TCONS_00048444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048444
Unique NameTCONS_00048444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048444 ID=TCONS_00048444|Name=TCONS_00048444|organism=Clytia hemisphaerica|type=transcript|length=1319bp
CTAAAAGTACatctatttggaaaaaaatactttttatctGAGAAAGCACT
ATTTGACACATTGTCAAAGGATCCACTTTTTAACAATGATTTGAATATGA
ATGATTATATGGCTTTAAAAATTGAAGATAAAAGACTTATTCATATTAAG
CGAGCACGTAGACTTTATGAGTATCAATTTATTGAGAACGGGCTTGCTAG
TGCCCTATCAAGCACCCTTTGTATGATTGGATGGCCTGGTGGAATGGTCT
TCTCATTAAATAAATCACTTTTTTCAATGACCATCTACACGTCAACTACC
AACCCTGAACCTTTGGAAATTGCTGGTAAAGCTGACCGGATGGAGATACT
GGGAGCATTTGCGTTGACAGAATTGGCTCATGGAAGTAACACAAAAGGGA
TGAAAACAACCGCACATTATGATCCAAAAACACAGgaATTTATTCTCCAT
ACACCTGACATTGAAGCTACAAAATGTTGGTCTGGCAATCTTGGCCAGTC
TGCTACACACGCACTGGTTTACGCACAACTTTACACACCAGATGGTGTGT
GCCACGGTTTGCACTCCTTTTTAGTTCAAGTGAGGAACAAAGAAAGGTTA
CCGATGCCTGGAATCACTGTTGGTGATATGGGCCATAAATTAGGTCTCAA
TGGTATGGATAATGGGTATTTGAAACTGAACAAGGTCCGTATCCCACGAA
CCAATTTGATGAATAAACAGGGTGATGTAACTCCTGAAGGAAAATATGTG
TCtcctttcaaaacaaagaacGCAAGGTTTGGTGCAGTTCTGGGAACACT
TTCTGGTGGACGTGTGGGTATCACTGGCCTGGCTACCTGTAATCTCATCA
TGGCAGTCACTATTGCTTTAAGATATTCAGTATGTCGCAAACAGTTTGGT
CCTGTGGAAGGTGGACCTGAAATTCCGGTCATCGAGTATCAAATGCAGCA
ATGGCGTTTGATTCCGTACCTGGCAGGAGCATATGTGTGGCATTCATTTG
CAGTGTGGTTCAACACACGATTCTTTGAGATCACTGTTAGAAGATATACT
GGTGTCCAATTACCACCAGATGAGGCTGCAGCGGAAGGTCGAGAAGTTCA
TGGACTTTCATGCGCAAGTAAACCTGTGGCTTCCTGGCTAGCTCGTGATG
GAATTCAAGAAGCCAGAGAAGCTTGTGGAGGGCATGGCTACTTAGCTGTC
AATCGTATTGGAGATCTGCGTAATACCAACGATCCTAATTGCACTTATGA
AGGTGATAACAATTGTATCCTCATGCAGACATCCAATTACCTTTTATCCA
TCTACAAAGACatttgtaa
Run BLAST on NCBI

transcript from alignment at scaffold_142:942385..954065-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048444 ID=TCONS_00048444|Name=TCONS_00048444|organism=Clytia hemisphaerica|type=transcript|length=11681bp|location=Sequence derived from alignment at scaffold_142:942385..954065- (Clytia hemisphaerica)
CTAAAAGTACATCTATTTGGAAAAAAATACTTTTTATCTGAGAAAGCACT
ATTTGACACATTGTCAAAGGATCCACTTTTTAACAATGATTTGAATATGA
ATGATTATATGGCTTTAAAAATTGAAGATAAAAGACTTATTCATATTAAG
CGAGCACGTAGACTTTATGAGTATCAATTTATTGAGAACGGGCTTGCTAG
TGCCCTATCAAGCACCCTTTGTATGATTGGATGGCCTGGTGGAATGGTCT
TCTCATTAAATAAATCAGTAGGTTGATCTGTAATTTTGTTCCTCCCCTTT
TAGGTTTAAACATCTACTGTGAGATAGGGTATCTTGCATAGCCATCAAAT
ACCTGACCAATCAAAGCAGCAAAATTTAAAAATAAATGTAGCAGTGCAAG
AACAACGCAGCTCTGCTCGCAGCTCTACTCTACCATTTTAGAATCCATAT
TTACTGTGCGAGTATTTTTGGCGAGACAGAATTGCGGGTAGATAAAACAG
TGTGGTTGGATATAAAATAATCATCCGTGATCATATATTTTTTGATAGCA
AGAATTCAGATGTTTCTCAATGGCTGCTTGACATAGTAATCTCAAACTTT
ATAATGATAATAAACATAATTATACATGACAATACTTTTATGATTAAGAT
GTATACAACACGTTTTACAACCCGTAAATTTTGTATTGTAAATCAGGTTT
GTTTTGATTTTATGTATTTTAATGACATTTGAGGGCTATGCACAATAGCC
TCCACTGATACAAGTTACCCGATCTCATGGTAACTTATTTTTTCAATTCA
TATGGTTTTTTAACTCCATTTGCTTTATATTATTAAATGTGCACTTATTC
CTTATTCCATCAGTCAATTTACAGTTAAAAAGCAGTACAGTCCAGTATCA
ATGTTAGAGCTATTAGGAACTTTGGACTTCTTTCCTTGTTACCTTTTTAA
AGTAAAAAGGAATAAATGTACGAAAAATGGGTCCCTGGGTCCTAGATAGA
AAAGGAAAACTCATCAATTGCCTTTCAAAGCTATCTCTGATCTTTTAGGC
AAAACCAAAAAGGATTGTTTAGAAAATGGACAAAATGGATGGTTTAAAAG
TACATCTATTTGGGAAAAAATACTTTTTATCTGAGAAAGCACTATTTGAC
ACATTGTCAAAGGATCCACTTTTTAACAATGATTTGAATATAAACAATTA
TATGGCTTTAAAAATTGAAGATAAAAGACTAATGCATATTAAGCGAGCAC
GTAGACTTCACGAGTATGAATTTATTGAGAATGGGCTTGCCAGTTCCATG
ACAAACACCCTTAGCATGATTGGGTGGCCTGGTGGAATGGTCTTCTCAGC
GAATAAATCAGTAGGTTAATCTGTACTTTTGTTCCTCATCTTTTTGGTTT
GAACATCTAACTTAATATTTGATTTCTTTGGTTTTAAATGCTACTCACTT
TATATCGAGTGTGAACTTACTCTTATTTTGCCAATACTAATGAATTTATA
CACCCTTTAAAAGATAATTCATAGTTTACATCCCCTTTTTTAACGAGGAA
TGCATGCCAAATTTTTTAGGGGCCTTTGTATGATGTACTAAGATTTGCCT
AAAAAACTATGGGATGGGAATGTAGGGGGGGAGACAAATGAGAAAGGGGA
ATCGCAAATTTTGTTTAACTTAATCATATACAAATGGTTACAGTATGTTA
CCAAGTAAGAGTATGTACCATCAAAACACAAAAGTGTATCATGTTATTAA
AAACGCTAGTAATATATATTGTTACCTTATTACACAAATATTACTACTAG
GCAAGTATTTTAACAGCCTTGAAATTTGCACAATCTGAAATTTACACAAA
TTTTTCTGCTTTATCAAGGAAACAGCTGCTTGTTTTAATTAAAGGGGTTT
TTATTAACACAAAATTTTTCAATCCGTGTTAATAAAATGACTGTAGTATT
TGTGGTATTAAATTTTGCGGGCTACAAAATTTTGCGAGTACTTAAAAAAT
TTTGCGATTTTTAAGGTCAAATTTTGCGAAATTTAATATATTGGGTGCAC
CAGAAAAAAGTATACAAGTTTGTCAAGATATTGTAGGCTTTAGTATGAGA
ATTTTTATTTGATTTTTTTTTCATTGCGTAGGGGAAAACCTAACTTAAAT
TTTGGTATATAAAACTTCAAAATCAGTTCAGTCAATCAGAAGTTATGATA
AAAAAACTGAAAATCTTGACTTACCCAAAAATTCGAAATTCATTAAAAAC
AGTGAACAAAATTTGAATGTACAATTACCACACACTATTATATTAGGTAT
TTCGATAAAATGGCATTTTCTAAGCATTTTTTTTGGTAAAATATTGGTCT
TTAAGCTTTCCTCGACTCATTGGATATTAAAATAATTCACTTAAGCCTCA
AAATTAAAATCAGGGCGTCGAAGTATAGATTTGGTGGCATTTTGAAAGTT
TCACTTGAAAATTGGATGTTTTTTTTTAGTTTTTAGCTATTTACAGTAGC
AAGAATTTTCGAATTTTTATGAAAATTTTTTACTTTCTCAGCAAAGTTTG
AGCTTCAGCGACCTTAAATCAACCATTTTACAGTTACCAATTGACAATTT
TATTCATTTATGGCTATTTAACTGTTTAAAGTGATAATAAACAGAGAGAA
AATTTTGATCCTTGTTTCTAATGAATTTTGAATTTTTGGGTATATATAAG
TCAGTTTTTTTAGCATAACTTTTGATTGACTGAACCTATTTTAAAGTTTT
ATATACCAAATTTAAGTTTGATTTTCCCCTATACAATGAAAAAAGAATCA
AATAAAAATTCTCATCCTAAAGCCTACAATATCTTGACAAACTTGTATAC
TTTTTTCTGGCGCACCCGGTATACCATTTAAATTTTTCAAAAATACCAAA
TCACGAAATTAAATACACGCAAAATATTTTGCATTAAGCCCGAGAATCTA
AAATACTTATTTTTTACTATTCTTGGTATGTTAACACCCAATACGTTGTG
TTGCAAGCAAAATCTGTTATTTTCTTGCTTTATTTCCCACTATTTGAAAA
TGCTCAATTAAGTGAATCGCAAAATTTGATACACGCAAAAATTTCCTTGA
AAAAAATTCACAAATCGCAAAATTTTGTAACCTGCACAATTTAATAGCAA
TAAGGTATATTGTGAAATTGTTGACTCTTGACTGTATATATTTTATACTT
TTTGATCACTTTGTTAGCGCATAGAGTGAGGTTAGATTTTCTGCAAAAAA
ATTGGGGGGGGGATGGTTATATATGTGGGGATAAAATAAACCAAGAGGGG
TCCATACCCTCTGCAAACTATACAATTAGTGCACACTAAGCCAGACTTAT
AACGTAGAGTTATTCCAATACACTCCTCTTTTTAGAATAAAATATTAAAA
TGAATAAAGAGAAACTTGCTAAGTTTATAACTTCTGAAAAATTCTACCGA
GAAACAGAATCAGTTTACAAAACTTTGGAAAATGATGAACTTTTCAATGA
TGGTTTGAATTACAATGATTATGCTTCAATGTCTATTGATAAAGCAAGGG
AATATTCTATTCAAAGATTGAAGCGACTTTATGAATATGGGTTTACAGGA
TTACCATATTTTCCATTACATTTTGCACTTACTGCTGTTGAGGTGGATAA
TGATACAAGGAGAGGAATTCAGTATGGAGTATGTAGCTTTGTTCATGTTA
CTTCTTCCACATTGGAGTTCTTCCAGTTAGATTGTGCATTTGAATGCAGT
AAGATTATATGATGANAGGGAATATTCTATTCAAAGACTGAAGCGACTTT
ATGAATATGGGTTTACAGGATTACCATATTTTCCATTACATTTTGCACTT
ACTGCTGTTGAGGCGGATAATGACACAAGGAGAGGAATTCAGTATGGAGT
ATGTAGCTTTGTTCATGTTACTTCTTCCATATTGAAGTTCTTCCAGTTAG
ATTGGCCATATAGTCAAGCAGTGCATTTGACTGCAGTAAAATTTTAGGAT
GAGTTTGAAAATACCTGGACCTGGCTGAGCTGAGCTGGGTCTTACAAAGT
GCCCTGGAAATTGGCAGCAAGGAGAATGCTGTGGTAACAGATGTGGCAAA
TTAGATTATGTCTTATTTGTAAATTTCGCAATAAATTTCTAACAAATTTC
AAAATTTCAAAAGGACAAAAGAGTTTTCATAAGAAAGAATCTTGTTTTTA
AAAATGAGGCCTCACACCAGCTTGTACTTCAGAAAAAATTGAATATATGT
CTCTTGAAGTTCAGTTTATTTAAATGTGTCAGTAAAATGTTGTTTTGTCT
CGGTAAATTTGATAAATGGACTTTGCTGTAAACAAACTGAATTGCCAGAG
TTTACTAAATAATGATAATGATAATATGACTATACATTACATAACAACTC
GCTATTTAGGTCAGGATTCAGAGAAATCTTTGGAAAGATTTCATTTAATA
TTTTGGTGAAAAGCTAATTTGAGGGTTAAAACTTATTGATTCACACTGTC
TACCAAGTAGGACTAAACCTTTATCCTACATGATTTTGTTACTAATGCTG
ACTTGGAATCCTCTAGTTAAGTTAATCTTTTAAGTAGTGAACAAGTAGGA
TTTTTTTCTGTTATGTAAAATGCATCCTGAATTCATATATATACCTTGTA
GATTATATCAACTTTTTATCCTAGAATATAATGCAAAGTTGTAAAAATGA
ATTCAAAAAAATTATTGACATACATTACCGATGAAAATTTTGTGCAAAAT
TTAGACATCGCTTACAAAACATTGGAAGCGGATGAACTTTTTAACAGCAA
AAAAAATCACAATGAGATTGCCAATACACCAATTCACCAGCTCAGAGTAC
AATCTATCCGAAGGACAAAACGACTTTATGAATATGGGTGGAAAAAGAAA
AACATACCTTACTTTCCCTTACATTTTGCTTTGGCTGGCATTGTAGAAGA
TACGGAAATGAGAAGAGGCATTAATGTTGGAGTAGGTTCCTTCATGTTAA
GTGTCTTGCAGTGTTAAAAATCCCCTCTTGTCAGCAAAGTATATAAAAAG
GCTTTATGTGCTAATTTGCAGTCCATTTTTTGTGTCATGTGAAAAACCAT
GCTTTGACTAAAAGCAGATATTCAATAGGTAAAAGTAGGTTATTGAGATT
TATTAACCCAAGGTGATGTAATACAAAAACCTATTGAATATTATGTTTTA
TTATAAACCTAGAGGCAAAAACAAAACTTAATTTTGTAAATCTACTATTT
AAATAGTCGAAAGATTCACATAAAACACTCCCTTATCGAACGTTCAAATG
TTCTTCTTTTTAAATGATTTTCTTAATTACTTTAAGTCATAAATTTTTTT
CAGGAAATCAACAATATATTTATTTTAATAAATTTCTTTGATTAACAAGA
GCCACAAAAAATCAAATTTTGAAAGCAAAATTTGAACAAAAAATCTACCG
TGGTATAATAGCCATATTAATAGGTATATCAGGAATTATTCAATGGCTTT
TTTTACCTAAAGGTACCTTAATTCCCTTAATTTTCACGCGCCTTTTATTT
TCGCGCCTCTAATTTTCGCGCCTCTAATTTTCGTGCCTTTAATTTTCGCG
CAGCTAATAAAATAAATTGTTTGCGCATCCTTTAATTTTTGCGCATCTTG
CAATTTCTGGGATATTTTCTGAGTGTTTTTGACGATTTTAAGTGAGTTTT
ACTCACTTTCAGTGTGTATTCAAGCTAGATTTTACATCCCAGAGGCATAT
TTACCATGAATCGAGATCCCATTTTATTAAAAGAGTCTTAAGATGAGATT
TCTACACGTTCAGAACGATTACTAGTTCGCGAACCCTTTAATTTTCACGC
ACCCAAGCCAAATGCGCCAAAATGGGCCTATTTCGCGCGCCTTTTGTAAA
AGGGGCGCGAAAATTAATGGAATTAAGGTATATAATAATAATGGTTATAG
GCAATTAATCCAATTGGAATTTCAATCAAGGGCTTACTATACTTTTAACT
TTTAAATGTAGATTATACACATATAAAAGAAATGATATCAAATATAAAAA
ACACAAGAGAGCTATCAATTTATGTGGCAACAAAGAAATATGTTGAAGGG
ATCGAAAATATCCACAACACATTGCAAAAAGATGATCTATTTAATAATGG
AATGAATTATAATGATTATGCCTCTTTAACTTTGGATGAGTTGAGAGATT
TATGCACTAAAAGGAATAGGCGTACAATATCTTATGGCTTTCCACGTGAG
GCAAATATAGGAACAGCCCATCAAGCCATTCATCATGGGGATTTGAAAAG
AGGCATAAATTCTGGTGTATGTCTTCAAAAGTTTTATGTCTTCTGATTTT
AATGATAATGACAATAAAATAGTCTTTTGCTGATGTTAACTAACTTTTTT
ATTTTCCCTATAGAACATACTAAACAAAAAGTATAAGTCAAATAAAAATA
AAAAGAATTTATTAAAATGGATAAACTCAAACTAAGAAGATTTGTTAGTG
GCGAATATGGCATTTGTTGTGATAAACTTTTTGATACCCTTGTAAAAGAT
CCTAGATTTAATACCGGTTTAACCTACAATGATTACGAAAACATGCCCTT
GCATGAGTATCGGTTGATACAGAATAAAAGAGCAAGGGCATTGGCGGAAT
ATCAGTTTATTGAGATTGAGAATGTTATTGATAATCCGGTCAGCCCGGCT
GCTTACTGTGATGCAGCCTCCTTCATTGAATGGAGTGCTGCTATGAAATA
TTTTCTTAATAGATCAGTACGTCAAATTTTTGATAAAAATTGATTAAATT
TTGCACCAAATACATAAACAACTACTGTAACTTGAGCATTCAAATTTTAT
ATGCATCAAATATTTCTAATTTTCAAACATTTAAATAAATAAAATTATAA
TTTAAAAGATGTTTTGCAGTCTTTTGCACTCTTTATTATTTAGTAATCAT
ATTAAATATTGTGCCTTTACAGCAGCTCTATATCGACCCCCCCCTAAAGT
AAATTAATGTTTTTTTACANTAAAGATGTTTTGCACTCTTTTGCACTCTT
TATTATTTAGTAATCATATTAAATATTGTGCCTTTACAGCAGCTCTATAT
CGACCCCCCCTAAAGTAAATTAAAGTTTTTTTACAAAGCTCTTTATCAAA
AATTATCATCTCTACTTTCTCCAGCTTTTTTCAATGACCATCTACACGTC
AACTACCAACCCTGAACCTTTGGAAATTGCTGGTAAAGCTGACCGGATGG
AGGTACCAATTTAACAAACATTGATTTATTCAACTTTAGTTTTCTTTCCA
TTGATTGGCAATATTTTAATGCAACAAATTTTCATGTCAGCCAATTAATA
AAATATGTATCAGTTATGAGAATATGAGAATTACATTGGGCTAGCTAAAA
AGTGGAGAAAAAAATTATTCTACTAAGTTTATTATTTTCATCTGTCCTTC
TTTTTTTGAGATACTGGGAGCATTTGCGTTGACAGAATTGGCTCATGGAA
GTAACACAAAAGGGATGAAAACAACCGCACATTATGATCCAAAAACACAG
GTATAAATTTGTTTTTGTCTATTTCATCTCTTGTTTATCATAGTTGATCG
GTTGAGGCTCGATGTAGCATTACGTACTCTTCCTTCTTGTTAGGCAATGA
TTGAACCATCTTCAGAACTTTTATCAACACTCTTTTAAAGGAAGATATTT
TGATTGACGTGTTGTCATTTTTTTCTTTAGGAATTTATTCTCCATACACC
TGACATTGAAGCTACAAAATGTTGGTCTGGCAATCTTGGCCAGTCTGCTA
CACACGCACTGGTTTACGCACAACTTTACACACCAGATGGTGTGTGCCAC
GGTTTGCACTCCTTTTTAGTTCAAGTGAGGAACAAAGAAAGGTTACCGAT
GCCTGGAATCACTGTTGGTGATATGGGCCATAAATTAGGTCTCAATGGTA
TGGATAATGGGTAAGCTAATACTGGGATAGTTTTGAACAATTTTCCCTTT
TGACTTTTTTTGGGGTGATTTTCATGGCATTCAAACTGATTTTAACACAC
CATTTTGCAATGGTAGTAGTAAAAAGTAGATTTAAACTTTTATAAAAAAT
ACCATTATCTTACTTAGTGCATCGTGTGACTGTTTCAATTTGTTGTGAAT
TTCTATGTAAAGATGCGAGACTAAACTTAAACTTTTTTCTCTCTCTATAG
GTATTTGAAACTGAACAAGGTCCGTATCCCACGAACCAATTTGATGAATA
AACAGGGTGATGTAACTCCTGAAGGAAAATATGTGTCTCCTTTCAAAACA
AAGAACGCAAGGTTTGGTGCAGTTCTGGGAACACTTTCTGGTGGACGTGT
GGGTATCACTGGCCTGGCTACCTGTAATCTCATCATGGCAGTCACTATTG
CTTTAAGGTGAACAATCTATTTCGCTCGTTAAATTGCGAGAAGTGGTTAC
ATAGGCAAAAGTNGCTCTTGTTTATCATAGTTGATCGGTTGAGGCTCGAT
GTAGCATTACGTACTCTTCCTTCTTGTTAGGCAATAATTGAACCATCTTC
AGAACTTTTATCAACACTCTTTTAAAGGAAGATATTTTGATTGACGTGTT
GTCATTTTTTTCTTTAGGAATTTATTCTCCATACACCTGACATTGAAGCT
ACAAAATGTTGGTCTGGCAATCTTGGCCAGTCTGCTACACACGCACTGGT
TTACGCACAACTTTACACACCAGATGGTGTGTGCCACGGTTTGCACTCCT
TTTTAGTTCAAGTGAGGAACAAAGAAAGGTTACCGATGCCTGGAATCACT
GTTGGTGATATGGGCCATAAATTAGGTCTCAATGGTATGGATAATGGGTA
AGCTAATACTGGGATAGTTTTGAACAATTTTCCCTTTTGACTTTTTTTGG
GGTGATTTTCATGGCATTCAAACTGATTTTAACACACCATTTTGCAATGG
TAGTAGTAAAAAGTAGATTTAAACTTTTATAAAAAATACCATTATCTTAC
TTAGTGCATCGTGTGACTGCTTCAATTTGTTGTGAATTTCTATGTAAAGA
TGCGAGACTAAACTTAAACTTTTTTCTCTCTCTCTAGGTATTTGAAACTG
AACAAGGTCCGTATCCCACGAACCAATTTGATGAATAAACAGGGTGATGT
AACTCCTGAAGGAAAATATGTGTCTCCTTTCAAAACAAAGAACGCAAGGT
TTGGTGCAGTTCTGGGAACACTTTCTGGTGGACGTGTGGGTATCACTGGC
CTGGCTACCTGTAATCTCATCATGGCAGTCACTATTGCTTTAAGGTGAAC
AATCTATTTCGCTCGTTAAATTGCGAGAAGTGGTTACATAGGCAAAAGTT
CTTAAAATTAATATTAATTCGAAACTTTTTATTTACATAATTTGTTTTTT
ATCTGCTATATTAATTCATTAGCTACAAAAAATCTTGTGACTAGGATTCA
AAAGCCTCTAAAAGATATATCCAATTATGCAGGGACAGTGGTTCATCTAT
CTGTTGTTGTTTATGTTTTAGATATTCAGTATGTCGCAAACAGTTTGGTC
CTGTGGAAGGTGGACCTGAAATTCCGGTCATCGAGTATCAAATGCAGGTT
AGAGTATAGTTCTATGCATTTGTATTCTGCGTATGTAATACTCACATATA
TACAATTTATTTATAGCGTGGTCGCTTGGCATTATTTCTAGGGAAAAAAT
ACAATCATGCTAAAATTTTACAGACTTTTTCTATAGTATCATCTAATCAT
AGAAAAGAATTGCCCTCTATACCCATTGGTGAGCATTCTTTTTAAGGCCA
TTTTTAAGTGATGACGTCATTATTCACAATTCAATTAATTTTGCTCTCAA
AAATAAACCCAATAATTCATTCTGACAAATATTTCATAATTCCAAATCCA
TACAACGCCAATTAAGGCACAGTGCTTTATTTCCATGTTAAGAAAAATTG
GAAATATTTTTTCATCACCTTATTAGCAATGGCGTTTGATTCCGTACCTG
GCAGGAGCATATGTGTGGCATTCATTTGCAGTGTGGTTCAACACACGATT
CTTTGAGATCACTGTTAGAAGATATACTGGTGTCCAATTACCACCAGATG
AGGCTGTAAGTTGAATGGATTTACAATGAAGTTAGTTTGAAGGTCAATCA
TCAATTATTTAAGCAATGATTGAATATTTCAGTTTTTTTTAATAATCACA
AACTTTAACGTTCATATTAGAGAACGATTAGACCAAGCTACAAAAGGATT
GTCAAAAATGAATAGTTCTGTACATGAATCTTTTTTTAAATAAATTGTTA
AAACCAGAGTCGTTCTGTTTCTTTTAACTTTAAGTTTTTAACTTCCTCTC
TCCGATTTTAAACACCCCTCTGAAACTATTCTTTTTCTTTTTACTTGTAG
GCAGCGGAAGGTCGAGAAGTTCATGGACTTTCATGCGCAAGTAAACCTGT
GGCTTCCTGGCTAGCTCGTGATGGAATTCAAGAAGCCAGAGAAGCTTGTG
GAGGGCATGGCTACTTAGCTGGTGAGTTATTTATTATTAACATAGTGTCC
TTCAGGGTCTCTTCCCCCTATGCCTAGAATGAAAATTTTCCATTCCCCTC
CCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
TGGCTTCAAAAAAAATTCTTTCCCCCCTATACGTCCTTTTGACCTCAAAA
CCCATCCCCCCTGAATCCAGGGGGGGAGGACACTATGTAAGTTCTAGTCT
GTTTCACGTTGAAGGTGGTGTAAAATATAAAAACATTTTTGAATAAAAAC
AAATTACAAAAAAATATTCCTACGATACATTACCATGAATAAGGACCAAC
TAATTAAACTCGTCCCAAACCTTCTTTACAATTATCCATCTAAACCTCCT
TTCGTTATAGTCAATCGTATTGGAGATCTGCGTAATACCAACGATCCTAA
TTGCACTTATGAAGGTGATAACAATTGTATCCTCATGCAGACATCCAATT
ACCTTTTATCCATCTACAAAGACATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030800XLOC_030800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048444-exon-scaffold_142-1575043694:953799..954065TCONS_00048444-exon-scaffold_142-1575043694:953799..954065Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:946814..946891TCONS_00048444-exon-scaffold_142-1575043694:946814..946891Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:946516..946605TCONS_00048444-exon-scaffold_142-1575043694:946516..946605Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:946128..946335TCONS_00048444-exon-scaffold_142-1575043694:946128..946335Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:945219..945240TCONS_00048444-exon-scaffold_142-1575043694:945219..945240Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:944772..944978TCONS_00048444-exon-scaffold_142-1575043694:944772..944978Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:944469..944544TCONS_00048444-exon-scaffold_142-1575043694:944469..944544Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:943961..944089TCONS_00048444-exon-scaffold_142-1575043694:943961..944089Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:943545..943665TCONS_00048444-exon-scaffold_142-1575043694:943545..943665Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1575043694:942385..942505TCONS_00048444-exon-scaffold_142-1575043694:942385..942505Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:953799..954065TCONS_00048444-exon-scaffold_142-1510915933:953799..954065Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:946814..946891TCONS_00048444-exon-scaffold_142-1510915933:946814..946891Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:946516..946605TCONS_00048444-exon-scaffold_142-1510915933:946516..946605Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:946128..946335TCONS_00048444-exon-scaffold_142-1510915933:946128..946335Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:945219..945240TCONS_00048444-exon-scaffold_142-1510915933:945219..945240Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:944772..944978TCONS_00048444-exon-scaffold_142-1510915933:944772..944978Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:944469..944544TCONS_00048444-exon-scaffold_142-1510915933:944469..944544Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:943961..944089TCONS_00048444-exon-scaffold_142-1510915933:943961..944089Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:943545..943665TCONS_00048444-exon-scaffold_142-1510915933:943545..943665Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1510915933:942385..942505TCONS_00048444-exon-scaffold_142-1510915933:942385..942505Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:953799..954065TCONS_00048444-exon-scaffold_142-1491911889:953799..954065Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:946814..946891TCONS_00048444-exon-scaffold_142-1491911889:946814..946891Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:946516..946605TCONS_00048444-exon-scaffold_142-1491911889:946516..946605Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:946128..946335TCONS_00048444-exon-scaffold_142-1491911889:946128..946335Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:945219..945240TCONS_00048444-exon-scaffold_142-1491911889:945219..945240Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:944772..944978TCONS_00048444-exon-scaffold_142-1491911889:944772..944978Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:944469..944544TCONS_00048444-exon-scaffold_142-1491911889:944469..944544Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:943961..944089TCONS_00048444-exon-scaffold_142-1491911889:943961..944089Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:943545..943665TCONS_00048444-exon-scaffold_142-1491911889:943545..943665Clytia hemisphaericaexon
TCONS_00048444-exon-scaffold_142-1491911889:942385..942505TCONS_00048444-exon-scaffold_142-1491911889:942385..942505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:942385..954065 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5639	11.3454	17.0959	17.0409	5.08507	5.3572	8.61467	12.2584	11.3965	9.95063	9.95446	8.26261	8.22252	8.56114	9.25668	15.5369	19.8637	14.6628	4.7095	9.9465	8.54504	11.0699	7.32207	10.7873	2.12492	7.7973	5.26377	4.94292	13.9467	12.0564
Blast
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BLAST of TCONS_00048444 vs. Swiss-Prot (Human)
Match: ACOX3 (Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2)

HSP 1 Score: 432.95 bits (1112), Expect = 1.202e-144
Identity = 223/432 (51.62%), Postives = 284/432 (65.74%), Query Frame = 1 
Query:   40 EKALFDTLSKDPLFNNDLNMNDYMALKIEDKRLIHIKRARRLYEYQF--IENGLAS-----ALSSTLCMIGWPGGMVFSLNKSLFSMTIYTSTTNPEPLEIAGKADRMEILGAFALTELAHGSNTKGMKTTAHYDPKTQEFILHTPDIEATKCWSGNLGQSATHALVYAQLYTPDGVCHGLHSFLVQVRN-KERLPMPGITVGDMGHKLGLNGMDNGYLKLNKVRIPRTNLMNKQGDVTPEGKYVSPFKTKNARFGAVLGTLSGGRVGITGLATCNLIMAVTIALRYSVCRKQFGPVEGGPEIPVIEYQMQQWRLIPYLAGAYVWHSFAVWFNTRFFEITVRRYTGVQLPPDEAAAE---GREVHGLSCASKPVASWLARDGIQEAREACGGHGYLAVNRIGDLRNTNDPNCTYEGDNNCILMQTSNYLLSI 1302
            +K +F  L  DPLF      +    L +E  R ++  R +R++EY F  +E+   S     AL   L M        + L+  +F   +Y+S +    L    K  RMEI G FALTEL+HGSNTK ++TTAHYDP T+EFI+H+PD EA K W GN+G++ATHA+V+A+L  P   CHGLH F+VQ+R+ K  LPMPG+ VGD+G KLG NG+DNG+   +KVR+PR +L+N+ GDVTPEG YVSPFK    RFGA LG+LS GRV I  LA  NL +AV IALR+S  R+QFGP E   EIPV+EY MQQWRL+PYLA  Y    F+        E+     +G     D +A +   GRE+H L+ ASKP+ASW  + GIQE REACGGHGYLA+NR+G LR+ NDPNCTYEGDNN +L QTSNYLL +
Sbjct:   48 KKTIFSALENDPLFARSPGAD----LSLEKYRELNFLRCKRIFEYDFLSVEDMFKSPLKVPALIQCLGMYDSSLAAKYLLHSLVFGSAVYSSGSERH-LTYIQKIFRMEIFGCFALTELSHGSNTKAIRTTAHYDPATEEFIIHSPDFEAAKFWVGNMGKTATHAVVFAKLCVPGDQCHGLHPFIVQIRDPKTLLPMPGVMVGDIGKKLGQNGLDNGFAMFHKVRVPRQSLLNRMGDVTPEGTYVSPFKDVRQRFGASLGSLSSGRVSIVSLAILNLKLAVAIALRFSATRRQFGPTE-EEEIPVLEYPMQQWRLLPYLAAVYALDHFSKSLFLDLVELQRGLASG-----DRSARQAELGREIHALASASKPLASWTTQQGIQECREACGGHGYLAMNRLGVLRDDNDPNCTYEGDNNILLQQTSNYLLGL 468
The following BLAST results are available for this feature:
BLAST of TCONS_00048444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACOX31.202e-14451.62Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapi... [more]
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