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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048562 ID=TCONS_00048562|Name=TCONS_00048562|organism=Clytia hemisphaerica|type=transcript|length=1227bpRun BLAST on NCBI protein sequence of TCONS_00048562-protein >TCONS_00048562-protein ID=TCONS_00048562-protein|Name=TCONS_00048562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp KLTQFLPAVRVMLLWMVDHSTLISKSSVNSMMDIWSEICPLFNHITNMELRun BLAST on NCBI transcript from alignment at scaffold_143:481479..488963- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048562 ID=TCONS_00048562|Name=TCONS_00048562|organism=Clytia hemisphaerica|type=transcript|length=7485bp|location=Sequence derived from alignment at scaffold_143:481479..488963- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:481479..488963- >TCONS_00048562 ID=TCONS_00048562|Name=TCONS_00048562|organism=Clytia hemisphaerica|type=CDS|length=14328bp|location=Sequence derived from alignment at scaffold_143:481479..488963- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048562 vs. Swiss-Prot (Human)
Match: EST1A (Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 4.293e-57 Identity = 151/416 (36.30%), Postives = 223/416 (53.61%), Query Frame = 1
Query: 4 LTQFLPAVRVMLLWMVDHSTLISKSSV------NSMMDIWSEICPLFNHITNMELEEANGISSSEDSDNVYLI--EDIFLAGFKPYSSKLVNGPAN----ERLKDKV----CHNLRITSLQDLITQLDESGQLPFAYDEKEGSYKAVQATQVFTSPVKQKKEFDDEGGDNMXXXXXXXXXXXXXXXXXXXXXLSGDHSQLDQLRAQKADLARQLEENEQKRQAAVAVLETHKSEGRVISENSPNHLVLDTNCFIDYLQYIQYLLSSKGFTIIVPLIVINELDGLKKGTVLDTNRSSRVRNVRDAARQAIDFLEDRFSVYDSNLRAITSSGSEMTTIAFRSEELSQDRGTNDDVILSCCLKYCKEH---FSYEGTSKIVR--REVVLLTNDRNLRVKAHSRYVPTVPMVTFMKMAQL 1188
L + LP+V+V WM+ + + + +D+WS + N +T + E + D D LI ED L+GF P L+ P + E+ DKV C R+T L+ + L GQ +E ++K + V P KE + G ++ E+ ++ + +E + E SG + +LRA+K LAR++ E +++++ AVLE H ++ E P LV DTN FID+L + LL S+ + ++VPLIVINELDGL KG D R V++ AR++I+FLE RF DS LRA+TS G+E+ +IAFRSE+++ G NDD+ILSCCL YCK+ F + +R REVVLLT+DRNLRVKA +R VP + F+ AQ+
Sbjct: 1019 LKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVP-LYKDPDDDLTLLILEEDRLLSGFVP----LLAAPQDPCYVEKTSDKVIAADCK--RVTVLKYFLEAL--CGQ-----EEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDEEEDVVIEDFEEDSEAEG--SGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQMELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQV 1418 The following BLAST results are available for this feature:
BLAST of TCONS_00048562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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