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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048535 ID=TCONS_00048535|Name=TCONS_00048535|organism=Clytia hemisphaerica|type=transcript|length=1193bp
cttagcaaaataaaaaatgtcatcaCTTTCAAGAACCACAAATTCAGATT
CAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTG
GAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAG
CAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGATG
CTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAGA
ATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAGG
AAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGAG
GTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGTA
TCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGCG
AGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCGG
TCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTCTCAAGAATTTA
GACGACACAAAATTTAAATCACATGAGaacGAAACTTCATACATTCGCAT
AAAACAAGACAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTC
CAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATCAAAG
TCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTAGCAA
GAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGTCTTA
GTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAAAAGC
CAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAAATAG
CTGTCTATcatatgtttaaaaaaagcgAAACTTCATATTTCTAGGATTTT
TTTATCaggaaactttttttaaaccaaATTGTAAAGCACTTACATgaact
ttttttttgcatttacttgtaacaaaaatttactgctttttatttaagtt
ttcatttttatcattgtaatattttgctttttactgtggtaatttttttt
atattatgctACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACTAGAT
GGAATTAGACTTTGGCAtatgtataaaaatttgaaatacaaaC Run BLAST on NCBI transcript from alignment at scaffold_143:84471..89235- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048535 ID=TCONS_00048535|Name=TCONS_00048535|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_143:84471..89235- (Clytia hemisphaerica)
CTTAGCAAAATAAAAAATGTCATCACTTTCAAGAACCACAAATTCAGATT
CAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTG
GAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAG
CAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAAG
TATATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTAC
CTCAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTGTGCAATCTGT
TTTTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATAT
ACTGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGAT
TAATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTAA
ATAATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTGA
AGATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAAA
AACTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAAC
ATTTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTTT
ATTCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTG
ACGGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCA
TCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGG
AAGCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATC
GTATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAA
GATCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGA
TGGCACTGCGGTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTC
TCAAGAATTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACAT
TGATTGTATCAGCTCATTTTCTTTTAGGTTCTTACATTAGTTTCCATTCC
ATTCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCATT
TAATTTACTTACCTTTTANCTAGGGGCTAAAAAATCTGAAAATTTTCTGA
CCCTCGGCCCCAACCATGGTGGGGCCTACAGGTGTCACTGTATACCAAAT
TACTTTAGGTGTACAAACTTTCGCGAGCAGAAACTTTCGCAATTTTCGCG
AATTTTGGCCCTTTTCGCGAAAGTAAATGTATTCAAAAATTCTAGGAAGG
ACCATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGATAA
TTTGTAAATCTTCAAACTTTGACTATAAGACTAATAAGTCAAAGGACAAA
TGTTTTAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCATTTTTGCAT
GTGAAAATTCTCTATTCTACGTCTTGATTCGCGAAAGTTTATGCTCGCGA
AATATATTTTCATTCAATTCGCGAAAGTAAATGTCGTGAATTTCGCGATT
TTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTCGAATCTTATGCAGAA
CGACAGTACAACATAAAGCAAAAAGTGGAAACTGATGGCTCACGTATTCA
AAATTGAATGTCTTTTGTGTTGTGATGCTTTTAAAGTGTGCTGATTATCT
CATTGTTCAAATTGTTATCTTAGCAAAATAAAAAATGTCGTCACTTTCAA
GAACCACAAATTCAGATTCAAGAATCTATGTTGGTAATTTACCACAATTT
GTGCGTCAAAGAGACTTGGAGGACCATTTTGATCGATATGGTAAGGTGAG
GGGTATTGATATACACAGCAGATTTGATCCCGCTTTCGCCTTCATTGAAT
TTGAAGATTCTCGGTAAGTATATTGCTCTCTCAAGGCTTACAAGAAATAC
TTGCATTATTTCATTTACCTCAATGTGCATTTTTTCCATGAGCTTTCGCT
TTGGTTTTTGCAATCTGTTTTTTAAACTACTTTCATGCAATACATTGGGC
TAATTATTACATGGATATACTGGGATATAGGCTTACATAGCATCAAGCTG
CCTGTCATTAAAGAAGATTAATTGTGACATAAAGAAGCTCTATTTGCATA
GAAAATCTAGGGGATTAAATAATATTGGCTGGGTAGTTCAACTCAATGAG
GACACTATACTTTGTTGAAGATGTTACCCTTTTCGAAGGAATATAACAAC
CTTATTGCAAAGCTCAAAAACTGATCATCTTTTATTTCAAAATTGAGATG
CTCTTTTTCTTAGAAAACATTTGGAATTTATCCTTTTTTGCTAAATTTAT
TTATTCTGAATATTTTTTATTCAGGGATGCTGATGATGCAGTATATGGAG
AAGATGGCAAAAGGTTTGACGGAAACAGAATAAAAGTTCAATTTCCAAGA
GGAACTCCAAGAGATTCATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGG
TCGAGGTCCACCTGGAGGAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCAC
CCTCTAGAACTGATCATCGTATCATTGTATCTGGATTACCAAAATCAGGC
AGTTGGCAAGATTTAAAAGATCACATGCGAGAAGCTGGTGAAGTTGTTTA
TGCTGATGTTTATAAGGATGGCACTGCGGTCTGTGAATTCAAAAGTTCTA
GCGATATGAAATGGGCTCTCAAGAACTTAGACGACACAAAATTTAAATCA
CATGAGGTATTTACACATTGATTGTATCAGCTCATTTTCTTTTTGGTTCT
TACATTAGTTTCCATTCCATTCTCATAAAAGAAGTATTTACTACCTAGGC
TTTAAATTCCTCCTCATTTAATTTACTTACCTTTTATAAACACTTTAGAA
AATCCATTATAGTAAATTCATGTTTATCAAACCAAACCATGTGAAGATGA
TGAACAATATAAATTAGGCTGACATATTCTGTAATAGATGATACAATCAA
GCTAGACTATTATTATTTTCCAAATTAAAACAGAAAACTTTTTTATTTTG
TTACTAGCTGGGAACCTCTCTCAGTTACACAACCACATCCATCTCATTGA
TGTTGGGATAATAAAACATAAACCAGACAGGATACAAAGGAGAAAATTTC
CACAGGATCATTCCCTAAGACCTACAAGGAGCAAGCCAAATAAACAAACC
ACAACCCAGATGGTCATAAAAGGAAAACCCCTTGTCCCTCCATGAGCAAA
TCTGTAAAAGGCACACACCATGTGAAAAGCCAGAAAAAAGGAAAACCTTA
ATGCTAGATGTGAGGTCAACTATCAATCCAAGGAAATCCCAGAAGGCAAA
AAAGAAAACCCTTAATCAAAAAGGAGCAAATACTTCCAAAAACCGAAAGG
ATTTAGCTGTAAATAAGGAAGACCTATTCCAAAAACATCAGGAGTTGGAT
ACTGTACATAAATAAATAGGATTAGTTTAAGATAAATCCACAGGAGGATA
AAGCCATATTTCATTTCTTGGTAAAACTGTTTTATATATTTTTAACATTG
ATTTTTTAAATTTAGAAAATATGATCTTCTTAAGTCTTAAGATTCTATAT
TGATTAAACTCAAATTAAAATCTTCTTTTTTTTAAAACACATAGTTGCTA
TACTACCTTTTTTTAAATCAATGATTTTGAAATTAAAATTCTGTAGTTAA
TTTACTATGAAGAATTTGTAGCCTTTAGGAACTTTTAGCAATTTAACGTT
GTTTATTTCATTTTCAGAACGAAACTTCATACATTCGCATAAAACAAGAC
AAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCAAGAAGGTA
AAAATAATTTAGTAATATAGTGTTTTCAAAGTTTTCAAAGTTGTTTTCTT
CTCATAGACAGCCAAAAAAGGCAAATTCATTTATCGAAAGTCTCACGCTC
AGTCAGCTAATAATAAAATGTCTACATCATTGAAGCTTACAATATAAATT
TGAAAATATTCCTTTTTCTATAAATAGGTTGGGAAATAATTAGTTTATCT
AGCAAGGTCAGTGAAAACTTGTTGGTGTTGACACAATGTCGGTGTTAAAG
TATTAATTAAAAAAGTAAGTAACTTTAAAAAGTTAATCTCTTTTGAAAAT
GTAATAAAGATGATTATTCTTTTTAGAAGCCGCTCACCAAGGAGAAGATC
TAGATCACGCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAA
GCCGTAGCAAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAA
AAAAGCAAAAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCG
CAGTCGCAGCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAA
CGATTTTAAAACATGCAAATAGCTGTCTATCATATGTTTAAAAAAAGCGA
AACTTCATATTTCTAGGATTTTTTTATCAGGAAACTTTTTTTAAACCAAA
TTGTAAAGCACTTACATGAACTTTTTTTTTGCATTTACTTGTAACAAAAA
TTTACTGCTTTTTATTTAAGTTTTCATTTTTATCATTGTAATATTTTGCT
TTTTACTGTGGTAATTTTTTTTATATTATGCTACTATAGCTAGTAGTTTT
TAAGATTACTTTGTGACTAGATGGAATTAGACTTTGGCATATGTATAAAA
ATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048535-exon-scaffold_143-1575043694:89041..89235 | TCONS_00048535-exon-scaffold_143-1575043694:89041..89235 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1575043694:88198..88579 | TCONS_00048535-exon-scaffold_143-1575043694:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1575043694:85339..85418 | TCONS_00048535-exon-scaffold_143-1575043694:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1575043694:84471..85006 | TCONS_00048535-exon-scaffold_143-1575043694:84471..85006 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1510915933:89041..89235 | TCONS_00048535-exon-scaffold_143-1510915933:89041..89235 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1510915933:88198..88579 | TCONS_00048535-exon-scaffold_143-1510915933:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1510915933:85339..85418 | TCONS_00048535-exon-scaffold_143-1510915933:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1510915933:84471..85006 | TCONS_00048535-exon-scaffold_143-1510915933:84471..85006 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1491911889:89041..89235 | TCONS_00048535-exon-scaffold_143-1491911889:89041..89235 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1491911889:88198..88579 | TCONS_00048535-exon-scaffold_143-1491911889:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1491911889:85339..85418 | TCONS_00048535-exon-scaffold_143-1491911889:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048535-exon-scaffold_143-1491911889:84471..85006 | TCONS_00048535-exon-scaffold_143-1491911889:84471..85006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:84471..89235 - |
Blast
BLAST of TCONS_00048535 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 1.594e-54 Identity = 103/191 (53.93%), Postives = 129/191 (67.54%), Query Frame = 2
Query: 41 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHENETSYIRIKQD 610
N+D RIYVGNLP +R +D+ED F +YG +R ID+ +R P FAF+EFED RDA+DAVYG DG +DG R++V+FPR G G G G G R +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF DM +A++ LD+TKF+SHE ET+YIR+K D
Sbjct: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
The following BLAST results are available for this feature:
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