|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048527 ID=TCONS_00048527|Name=TCONS_00048527|organism=Clytia hemisphaerica|type=transcript|length=2553bpRun BLAST on NCBI protein sequence of TCONS_00048527-protein >TCONS_00048527-protein ID=TCONS_00048527-protein|Name=TCONS_00048527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp MMGSRQYICRCYFQRNIFLHDYKLHVTYRDEQQFKDDYKSTLDQRGCTDLRun BLAST on NCBI transcript from alignment at scaffold_143:76462..82778- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048527 ID=TCONS_00048527|Name=TCONS_00048527|organism=Clytia hemisphaerica|type=transcript|length=6317bp|location=Sequence derived from alignment at scaffold_143:76462..82778- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:76462..82778- >TCONS_00048527 ID=TCONS_00048527|Name=TCONS_00048527|organism=Clytia hemisphaerica|type=CDS|length=6210bp|location=Sequence derived from alignment at scaffold_143:76462..82778- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048527 vs. Swiss-Prot (Human)
Match: OGFD2 (2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2) HSP 1 Score: 290.041 bits (741), Expect = 2.988e-89 Identity = 161/357 (45.10%), Postives = 226/357 (63.31%), Query Frame = 1
Query: 142 LVMMGSRQYICRC--YFQRNIFLHDYKLHVTYRDEQQFKDDYKSTLDQRGCT---DLSAVIEQVHKEIKRREENGRISSERKQEIERCYKPLHSSVY-SLKEFYLSPTFLSIVEYCKQDNAVKTEVLKQLKSWKADQ-VYSLEVFTKEFCQLFLEELKHFEESDMPKGRPNTMNVTGLLLEELGFYSNLVNPLREKYLNPIARILYPDWVGEGRLDSQRAFIVSYNNCDGDSEDTATDLALHFDNAEVTLNVXXXXXXXXXXXXXXKLWKESTS-TDYRRVDHSLSHGVFHRGRQMHGAMPLETGERYNLIIWMRSSSVRNKYCPMCERTPDLVPTLGEGDGFVAPE---VHVCQLS 1179
+ +G+ ++ CRC + N+++ Y LHV +R EQQ + DY L RGC D ++ ++ +E++RR+ G+ S+ RK I Y P VY SL++ L+P FL++ EY +A +L++L++ ++ +Y + VFT FCQ LEEL+HFE+SDMPKGRPNTMN G+LL ELG L+ PLRE++L P+ +LYPD G GRLDS RAF+V Y + +L H+DNAE+TLNV+L F GG L+FG L++ T+ T+ V+H + GV HRG Q+HGA PL TGER+NL++W+R+S+VRN CPMC R PDLV G GDGF E V VC L+
Sbjct: 1 MATVGAPRHFCRCACFCTDNLYVARYGLHVRFRGEQQLRRDYGPILRSRGCVSAKDFQQLLAELEQEVERRQRLGQESAARKALIASSYHPARPEVYDSLQDAALAPEFLAVTEYSVSPDADLKGLLQRLETVSEEKRIYRVPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLMTPLRERFLQPLMALLYPD-CGGGRLDSHRAFVVKY------APGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPTALTEPLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRASAVRNSLCPMCCREPDLVDDEGFGDGFTREEPATVDVCALT 350 The following BLAST results are available for this feature:
BLAST of TCONS_00048527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.