TCONS_00048590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048590
Unique NameTCONS_00048590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048590 ID=TCONS_00048590|Name=TCONS_00048590|organism=Clytia hemisphaerica|type=transcript|length=245bp
GCTTGTTTAGAGTATAAATTAATGTATTTTATTGAGAGAATTTTTAAGAT
CGTCTATTTTTGCAAGTTTAACAAAAGATATTTAACTGatactaattttt
tttgaattttaatatcaATCTATTTGCtgctagttttatttcattgtttt
tggaCTAAAAATCTGTGCTCTAGTTAAAATGTAccatatttaaattttta
acgaatttttcaaactttctgtTACTTTAGATCTCTAATCTTATA
Run BLAST on NCBI

transcript from alignment at scaffold_143:480869..481113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048590 ID=TCONS_00048590|Name=TCONS_00048590|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_143:480869..481113 (Clytia hemisphaerica)
TATAAGATTAGAGATCTAAAGTAacagaaagtttgaaaaattcgttaaaa
atttaaatatggTACATTTTAACTAGAGCACAGATTTTTAGtccaaaaac
aatgaaataaaactagcaGCAAATAGATtgatattaaaattcaaaaaaaa
ttagtatCAGTTAAATATCTTTTGTTAAACTTGCAAAAATAGACGATCTT
AAAAATTCTCTCAATAAAATACATTAATTTATACTCTAAACAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030901XLOC_030901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048590-exon-scaffold_143-1491911889:480869..481113TCONS_00048590-exon-scaffold_143-1491911889:480869..481113Clytia hemisphaericaexon
TCONS_00048590-exon-scaffold_143-1510915933:480869..481113TCONS_00048590-exon-scaffold_143-1510915933:480869..481113Clytia hemisphaericaexon
TCONS_00048590-exon-scaffold_143-1575043694:480869..481113TCONS_00048590-exon-scaffold_143-1575043694:480869..481113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:480869..481113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830086	1.61893	0	0	2.23883	3.53831	0	3.99642	2.09849	2.59932	1.68198	6.08116	2.20826	1.71997	1.8854	2.52916	3.73885	3.1935	0	0.923368	0.802574	1.1744	6.66232	0.865288	0	1.5908	1.13821	3.64419	1.84266	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top