TCONS_00048580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048580
Unique NameTCONS_00048580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048580 ID=TCONS_00048580|Name=TCONS_00048580|organism=Clytia hemisphaerica|type=transcript|length=361bp
tttttcccTTAGCAACCGTTGCCATGGTAACTAGGGAAAACATGATTTTC
TAGTTTCCATAGCAACCGTTGCTAtgcagaaaaaatgttttcattcattt
cataGAGTTTCATCCAAGTAACAATCCTGCCAAGTTTCAACTTCTAATTC
TAAAGCTAACTTGAGAAAAAATGTCGCAAAGTTTCTATTTTTCCGGGTTG
CCGGGGCCGTAGCCCCTAGCAACAGggtgccattttgaaaaaaattgtcg
gaattttttatttacagtATATACTATCAATTTGtaccaaaaaaacttta
aataacTTTGCAGaacagtgtttttcaaaaaagggtcTCTAAGGGTCGAT
GACCTCCTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_143:311650..312010

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048580 ID=TCONS_00048580|Name=TCONS_00048580|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_143:311650..312010 (Clytia hemisphaerica)
TTAAGGAGGTCATCGACCCTTAGAgacccttttttgaaaaacactgttCT
GCAAAgttatttaaagtttttttggtaCAAATTGATAGTATATactgtaa
ataaaaaattccgacaatttttttcaaaatggcaccCTGTTGCTAGGGGC
TACGGCCCCGGCAACCCGGAAAAATAGAAACTTTGCGACATTTTTTCTCA
AGTTAGCTTTAGAATTAGAAGTTGAAACTTGGCAGGATTGTTACTTGGAT
GAAACTCtatgaaatgaatgaaaacattttttctgcaTAGCAACGGTTGC
TATGGAAACTAGAAAATCATGTTTTCCCTAGTTACCATGGCAACGGTTGC
TAAgggaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030891XLOC_030891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048580-exon-scaffold_143-1491911889:311650..312010TCONS_00048580-exon-scaffold_143-1491911889:311650..312010Clytia hemisphaericaexon
TCONS_00048580-exon-scaffold_143-1510915933:311650..312010TCONS_00048580-exon-scaffold_143-1510915933:311650..312010Clytia hemisphaericaexon
TCONS_00048580-exon-scaffold_143-1575043694:311650..312010TCONS_00048580-exon-scaffold_143-1575043694:311650..312010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:311650..312010 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13389	1.01378	1.17204	2.03044	14.6377	12.0449	31.1251	26.9838	17.721	16.791	10.8102	20.3004	14.065	16.6539	8.48224	7.10994	5.75915	7.5466	12.395	10.1376	5.08163	4.42752	1.78416	3.42401	18.2741	27.4721	7.68723	7.84341	0.789318	2.25604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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