TCONS_00048585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048585
Unique NameTCONS_00048585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048585 ID=TCONS_00048585|Name=TCONS_00048585|organism=Clytia hemisphaerica|type=transcript|length=379bp
ATCAGCTGATAAAAATGGCAGCCCTTATTGCAGCCCTTACGTTACATAAA
AATCACACGAGTTTTAAAAAGGAGAGACAAGTTATGATGTTATTTGGACA
GGAATTAGACCAGAAGGAACAACTCAGCAAAGTTTTTACCCTTCTGTTTT
CTCCAATTGTCAGTTGAATTGCTTGATAAAGCCTATATCAAAACAACGAG
AAGTATTACACAATTTAacgttaaaaaagaaaacaagaagTGGGTGTTCT
ATTGCACAACTTAAAAGTGTCTTACAAAATCTACTCACGAAACAAAGAAC
TGTCATGCTTACACTTTCTTATGTATACTTTTGCACCAAAATGTTTAGAG
CAGTATTGTCTGTCATTTAGCTGATTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_143:359701..360079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048585 ID=TCONS_00048585|Name=TCONS_00048585|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_143:359701..360079 (Clytia hemisphaerica)
ACAAATCAGCTAAATGACAGACAATACTGCTCTAAACATTTTGGTGCAAA
AGTATACATAAGAAAGTGTAAGCATGACAGTTCTTTGTTTCGTGAGTAGA
TTTTGTAAGACACTTTTAAGTTGTGCAATAGAACACCCActtcttgtttt
cttttttaacgtTAAATTGTGTAATACTTCTCGTTGTTTTGATATAGGCT
TTATCAAGCAATTCAACTGACAATTGGAGAAAACAGAAGGGTAAAAACTT
TGCTGAGTTGTTCCTTCTGGTCTAATTCCTGTCCAAATAACATCATAACT
TGTCTCTCCTTTTTAAAACTCGTGTGATTTTTATGTAACGTAAGGGCTGC
AATAAGGGCTGCCATTTTTATCAGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030896XLOC_030896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048585-exon-scaffold_143-1491911889:359701..360079TCONS_00048585-exon-scaffold_143-1491911889:359701..360079Clytia hemisphaericaexon
TCONS_00048585-exon-scaffold_143-1510915933:359701..360079TCONS_00048585-exon-scaffold_143-1510915933:359701..360079Clytia hemisphaericaexon
TCONS_00048585-exon-scaffold_143-1575043694:359701..360079TCONS_00048585-exon-scaffold_143-1575043694:359701..360079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:359701..360079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04346	2.03508	4.25326	3.23645	0.562867	0	0.268307	0.502372	0.175861	0	0.211434	0	0	1.15312	0.118503	0.254343	0.469994	0.160576	0.221845	0.232145	1.00888	0.885773	0.717848	1.08771	0.448128	1.99972	1.14464	0	0.463265	0.707991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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