAGTGGATCGTCTAAACTAGAGCTTAGACCCCACACTGAGCTCCCAAC
GGTTATTCACCAATCCAAATTGTGCTTCCCCTGAGCTCGTTGTGATGAGC
TTTACCTTTGGTTGGTGACCAGAATGCTCCACCGATTAAGCTGCTACCTG
ATTAAGACTAGAAATGGTTGAAAGTACTTAAAGAAATTGGAAGAAGCTTA
AAAATTACATCTTTCTCGCTCCCACGATACAAAGTGCTTTGATTAATTTT
GCACTGATTTTACGAAAAATGCAAGTTTTTTTTGTCTCTATCATAATATG
AAGAATTTTTCCGTGTCTCTTTGTAGCTGAAGAAAGATGTCTTGCCATTG
GTGGATGCTTTGGCGCCACCTGATTGGGTCTTGAATTCTCCCATCGGACA
CAGCAATTTAAAGGTAACAAATCTCTTCAGCAGTAGTCTTCAGAAATTTT
ACAGTCTCAAAAGTTTTTATTTCTTTTCCTTGTGCTTACGTATAACGGGC
CTACAAATCCTTGATTCAGAGTTTTCCATTATTAAGCTGCGCAAATAAAA
TTTTAATTCATTCTGAAAAGGTTGGCGAACACTGTAACATCAAAAGCTTC
TTACCTTACCTTTCTCTTTTTAAGCCTTTGGAAAATCTTCATGACGCCAT
GGTTACGCCCCAATCACAAGAGAGAGCGCCCTGGTGGCGTGAATTATCAG
ATCCAGTCGATGCAGGGTCAAAATCTGATCTTATTGTTCAAAGCAAGCTA
TAAATCGTAAAGTTTACGTTTGGGATAGTTTTACGAACCTACTTTTTTTT
AAATCTTCTGAAACACATATCAGGAATACACGGATTATATCGGTACAGTC
AAAACATGTGATTACTCGAAAAAGTTCACGTGATTTTATTCCCATGTTGC
TTGCTTTACAACTTTTAATTACAACAGTTAATTACTTTATCAGTGTCAAT
AAATTCGAACCAATCAGAAATAAATGTCATGTAACAAGCACATAAAATTT
TCGAGTAAAAGCGTGAATTGTCTTCGGACTTAAACTTTGCAACCTGTGTA
TCCTGGTTTTATTCATTTTCCGATTAGTTTCATATTACGAATCTGGCAAA
AATGATGGACATATAAGTCTCGAGCATTTTGATTAGTTTGATTTGTAGAT
TAAATATCGGTTTTATCTATCGAAGAAAGTCGTTTTCCAAAAAGTACCTC
AAGGCTTCGCCAGGCTTTATATAAAGGGGGGTAAAATAATTTTTAAAAAT
GGTAGATTTTATTATAATTTTTTTGATTTATTTTTTATACTTTCAGTTAA
TTTTAATTCATCGTACATTATCATTTCAAGACATTTTGTCTGTATGTTAG
TGCATAGGGCTTTTCGAGACGTTTTCCTTACATATTAAAATTTCTCATTT
TGCACACTGTACTTTCAGTTTAGTTGGCAATGGAGTAATTTTCCTAATCC
AATTTATAAAAGTAGAAAATTTTTGTAACAAAATTATAAAAGAATTGTAA
ATAATATGAAGCTTTTGAAAATCAAATAATTTCGCAATAACTTGAAACAG
AATCAGGTTGTATCAGACAATTGGTGGGCTGGGTTAGGGAATGTCTCTTT
TTGATCAAAACATGCAAGGGACTTGTTAGTTTTTGTTTTTTCTAAGTGTT
GTTTCTACGCATTTAAAGTAAACGTCAAAACAAAATTGCAATCCAACGAA
ATTAAAAACACTTATCAAAAAGTAGTAATATTTCAATTAATTTATTTGAT
AGTCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048421-exon-scaffold_142-1575043694:940122..940167 | TCONS_00048421-exon-scaffold_142-1575043694:940122..940167 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1575043694:937178..937245 | TCONS_00048421-exon-scaffold_142-1575043694:937178..937245 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1575043694:936605..936691 | TCONS_00048421-exon-scaffold_142-1575043694:936605..936691 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1575043694:935260..936393 | TCONS_00048421-exon-scaffold_142-1575043694:935260..936393 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1510915933:940122..940167 | TCONS_00048421-exon-scaffold_142-1510915933:940122..940167 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1510915933:937178..937245 | TCONS_00048421-exon-scaffold_142-1510915933:937178..937245 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1510915933:936605..936691 | TCONS_00048421-exon-scaffold_142-1510915933:936605..936691 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1510915933:935260..936393 | TCONS_00048421-exon-scaffold_142-1510915933:935260..936393 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1491911889:940122..940167 | TCONS_00048421-exon-scaffold_142-1491911889:940122..940167 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1491911889:937178..937245 | TCONS_00048421-exon-scaffold_142-1491911889:937178..937245 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1491911889:936605..936691 | TCONS_00048421-exon-scaffold_142-1491911889:936605..936691 | Clytia hemisphaerica | exon |
| TCONS_00048421-exon-scaffold_142-1491911889:935260..936393 | TCONS_00048421-exon-scaffold_142-1491911889:935260..936393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:935260..940167 - |
Blast
BLAST of TCONS_00048421 vs. Swiss-Prot (Human)
Match: ACOX3 (Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 9.663e-18 Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 4 GLWIIEKNLGTFYQGGYFSGDKAGHAIKEAILDYCLRLKKDVLPLVDALAPPDWVLNSPIGHSNLKPLENLHDAMVT-PQSQERAPWWRELS--DPVDAGSKSDL 309
LW + ++ Y+GGYFSG++AG ++ A+L C +LK D + LVD +APPD+VL+SPIG ++ + +NL A++ + ERA WW E S PV KS L
Sbjct: 596 ALWSLSRHAALLYRGGYFSGEQAGEVLESAVLALCSQLKDDAVALVDVIAPPDFVLDSPIGRADGELYKNLWGAVLQESKVLERASWWPEFSVNKPVIGSLKSKL 700
The following BLAST results are available for this feature:
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