TCONS_00048629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048629
Unique NameTCONS_00048629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048629 ID=TCONS_00048629|Name=TCONS_00048629|organism=Clytia hemisphaerica|type=transcript|length=2772bp
TTTTAAcattataaacaaaaaactgCCAGCAGAAAGGAGCAATGTTaact
catcaaaattttttgggaaactttatgtgaagaaaaaacattttatcaCG
AGACTTTCTATGTTACTTAATCATTAATACATTACAAAGAAGAGAGAAAG
ACCCAAGCAGAAATCTAAATTATATTACAAGATGCCAAAACAAGTTCTAG
AAACTGATATTGaaAAAGCCACTAGTGAATACAATGTCTCAGAAGACTGG
CAAGTATTCATGGACATTTGCGATCGCATAAAGACAATGCCAAATGGACC
TAAGGATTCGTTAAAATGTATTATGAAAAGGGTCAACCATCAAATCCCTC
ATGTTGCTCTCCAAGCATTAACATTGTTACAAACCTGTGTCTCAAACTGT
GGTAAACAATTCATGCTGGAAGTCAGCTCCAGAGATTGGTGCAATAATGC
TAAAAATGTCATCACGAGAGGTCATGAAAAAGTTTCACAACGTCTTCGAG
AAATGATCAAAAAGTGGGCTGAGGATGAATTCAAAGAGGATCCACAATTA
GCATTAATTGGTCAGTTTTACAAACGTCTAAAACAAGATGGTTATGGCTT
TGAATTTGGTGCGACAgaCAAACCAAACTCTACACTTGCAGCATCTTTGG
TTCAAACACCAAAACCACGTTCAGAAGATGACGTTAGTTTCAAAGAGGAC
CTTGAGCTTGCCATCGCAATGTCTTTACAAACCGCTGACACAAACCAGGG
GCAGAAGACATCTTCAGGTGGATCAAGCTCAGCAGGAGGTGCAAGCAGTC
TTTATCCAACCTTCTCTGCTCCTCAACTTTCCTATGAAGAAACAGAGTTG
TTTCAAGTGCGGGCACTGTACGACTTCGAGGCTGCTGAAGATAACGAAAT
GACTTTCAAAACTGGTGAAATCTTCGCCGTTCTTGATAACAGTGATGAGA
ATTGGTGGAAAGGCAAAAATCATCTTGGTGTTGGCTTATTCCCTGCTAAC
TTTGTCACCTCTGATCTCACTCCACCAGAAAGCAAATCTGAAAAGAAAGT
TCGATTCTCGGACGTGTCTAATGACCAACCACAATCAAATCAAGTCGTTT
CATCACCACAAGTCCAAACGCAAAATCTCATAGtgaAAAGGAAAACGGTC
ATAGACGAGAATCACTTAGACTCGACCTTATCGATGCTGAAGAACGCTTC
ACCCAATGAAGTTggtgatgaagaagaaaacataGCAAGCATGGAGGACA
CGTGCAAAGAAATGGGACCACTCATCGAAAAGAAAATACTCGAAACTGAC
AGGCGAAAAGATGATCTAGGTGACTTGAACGACAAATTCTTACAAGCTTT
ACAAATGTATCAGCAGCTTATGAAAGAACCCATGGTGGCGCCACAACCGC
CCCCGCCACAACCGATGGCGCACATGCAACAGATGCACGGTGGCCACATG
TACCATAGTATGGGATACCAGCAACCTCACTCGTTACCGGCAGCCGGTGT
GGATCCGAATTACCAATATCAACATTACGGTGCAGCGACACAAGGATACG
CGAGTCTACCACCACCGCAATATCAAGTAACTGATCCAAGACAATATCAA
ACGTCGCAACAACAACCGCATTCTTTGGATTCATACGATGCTAATAAAAT
TGCCAAACAACAACAATCGCCCGCCCAACAATCACACCCATCTTACGCCC
TTCCGCAAACGCAAGGAGCACAACCACCCACATCGCAATACGCCCAAACC
TACCAACAACCTATGGCACAACAATCTATGGGCAACACCCCGCAAGGTTA
TACAACACAGCAACCGAACTACCAGCAATCTCCACAACCGCAACAACATG
AGAACTACTACACACAACAGCATCAACCAGCCTACAGTGCTGGCTACACG
ACAGGTTACGAACAACAACAGCAGCAACCGGTATATCATCAACAGCCTGT
TTTCCAATAGTCTTAATTCAAATGTAGACTAATCGTCTTGTTGTAAAGTC
TGCCAAGATCGCGTTAAGTTTCCTGTCCCACGGCAAACCACGATCATTGA
TACACGAAAGTTGATCACTCCTACAACCATAACATTCTGAGGTGACAAAA
GTGTCTTGCCAGTAATGTAGGGTCAAATGCAAGGCACGAGAAATGAAAAG
GGAAGTTAGTCTATATACGTAAAGCATCTCAATTCTTTGGTACTTTTATG
GACATTTAGCTGATTCGTCAGCTCTAATCTTTGGGATATCGTCGTTTTGG
AATATtaactttaaaaagaaaatgttaGAGGAACattctattttgaaatt
tcgaatgaacatttttatcataaaatgaaagaaacattGTTACAACCTTA
TAGTTTTGCATGATACTTATTACTAAGATTTTGGATCGGAaaacactctt
tttttttataagaacaatgaggctcaaaagtgtaaaaaaataaaaacaat
ttactTAAAATTAGTAGAAATAGGGTATTAACTTTTGGCCTAAAAATAAG
AAGAGGATGGTAAAAACTTTTGGCTCAGAGTGCCAAATAAATTAAATAGC
CAAGcctcatacacgttttttttataagaacatccaaaatttttgaagcc
ttcggatgtttttaactatttgagttttaagcctaaataaTATGTTCTTA
TCGTGTTCTTATGTTCACCATTTTTGAGAattgttgtctattttcctaag
aaagcggctgttttagagtctgcaaagccctAAATTGttattaaattgtt
cttaacattttggccatcgaag
Run BLAST on NCBI

transcript from alignment at scaffold_145:169319..182591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048629 ID=TCONS_00048629|Name=TCONS_00048629|organism=Clytia hemisphaerica|type=transcript|length=13273bp|location=Sequence derived from alignment at scaffold_145:169319..182591+ (Clytia hemisphaerica)
TTTTAAcattataaacaaaaaactgCCAGCAGAAAGGAGCAATGTTaact
catcaaaattttttgggaaactttatgtgaagaaaaaacattttatcaCG
AGACTTTCTATGTTACTTAATCATTAATACATTACAAAGAAGAGAGAAAG
ACCCAAGCAGAAATCTAAATTATATTACAAGATGCCAAAACAAGTTCTAG
AAACTGATATTGGTAAGAAAATTTGTTTCTGTCATATTTTTTATCATGGA
ATTTACTTGTTTATTTTGGTCACAAAACCTACAGTTAAATAAATGTTTTG
ATGAATGCagcagtcttttgaataactccacatacattactttccctcag
ccaataaaaacataatgataaattatcttgtctctagtaGGTagctaccg
tgagtggtcctaaatccgacagccctgcctaaatccgatgcggtctttca
aagatacaaactaaaataaaaacaagcctttcgctgtgacgcaatgaaga
taccaaagtgtcaatcTTGTtctagatgttttgtttcgagagctcttgca
atagtttatcgttcaacttggagagggaatgtttgtaaacatagattttt
tttcataaccagttatttggggggtcggaatgaattaggcagggctgtcg
gatttaggaccactcacggtactgtggagtaattagttattcaaacaACT
GTTACGTTCGTCAAAACAACTATTGAGAGAGGCTACAAACTTCATATCAT
CTTAGGccgcaatcacaaatatctttgtttcgcgtcgcccgaccgactcc
tgaaaattgagtaaaattcAGTGGGAGAGTCGGTAAATTCTTcggacttt
ttgttttgatgatgtttcctttgctcaaaaattttattattgcggATTTT
TGTGAACGATTTCTGGTGCACTCGCAGCATTTTAACTCTGTTTATCATTA
CACGTGCCATTATGTGTCAAAGGTCACAGTGTTTAAACTTTATAATCTGA
AACCACGCAAAACATACACGCGATTGGGCCTCCTGTCGCCTCAGTTAACA
CCCTTTTACCTTTTACCGCCTCACagaccaattttaagaaaacccgaaaa
tttttactacTGACCgacgaccgactcactttttagatccAACGAGGACA
CGAAATGAAGACATTTGTGATTACCGCCTTAGATAAATAATAAATAGGat
ggcaatttggccaccatttcaccaaacctccaatgtcagtgaggctggaa
cttcgatttttgaggatcacgattttaccagttttttagcaatttttgcc
tcgctaacccaaatcttgcAACCTCTTTACGTTAAGGAAGAGctaaatta
gagtttttcagcgttctgAAAAAAACGCacagcagaaattttttcatctt
cacaggatcaattctccacaacaaaatacatcttttggtctttgggtttg
tttctgacgttttttcttcaaagaatatcgatcactttccttttcccctt
aaGCCTGCAAGAACAAAATTATTAGCTTGCGttttcgcgcgggcgaataa
agatgaggcggcaatcttgcactgtgGGTGATGCTGCTTAGTTTTCGCca
tattttgcgcccacgatagaatgtccaaacacgggggtcttccaaatgat
aaactatgtcgttctgtaagtgtttattttctgagatacaaatagtatat
atattgaatattattaacttatttatctGGATTTAAATCTTTAATTCGTT
GTACCTCAGTGGTCACGGGAGATGTAAAAAAGACAGGGATATAAAGAAAG
AGATACTAGTCTACTTTATGATGTAAAAAACCGAACAGAAAAACACCGAG
CAGTAGCTCTTCGGGAATCGAAAAACAGTAATCTGGAGAGTAATCAACTG
TATGAGACATTATGAAATGCCCATTAGTATTCTTATGAACTGTATGATGC
TACAGAAACATGAACTGTCTTGGACCGTTGTCCATTAGCCATGGTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTGTTCCCTTCATATTTTATAGTTTTATCCTTGTAT
ATTTTAGATCCAAACAttctaaaaattacaataaaatcactaaaaagtAA
TCAACGAATGACTTTTGTCCATAATCCTCATTTTTTAAAAGTATGTGTGC
TGGTAAGGACACAAAGAAGAACAATACAAAcacaaaaaaagacaaaagca
CAAAAGACTTTATTATTAGATGATGAAAGCAACTATGAACTTCTAGTTTT
TTGTATTGTACAGGTGAATAGTTTCTCTtcatatctaaaaaaaattctag
ataagtattttgttttcttcatttatatAATCAGTGTGGCTCGATCcttc
agatccttggttagaaaaagctatacctgtttacttttttcttgccagat
tcaacaagccatcaaccaacaaaattaatactgacatcaaaaaattcaca
cgacctttccactagacacttctaaattatctgccattatgaagatgttc
cgaaattaaccaatcgggtttacaatcggaattcctctgggagttagaga
gtcgggaaatgtaaagttacgtaataggtaatacataatttttccgGGGC
TTAAacgtataaaaaaattgaaatggtttgtttttttcttcattatatat
ttaagtttccattatcaaaattctagaaatgttaatttgtagaccatatt
agaaaatggttatatatttcgcaaaataaacacttacaaaagctattact
tactatttttacccccgctttTTAAACAGCGTCTTCTGTGGGCGTGATAT
CAGGCGGAGATAAAACGCTCTCATCATAAGATTTTTGGGTTgtcttattg
tttgttccttttgtcAAGTCTGTCGGTCCTATTGTTCATGCTAAATCCAT
ACACCATGACGTCAATATTTGGCGGCATACCtgaagataaaaacaaaaag
attatcattatttttgcatgaattacACTACCTTATACGccattataaaa
ttatacaaaacgaaaACGAGTCTAGGCCGCCCGCCTAGAGAGCGCGGGCC
CTAATATTTTTCTCTCGCGGTCTTCAGGGGAAtacgaaagtgatcgatat
tcttcaaaggaagaacttgccaaaaaaaaacctagacaaaaagatgtatt
ttgaggttgggaatggatcctgcaaagataaaaaaattttgactaggtgt
ttttttggcaaacccaaaaactctaattaatcaagctaaaaaggttacgg
gttttgagcaatcgaggcaaaaatcagcaaaaagctggtgttttccgtAA
ATCTGAGAATCGCGATAAGATCCTCACTGATAATTGATTCTTAAGTTcaa
atgttatctttttttcacATTCTTGGTTTTTGTCGTGTTTGAATTCTCTG
ACTTCCATCCCTaacttttctgaattttttgagTCAGAAAGCTGAAAGTT
ATTGGTGATCACGGCCTTATTTTTGGGGTACAAGGGCACTAAATTGGTGC
ATTTggtggaactaatttttgcgctTGACACCCACGTTTTGTTCAAATTC
TTTCATATTCCCAGAggtttgagaatattttttagtAGAAATTATATTTT
GCACGAATTCCCTCAAAAATTAGTTAACAGTGAAAATTTATTTGTGATGG
TCTCTTTGCAAAAATGTTGGTTTTTGGACTTAGCATCAGAATGACATTAG
TTGTGAGGAAAATCAATACGCCAATAAAGGCTAATTTCAAGGGGCTACAC
AAAAAAAGAAGCTTTGAATGTTTGAAAGGTTAAGGTTTATTGTATTTTAA
agcttgtttttttatttattagaaAAAGCCACTAGTGAATACAATGTCTC
AGAAGACTGGCAAGTATTCATGGACATTTGCGATCGCATAAAGACAATGC
CAAATGGGTAAGTTCAGTTAATTACAACTTTTAGAATATTTGTTTCATGG
TCTCTATGTTGTTCCATTGTAGGGGCCCTCAGCAGGAATGCAGGAATGTg
taaatgggctttttcacttgcatgaacagaaattgcgtgaatttcgaaaa
agcGTGAACATGCGtgaatttggaaaaatattgGGTATGTATTGTGTGAA
TTGAAGGTCTGCTGAGGGGCCTCATTGTAAGGTAAATAATTGGGTTTTGC
TCAACTCCAGAGTAGTTTTTCAATGCTTGATGTACTCAGCAACTAAAGGG
AAATCCATGGATAGAAAGGAGTGACCTTTGGGTAGATCAATATAAAGAAA
ATAGCCAGATATAAATAAGCTTTTTAGGATATTTGACTTTTTTACTTTCA
ACAATTGTTTGGTGTTTTATTTTCAGACCTAAGGATTCGTTAAAATGTAT
TATGAAAAGGGTCAACCATCAAATCCCTCATGTTGCTCTCCAAGCATTAA
CAGTAAGTGCAAGAATTCATATTCATTTAAAACTAGTTAATTAGCTGAAG
GCTGAGTGAATATCCAAACCCTTGAGTATTCTTAAAAGACCCTATTTTCT
CACTAAAATTTTTTCCTTGATTCTTAAGAATAATGTTCTGAGTCTTGATA
TAATCTTGATGTAATCTTAATATTCCAATATAATACCAACAAGTACCAAA
TTAACTTGAATGATCTTTGTTTTTCTAGTTGTTACAAACCTGTGTCTCAA
ACTGTGGTAAACAATTCATGCTGGAAGTCAGCTCCAGAGATTGGTGCAAT
AATGCTAAAAATGTCATCACGAGAGTAAGGAACCTTTTcatcactttttt
ttcaaagaaacctCATGTTTCATTCATACTGTTGTCTTCTAGAGCCATTG
TTAAATTCTATCCTTACCTTTCCTGAATAGGGTCATGAAAAAGTTTCACA
ACGTCTTCGAGAAATGATCAAAAAGTGGGCTGAGGATGAATTCAAAGAGG
ATCCACAATTAGCGTAAGAACTGCTTCCTCCCTGTATTCGTTATGGGGGt
attgattaaaaaagattGACCTAGTACATGGGCTGGGATTGACATAATAT
TTCTTATCAAGATATAGGTCTCCTATTTTCCCCGTCTGTGAATATCCTGC
aatgaaagattgaaaaaatcTTGCCTCCTCTCCTATGTGACTGTTTTCCT
AAGTTTTACTAGCCTGTTTTCCTAAGTTTCACTAGCCTGTTTACATGAGT
TTCACTAGCCTGTTTTCATGAGTTGGTGAAAGAGTTTGTACGAATCTNCT
GTTTTCATAAGTTTCACTAGCCTGTTTTCATAAGTTTCACTAGCCTGTTA
CGAATCGATTTGATCCCATCTTGTTTATTTATTAGATTAATTGGTCAGTT
TTACAAACGTCTAAAACAAGATGGTTATGGCTTTGAATTTGGTGCGACAG
TAAGTATTTCTTCCTAACTGTTTATAATGTTGATTTTAAAGACCtgcttt
aaatgtttttttaataagcaaccgAGTTACTAGGGGTTCAGCCCTgagaa
tggccaaaaaattaagcaaCTTGGCCTTAGCAACCTTGCCTTGAAACTGA
GCACGAACCAGGAAAGCAAccaaaaatacctaaaaaagaTGCATTTTCAG
CATTattatttgacattaaaatgTGTACTGATGGTATTTTAGAATTGACT
GTTACTTTTGACTACCTAAAGGGACCGTGGCACAAAGGTAGAGCATTTTG
CTTCAATTTGCAAGGTTCAAGGTTCAGTCCCAGCTAGGTCATACAACTAG
GCTTTCATGGTACTTNGTGGCACAAAGGTAGAGCATTTTGCTTCAATTTG
CAAGGTTCAAGGTTCAGTCCCAGCTAGATCATACAATTAGGCTTTCATGG
TACTGTCTACTTTATGCTCAGCAATTTAAGAGACGGGTTAAGCATAACTT
ATAAAATATGGGCTTACCTTTGGGTAGCTAGCTATATAAAATGACATTCT
GGGTTGCCCTTAACTGCAGTTGGTTACAAAACCGACTTTCTTGACTATCA
GAAGTGAAATTGTAAGCCATAACCTTTTACCTCTTTCAATtacctttttt
ctttctttaggaCAAACCAAACTCTACACTTGCAGCATCTTTGGTTCAAA
CACCAAAACCACGTTCAGAAGATGACGTTAGTTTCAAAGAGGACCTTGAG
CTTGCCATCGGTAATGAGAAAAGTTCTAACTTTAAAAAGACTGTTTTGTA
TTGAAATGTGTAGGTCCAATTGATCAATCTATaatctaaaagttaaaaaa
tacaaagatttgtagctttacttttttaaatatgaAGATGAAGCTAATTT
TTTTCCCTTTCTTAGCAATGTCTTTACAAACCGCTGACACAAACCAGGGG
CAGAAGACATCTTCAGGTGGATCAAGCTCAGCAGGAGGTGCAAGCAGTCT
TTATCCAACCTTCTCTGCTCCTCAACTTTCCTATGAAGAAGTAAGTTTCG
TTCTTTAACCTCTGCAATTAtaatacacctatcaaccttTAAAACGTGAG
GAGGCTGGGTTCGAGCTTACCATAaaggaatgacgtcaaaatacctgaag
tcgttgcattgacatTCTCTAAGACAaagaattttaatttcatttccttg
taaattcattactaaacccttaaaactgcttaaaagtTGACTACAGTGCT
AAGGGTTGAAAGATGTATTGGCTTGGTTGCCTTTACTGGCACAAAATATA
GACTTCACAGTAGTAAAACATTGAGTGAACTTGAAAGGTATATATGCTGA
ATAAGGTTAATATATTCTGTCGTTTCCACTTGTTTAATTGAGAACGGATG
ATAATTTTACAGTTACTTTATATCATATTTGGTTATATTTTTAGACAGAG
TTGTTTCAAGTGCGGGCACTGTACGACTTCGAGGCTGCTGAAGATAACGA
AATGACTTTCAAAACTGGTGAAATCTTCGCCGTTCTTGATAACAGGTAAC
aagaaaatacaatgaaaaactGTTCATGTAGAAGGTAGAACGTTGTCAAT
TTTACTACTTGGTgtattttaaagtatttttatctctgaagaagctaatc
aaatttcagaaaacactAAAACTTTTCCCACATCATATGACAACAATCAA
ATGATCAGTGAAATTTAACAACCCAAAATcctaaaagacaaaaaagacaa
aacaaaacaaatttcactAGAGACACATTACTagaacaatcaaaaacaaa
ttataGCGAATAGGAGcccaatatttaaaatgaaaagagaTCTAAACCGA
AAGAAAATCGAAAAGTATGGAAAGATGAAGACCGAAGATCAGGTGCGGTA
CCTAGAGTAAGTATCCCCTGCCTAATGTCATGATTTGGCACTTTTCCAGG
ATTCGCTGGgattttgattaaaattcaatttatttCTCTTCTCTATTATA
GTGATGAGAATTGGTGGAAAGGCAAAAATCATCTTGGTGTTGGCTTATTC
CCTGCTAACTTTGTCACCTCTGATCTCACTCCACCAGGTagttaaaagat
atttttttatatctaATATTCATTTTATATAAGTACCAATGATCGTAGAG
TAAAGAGGACAGTTCAAATTTACATAAAATTTAGACCATGATCTAATTTA
ATTGTTATTATCATCTTCTAAGATCAACTAAACTACAAATGATTTGCGTA
ACGCTAACGTTGACTTCTCTTCTTTACTTTATAGAAAGCAAATCTGAAAA
GAAAGTTCGATTCTCGGACGTGTCTAATGACCAACCACAATCAAATCAAG
TCGTTTCATCACCACAAGTCCAAACGCAAAATCTCATAGGTAGTTGCTTG
TATTTTCATATCTACTACATTTTTTAAGAGAAAGCTCTTCTAAACATCTA
AACATTTCACAAACTACTGTCTTAAAGTGGTTGCCCATAAGCGAGTACGT
CCGATTGATTAATAACTTCAAAATTAataatcatcatttttttttttttt
ttttttttttttcaaaaaaaaaaaaaattttttttttttttttttttcta
ttttcagtgaAAAGGAAAACGGTCATAGACGAGGTATgtatcatgacata
tattggaGTCTAGTTTGAACACTATCTAACAAAGCAAGCAATGATTTGAG
TTGTCCCAACGGTCTTTTAGCTCTAGTTTGGACGGCCGACTTTTTGTCCT
ATCTACTCTTATTTTTATAGTAGGCAAAGAGTGGGCAGAAAGTCGATAGT
TTAAAGTCGATGTCAAAAGAGGGCAGTCCATTGAttttagacagccaact
ttcTTTAATTAAGCCCACTTTAATTTTACAATTAGAACAGGCACTGCAAA
AAGTCTTCCGTCTAAACCAGAGtttaatttgatttaatttAATAATTGAC
ATACATAAACCTATAGGAGAGAGTAAGCTTTTTCCTAGCATGGGATTCAT
AGGCCTAGCGATAACTCTATCAAATTCCTTGTAGAATTATTTAAACGCTT
CACATACTGATACAGGCATTATAGACTATTTGAGACGAAGCCTATTCCTG
GCCTAGGATTCATAAGCCTAGCGATAACTCCCTATCCATTTTCTTGCAGA
ATCACTTAGACTCAACCTTATCGTTTCTGAAGAACGCTTCACATACAGAA
GCATAGTAGGCTATTGGAGACTAACATTATCTCTAGTCTAGGATCTATAA
GCCTAGTGATAACTCTCTATCCATTTTCTTGCAGAATCACTTAGACTCGA
CCTTATCGATGTTGAAGAACGCTTCACATACAGAAGCATAGTAGGCTATT
GGAGACTAACATTATCTCTAGTCTAGGATCTATAAGCCTAGTGATAACTC
TCTATCCATTTTCTTGCAGAATCACTTAGACTCGACCTTATCGATGTTGA
AGAACGCTTCACATACAGAAGCATAGTAGGCTATTGGAGACTAACATTAT
CTCTAGTCTAGGATCTATAAGCCTAGTGATAACTCTCTATCCATTTTCTT
GCAGAATCACTTAGACTCGACCTTATCGATGTTGAAGAACGCTTCACATA
CAGAAGCATAGTAGGCTATTGGAGACTAACATTATCTCTAGTCTAGGATC
TATAAGCCTAGTGATAACTCTCTATCCATTTTCTTGCAGAATCACTTAGA
CTCGACCTTATCGATGTTGAAGAACGCTTCACATACAGAAGCATAGTAGG
CTATTGGAGACTAACATTATCTCTAGTCTAGGATCTATAAGCCTAGTGAT
AACTCTCTATCCATTTTCTTGCAGAATCACTTAGACTCGACCTTATCGAT
GTTGAAGAACGCTTCACATACAGAAGCATAGTAGTCTATTTGAGACGAAG
CTTATTCCTAGCCTAGGATCTATAGGCCTAGTGATAACTCTCTATCCATT
TTCTTGCAGAATCACTTAGACTCGACCTTATCGATGCTGAAGAACGCTTC
ACCCAATGAAGTTggtgatgaagaagaaaacataGCAAGCATGGAGGACA
CGTGCAAAGAAATGGGACCACTCATCGAAAAGAAAATACTCGAAACTGAC
AGGCGAAAAGATGATCTAGGTATGATAGTcaaaatgtatgagcgattttc
AAGTTTGCTAGTGACCAAGTTTGCGAGTGACCAAGTTTTACAAAGATAGG
GAAACTGACTGGATAGTCCATTCTTTTGACTCGCTTTTTTTATTAGCCAA
GATGGAGAGATATGCGTTAATAGAGCAATAGACTTTAGTCAAGACAGAAG
AGAACGAATTCAGAAGCGTTAAGATGaatgaaattagatttttagTGTTC
ACATTTATCATTAGAGGAGAATTGTGCCTATGTCAAAGATTATTTTCCTG
ATCTTTGGATATAGTGTGATAAAGGACCCCCTTCAAGGTGCACACTATTA
TGATGCAACAGTGCAATTCAACACATTccaaaatttgataaagtttttct
TCCAAAAACGTCCCTTCAAATGATAAAAAACATGACTTGTTCAGGTAGGA
CAAAATCAGAAAAGTTGTAAAAGTAGATACATTTTAGGTGCTAAATTaac
cagatgagatggagtttttataggatactttaataattggtcatttgaag
taatgaaagtgacgcgttctttagaaaatgtaacaaaattgtttaatTAC
TGGTTAATGACCGATCAAATCAAAttagagcttgtaaaaacttcatctcG
TCCCAAATTAATCTTGCTTCTTTGATTTTCCTCTCCCAACAGGTGACTTG
AACGACAAATTCTTACAAGCTTTACAAATGTATCAGCAGCTTATGAAAGA
ACCCATGGTGGCGCCACAACCGCCCCCGCCACAACCGATGGCGCACATGC
AACAGATGCACGGTGGCCACATGTACCATAGTATGGGATACCAGCAACCT
CACTCGTTACCGGCAGCCGGTGTGGATCCGAATTACCAATATGTAAGAGG
ATtgactttttactttttcacaATTCAGCTTTCATTAAATTCTCTCTACA
GCAACAAAAACACTTCTGCCATTTTTTTCAGTAAATGTAATAATTTTGAG
GGAATCACCCTTGGTTGAatcaataatgttttgataAGTGATCCATTTAG
TTGTACTTacgaaacatttttatttgtggTCAAAGTTAGTGTATGCATAA
CTTAACTGCAATAATAGGCTACGTTATATCTTCCtccgtttcgagcgtaa
aactcctactaaGACCTAAAAACCTGGAGCTGTGTATTGTGTAGACTACT
GCAATAAAGGAATCAATGAAACATATTTAACTTTATTCTCTTTTCTAGCA
ACATTACGGTGCAGCGACACAAGGATACGCGAGTCTACCACCACCGCAAT
ATCAAGTAACTGATCCAAGACAATATCAAACGTCGCAACAACAACCGCAT
TCTTTGGTACGTTTTCAACTTCAATGTCCCCCAATgtttttcgctaattt
tttGCGTTTCTGAAAGGGTTTAGGTAGAATTTACACTCAGTGGGGAGGTC
GGCTCTTCTTCTTGGAAGTAAAACCAATCACTTGGTTATGTAGTGAAGTG
CAATGTCTTGGCGAAGAATTAGTTTCTTTTTTATGGTTATAAATCGATAA
GATGTCAGACACGTAATTCTCGTGAAGGAACaaagaaaagtattgaattC
CATAAAAACGGTTTTTTCTCTCCACCAGGATTCATACGATGCTAATAAAA
TTGCCAAACAACAACAATCGCCCGCCCAACAATCACACCCATCTTACGCC
CTTCCGCAAACGCAAGGAGCACAACCACCCACATCGCAATACGCCCAAAC
CTACCAACAACCTATGGCACAACAATCTATGGGCAACACCCCGCAAGGTT
ATACAACACAGCAACCGAACTACCAGCAATCTCCACAACCGCAACAACAT
GAGAACTACTACACACAACAGCATCAACCAGCCTACAGTGCTGGCTACAC
GACAGGTTACGAACAACAACAGCAGCAACCGGTATATCATCAACAGCCTG
TTTTCCAATAGTCTTAATTCAAATGTAGACTAATCGTCTTGTTGTAAAGT
CTGCCAAGATCGCGTTAAGTTTCCTGTCCCACGGCAAACCACGATCATTG
ATACACGAAAGTTGATCACTCCTACAACCATAACATTCTGAGGTGACAAA
AGTGTCTTGCCAGTAATGTAGGGTCAAATGCAAGGCACGAGAAATGAAAA
GGGAAGTTAGTCTATATACGTAAAGCATCTCAATTCTTTGGTACTTTTAT
GGACATTTAGCTGATTCGTCAGCTCTAATCTTTGGGATATCGTCGTTTTG
GAATATtaactttaaaaagaaaatgttaGAGGAACattctattttgaaat
ttcgaatgaacatttttatcataaaatgaaagaaacattGTTACAACCTT
ATAGTTTTGCATGATACTTATTACTAAGATTTTGGATCGGAaaacactct
ttttttttataagaacaatgaggctcaaaagtgtaaaaaaataaaaacaa
tttactTAAAATTAGTAGAAATAGGGTATTAACTTTTGGCCTAAAAATAA
GAAGAGGATGGTAAAAACTTTTGGCTCAGAGTGCCAAATAAATTAAATAG
CCAAGcctcatacacgttttttttataagaacatccaaaatttttgaagc
cttcggatgtttttaactatttgagttttaagcctaaataaTATGTTCTT
ATCGTGTTCTTATGTTCACCATTTTTGAGAattgttgtctattttcctaa
gaaagcggctgttttagagtctgcaaagccctAAATTGttattaaattgt
tcttaacattttggccatcgaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030915XLOC_030915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048629-exon-scaffold_145-1491911889:169319..169530TCONS_00048629-exon-scaffold_145-1491911889:169319..169530Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:169319..169530TCONS_00048629-exon-scaffold_145-1510915933:169319..169530Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:169319..169530TCONS_00048629-exon-scaffold_145-1575043694:169319..169530Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:174191..174275TCONS_00048629-exon-scaffold_145-1491911889:174191..174275Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:174191..174275TCONS_00048629-exon-scaffold_145-1510915933:174191..174275Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:174191..174275TCONS_00048629-exon-scaffold_145-1575043694:174191..174275Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:174695..174770TCONS_00048629-exon-scaffold_145-1491911889:174695..174770Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:174695..174770TCONS_00048629-exon-scaffold_145-1510915933:174695..174770Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:174695..174770TCONS_00048629-exon-scaffold_145-1575043694:174695..174770Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:174997..175092TCONS_00048629-exon-scaffold_145-1491911889:174997..175092Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:174997..175092TCONS_00048629-exon-scaffold_145-1510915933:174997..175092Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:174997..175092TCONS_00048629-exon-scaffold_145-1575043694:174997..175092Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:175199..175281TCONS_00048629-exon-scaffold_145-1491911889:175199..175281Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:175199..175281TCONS_00048629-exon-scaffold_145-1510915933:175199..175281Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:175199..175281TCONS_00048629-exon-scaffold_145-1575043694:175199..175281Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:175654..175717TCONS_00048629-exon-scaffold_145-1491911889:175654..175717Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:175654..175717TCONS_00048629-exon-scaffold_145-1510915933:175654..175717Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:175654..175717TCONS_00048629-exon-scaffold_145-1575043694:175654..175717Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:176379..176478TCONS_00048629-exon-scaffold_145-1491911889:176379..176478Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:176379..176478TCONS_00048629-exon-scaffold_145-1510915933:176379..176478Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:176379..176478TCONS_00048629-exon-scaffold_145-1575043694:176379..176478Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:176634..176758TCONS_00048629-exon-scaffold_145-1491911889:176634..176758Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:176634..176758TCONS_00048629-exon-scaffold_145-1510915933:176634..176758Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:176634..176758TCONS_00048629-exon-scaffold_145-1575043694:176634..176758Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:177163..177263TCONS_00048629-exon-scaffold_145-1491911889:177163..177263Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:177163..177263TCONS_00048629-exon-scaffold_145-1510915933:177163..177263Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:177163..177263TCONS_00048629-exon-scaffold_145-1575043694:177163..177263Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:177720..177805TCONS_00048629-exon-scaffold_145-1491911889:177720..177805Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:177720..177805TCONS_00048629-exon-scaffold_145-1510915933:177720..177805Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:177720..177805TCONS_00048629-exon-scaffold_145-1575043694:177720..177805Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:178003..178107TCONS_00048629-exon-scaffold_145-1491911889:178003..178107Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:178003..178107TCONS_00048629-exon-scaffold_145-1510915933:178003..178107Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:178003..178107TCONS_00048629-exon-scaffold_145-1575043694:178003..178107Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:178326..178351TCONS_00048629-exon-scaffold_145-1491911889:178326..178351Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:178326..178351TCONS_00048629-exon-scaffold_145-1510915933:178326..178351Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:178326..178351TCONS_00048629-exon-scaffold_145-1575043694:178326..178351Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:179003..179019TCONS_00048629-exon-scaffold_145-1491911889:179003..179019Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:179003..179019TCONS_00048629-exon-scaffold_145-1510915933:179003..179019Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:179003..179019TCONS_00048629-exon-scaffold_145-1575043694:179003..179019Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:179695..179837TCONS_00048629-exon-scaffold_145-1491911889:179695..179837Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:179695..179837TCONS_00048629-exon-scaffold_145-1510915933:179695..179837Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:179695..179837TCONS_00048629-exon-scaffold_145-1575043694:179695..179837Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:180511..180710TCONS_00048629-exon-scaffold_145-1491911889:180511..180710Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:180511..180710TCONS_00048629-exon-scaffold_145-1510915933:180511..180710Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:180511..180710TCONS_00048629-exon-scaffold_145-1575043694:180511..180710Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:181067..181174TCONS_00048629-exon-scaffold_145-1491911889:181067..181174Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:181067..181174TCONS_00048629-exon-scaffold_145-1510915933:181067..181174Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:181067..181174TCONS_00048629-exon-scaffold_145-1575043694:181067..181174Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1491911889:181447..182591TCONS_00048629-exon-scaffold_145-1491911889:181447..182591Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1510915933:181447..182591TCONS_00048629-exon-scaffold_145-1510915933:181447..182591Clytia hemisphaericaexon
TCONS_00048629-exon-scaffold_145-1575043694:181447..182591TCONS_00048629-exon-scaffold_145-1575043694:181447..182591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:169319..182591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6532	15.7762	7.37551	5.65413	32.2149	25.9204	27.3009	29.2384	17.144	20.531	19.293	13.82	16.7269	13.6461	11.4689	13.9836	17.0849	18.401	16.7088	24.9999	15.7033	16.2103	16.2778	17.9269	22.0357	22.6622	36.516	31.8892	27.8874	26.0451
Blast
[Close]
BLAST of TCONS_00048629 vs. Swiss-Prot (Human)
Match: STAM1 (Signal transducing adapter molecule 1 OS=Homo sapiens GN=STAM PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 2.034e-94
Identity = 170/394 (43.15%), Postives = 240/394 (60.91%), Query Frame = 2 
Query:  206 DIEKATSEYNVSEDWQVFMDICDRIKTMPNGPKDSLKCIMKRVNHQIPHVALQALTLLQTCVSNCGKQFMLEVSSRDWCNNAKNVITRGHEKVSQRLREMIKKWAEDEFKEDPQLALIGQFYKRLKQDGYGFEFGATDKPNSTLAASLVQTPKPRSEDDVSFKEDLELAIAMSLQTADTNQGQKTXXXXXXXXXXXXXLYPTFSAPQLSYEETELFQVRALYDFEAAEDNEMTFKTGEIFAVLDNSDENWWKGKNHLGVGLFPANFVTSDLT--PPESKSEKK-VRFSDXXXXXXXXXXXXXXXXXXXXXLIVKRKTVIDENHLDSTLSMLKNASPNEVGDEEENIASMEDTCKEMGPLIEKKILETDRRKDDLGDLNDKFLQALQMYQQLMKE 1378
            D+EKATSE N +EDW + +DICD++     GPKD L+ IM+RVNH+ PHVA+QALTLL  CVSNCGK F LEV SRD+ +   NV+ +GH KV ++L+ ++ +W  DEFK DPQL+LI    K LK+ G  F    +       A+  +    P +  +   +EDL  AI +SL+     Q Q++           S+LYP+ S+  L+  + E  +VRA+YDFEAAEDNE+TFK GEI  VLD+SD NWWKG+ H G+GLFP+NFVT+DLT  P   K+EKK V+FSD    +    +                   IDE+ +D  L ML++  P++   +   +  +E  C +MGPLI++K+ + DR+  +L +LN K ++AL +Y +LM E
Sbjct:   12 DVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT-DEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAIELSLK----EQRQQS--------TTLSTLYPSTSS-LLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPE--------------PEPAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE 377
The following BLAST results are available for this feature:
BLAST of TCONS_00048629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STAM12.034e-9443.15Signal transducing adapter molecule 1 OS=Homo sapi... [more]
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