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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048461 ID=TCONS_00048461|Name=TCONS_00048461|organism=Clytia hemisphaerica|type=transcript|length=1548bp
ACCCTTTTCATTCTCTTTTGAAAGAAGAGATACAATAACTGCTTattaga
tttgaaaaaaatgtcgaaaaaaaTACTGCTTTTTGTCTCCTAAAAACCTA
CAATTAGTGAAAAAAATATCCCTGTAATTTCCTTAGTGATCACCttgatt
ttccagaaaaattttatacAGTGGTATTGACGTATTTTTTCACAAACCCC
CTGAATGTTTTGAATAATAACAAATCATTCCCTTCAAATGTTAAGATGAA
CCCCctagaagttgattttttttgaaaggggCTGGAAACAGCTATTGATT
TCAGCATATGAAGAAAGAACCCCTTGGGAACCTTGGAAATCTTAAATGTC
CTCTTGTAAATCTAAAAGAACAAAATCTCCTTGGAATTGATAGATTATAG
ATCACCACCCCTGGAAAaattcgtcaatacccctgtattgTTTAGAAATG
GATAGCCTATTcactattttttgtttttgatgtttaaattttataaattc
aGTGGAAAATTAAATTAACATCACTTCATTGCTCCAAAAAACCAACAGCT
CAAGGAAAAAACATCTCTAAACGTTGGTAAAGTTTCTGTGATCACTCTCT
TGTCAGACCAATAGATCACCAAGCGATTTTGTATTGGTTCTACGTTCatc
atttttgttttatcattAACATAGAATCTAGACAGACCACCACATTCTTC
CAGATCATATTTCTCATTTGGGTAATACACCAGAGTTAAGATACGTCCAT
TATCTATGGGATTATCAATATGAGGTAAATAGCCACCAGTATTTTTGGGG
AAACAGGAGATTTGTATTTTAGAACGATGCGTAATCTTCACACGTTTCTT
TGTAGAACTTCTTGATCTGTTTTCACCAGGTTTGGCATCTATACCAGTAC
TGTTGTAATCGTCCAAAATGTCTTTGATCAGTTTTGTGAAAGCACGATTT
ACTTCAGAATAACATTCACCGAAATTCTCCGTCCCTTTTACCCAACATGT
TTTATCAAAACGAAATTTCTTCGAAGGTGGGGTCATATTTAACGGTTCAG
TAAAAAGTCCTGGTATATTTTGGTATAAAAATTTGGTTACTTTAGTAATC
TTCATTGACTGTTCTTTGCTAAAAAAATTATCCAATATACATATACCTGT
ATCGTTTAACGCTTCCACTATGCTTATTGTTCTTAATTCCTCATCGATTG
AGTTCAGGTCAAATCCAGATATTGTAGAATCGGTTGGGGTATTAGCCCTC
TCCCAAACATGATCATTGGTAGGGCCAGTCGAAGATGAATCTTTTGATGG
TTTTGTTTCGTTTACTGTTTTAATACGCCTTAGTGACGAGCTGAAGCCTT
CCATTTAAAATTTTACTATCTGTAGACTCAACCAGAAGGTTAAAAGTTTT
CTATTCCCTGGTCCCAAACCTACAGTTACGTAAATCACACTGAGGATATT
TTCGACAATAAACTTAAAAAGAAGCACCAAAATATGTAGAAACTATAGAA
AAAATGAGTGAGAAAAGAATTTAATTCGTgcacgtattcacgcaaaac Run BLAST on NCBI protein sequence of TCONS_00048461-protein >TCONS_00048461-protein ID=TCONS_00048461-protein|Name=TCONS_00048461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MEGFSSSLRRIKTVNETKPSKDSSSTGPTNDHVWERANTPTDSTISGFDL
NSIDEELRTISIVEALNDTGICILDNFFSKEQSMKITKVTKFLYQNIPGL
FTEPLNMTPPSKKFRFDKTCWVKGTENFGECYSEVNRAFTKLIKDILDDY
NSTGIDAKPGENRSRSSTKKRVKITHRSKIQISCFPKNTGGYLPHIDNPI
DNGRILTLVYYPNEKYDLEECGGLSRFYVNDKTKMMNVEPIQNRLVIYWS
DKRVITETLPTFRDVFSLSCWFFGAMK Run BLAST on NCBI transcript from alignment at scaffold_142:224868..226415 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048461 ID=TCONS_00048461|Name=TCONS_00048461|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at scaffold_142:224868..226415 (Clytia hemisphaerica)
gttttgcgtgaatacgtgcACGAATTAAATTCTTTTCTCACTCATTTTTT
CTATAGTTTCTACATATTTTGGTGCTTCTTTTTAAGTTTATTGTCGAAAA
TATCCTCAGTGTGATTTACGTAACTGTAGGTTTGGGACCAGGGAATAGAA
AACTTTTAACCTTCTGGTTGAGTCTACAGATAGTAAAATTTTAAATGGAA
GGCTTCAGCTCGTCACTAAGGCGTATTAAAACAGTAAACGAAACAAAACC
ATCAAAAGATTCATCTTCGACTGGCCCTACCAATGATCATGTTTGGGAGA
GGGCTAATACCCCAACCGATTCTACAATATCTGGATTTGACCTGAACTCA
ATCGATGAGGAATTAAGAACAATAAGCATAGTGGAAGCGTTAAACGATAC
AGGTATATGTATATTGGATAATTTTTTTAGCAAAGAACAGTCAATGAAGA
TTACTAAAGTAACCAAATTTTTATACCAAAATATACCAGGACTTTTTACT
GAACCGTTAAATATGACCCCACCTTCGAAGAAATTTCGTTTTGATAAAAC
ATGTTGGGTAAAAGGGACGGAGAATTTCGGTGAATGTTATTCTGAAGTAA
ATCGTGCTTTCACAAAACTGATCAAAGACATTTTGGACGATTACAACAGT
ACTGGTATAGATGCCAAACCTGGTGAAAACAGATCAAGAAGTTCTACAAA
GAAACGTGTGAAGATTACGCATCGTTCTAAAATACAAATCTCCTGTTTCC
CCAAAAATACTGGTGGCTATTTACCTCATATTGATAATCCCATAGATAAT
GGACGTATCTTAACTCTGGTGTATTACCCAAATGAGAAATATGATCTGGA
AGAATGTGGTGGTCTGTCTAGATTCTATGTTaatgataaaacaaaaatga
tGAACGTAGAACCAATACAAAATCGCTTGGTGATCTATTGGTCTGACAAG
AGAGTGATCACAGAAACTTTACCAACGTTTAGAGATGTTTTTTCCTTGAG
CTGTTGGTTTTTTGGAGCAATGAAGTGATGTTAATTTAATTTTCCACtga
atttataaaatttaaacatcaaaaacaaaaaatagtgAATAGGCTATCCA
TTTCTAAAcaatacaggggtattgacgaattTTTCCAGGGGTGGTGATCT
ATAATCTATCAATTCCAAGGAGATTTTGTTCTTTTAGATTTACAAGAGGA
CATTTAAGATTTCCAAGGTTCCCAAGGGGTTCTTTCTTCATATGCTGAAA
TCAATAGCTGTTTCCAGcccctttcaaaaaaaatcaacttctagGGGGTT
CATCTTAACATTTGAAGGGAATGATTTGTTATTATTCAAAACATTCAGGG
GGTTTGTGAAAAAATACGTCAATACCACTgtataaaatttttctggaaaa
tcaaGGTGATCACTAAGGAAATTACAGGGATATTTTTTTCACTAATTGTA
GGTTTTTAGGAGACAAAAAGCAGTAtttttttcgacatttttttcaaatc
taatAAGCAGTTATTGTATCTCTTCTTTCAAAAGAGAATGAAAAGGGT Coding sequence (CDS) from alignment at scaffold_142:224868..226415 >TCONS_00048461 ID=TCONS_00048461|Name=TCONS_00048461|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_142:224868..226415 (Clytia hemisphaerica)
ATGGAAGGCTTCAGCTCGTCACTAAGGCGTATTAAAACAGTAAACGAAAC
AAAACCATCAAAAGATTCATCTTCGACTGGCCCTACCAATGATCATGTTT
GGGAGAGGGCTAATACCCCAACCGATTCTACAATATCTGGATTTGACCTG
AACTCAATCGATGAGGAATTAAGAACAATAAGCATAGTGGAAGCGTTAAA
CGATACAGGTATATGTATATTGGATAATTTTTTTAGCAAAGAACAGTCAA
TGAAGATTACTAAAGTAACCAAATTTTTATACCAAAATATACCAGGACTT
TTTACTGAACCGTTAAATATGACCCCACCTTCGAAGAAATTTCGTTTTGA
TAAAACATGTTGGGTAAAAGGGACGGAGAATTTCGGTGAATGTTATTCTG
AAGTAAATCGTGCTTTCACAAAACTGATCAAAGACATTTTGGACGATTAC
AACAGTACTGGTATAGATGCCAAACCTGGTGAAAACAGATCAAGAAGTTC
TACAAAGAAACGTGTGAAGATTACGCATCGTTCTAAAATACAAATCTCCT
GTTTCCCCAAAAATACTGGTGGCTATTTACCTCATATTGATAATCCCATA
GATAATGGACGTATCTTAACTCTGGTGTATTACCCAAATGAGAAATATGA
TCTGGAAGAATGTGGTGGTCTGTCTAGATTCTATGTTaatgataaaacaa
aaatgatGAACGTAGAACCAATACAAAATCGCTTGGTGATCTATTGGTCT
GACAAGAGAGTGATCACAGAAACTTTACCAACGTTTAGAGATGTTTTTTC
CTTGAGCTGTTGGTTTTTTGGAGCAATGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048461-exon-scaffold_142-1491911889:224868..226415 | TCONS_00048461-exon-scaffold_142-1491911889:224868..226415 | Clytia hemisphaerica | exon |
| TCONS_00048461-exon-scaffold_142-1510915933:224868..226415 | TCONS_00048461-exon-scaffold_142-1510915933:224868..226415 | Clytia hemisphaerica | exon |
| TCONS_00048461-exon-scaffold_142-1575043694:224868..226415 | TCONS_00048461-exon-scaffold_142-1575043694:224868..226415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:224868..226415 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006620 | Pro_4_hyd_alph |
| IPR005123 | Oxoglu/Fe-dep_dioxygenase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0031418 | L-ascorbic acid binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0031418 |
L-ascorbic acid binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00048461 vs. Swiss-Prot (Human)
Match: EGLN1 (Egl nine homolog 1 OS=Homo sapiens GN=EGLN1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.745e-29 Identity = 76/274 (27.74%), Postives = 126/274 (45.99%), Query Frame = -3
Query: 530 ETKPSKDS----SSTGPTNDHVWERANTPTDSTISGFDLNSIDE-------ELRTISIVEALNDTGICILDNFFSKEQSMKITKVTKFLYQNIPGLFTEPL---NMTPPSKKFRFDKTCWVKGTENFGECYSEVNRAFTKLIKDILDDYNSTGIDAKPGENRSRSSTKKRVKITHRSKIQISCFPKNTGGYLPHIDNPIDNGRILTLVYYPNEKYDLEECGGLSRFYVNDKTKMMNVEPIQNRLVIYWSDKRVITETLPTFRDVFSLSCWFFGA 1309
E +P K+ SS +++ +NTP D+ G L + +L IV +N GIC++D+F KE +I + L+ G FT+ + SK R DK W++G E E + + LI+ S KI R+K ++C+P N GY+ H+DNP +GR +T +YY N+ +D + GG+ R + K + ++EP +RL+ +WSD+R E P + ++++ W+F A
Sbjct: 141 EAEPGKEEPPARSSLFQEKANLYPPSNTPGDALSPGGGLRPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDT--GKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGS-------------------YKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDA 393
The following BLAST results are available for this feature:
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