TCONS_00048690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048690
Unique NameTCONS_00048690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048690 ID=TCONS_00048690|Name=TCONS_00048690|organism=Clytia hemisphaerica|type=transcript|length=480bp
AAACTCCTAATCCTTTTGCGAAACCCAAGGtggttccaaaattacgaacA
CGTCAAACCTCAAACGTAAAAAGAGGATTGTTCAATTTTTATGGAAGTGA
TGCTAATTCTGGTATGACTGTTGAAGAGATCAATGATGAACATTGCATGG
AAGTTGAAGACAGAATGATTGTTGAAGAAAGCCATGACCGTACTTTGAAA
TCACCTGAAAAAGTTGGTAAGTAATGAGCAATTTCCAAAATAGAATGTAG
TGGCCTGTCCTCGTTCACGCTAGTAAAAAGAGCCTAATATTTTTGGTAAT
TCGAAATGTTCAGGTTCTCCAAAGGATCAAGATGAATTTATCCAACCTCA
GTCCGAGCTCTGGGTCTGAACCAGTAGTATataaacaatatttttaaacC
TTTTGTCTGTTGCATCCTTTCATCATGTTACTTTATTTTGCTCTTCTTTT
CTTAATGAAACAGTAGATGTTGAAGATGGG
Run BLAST on NCBI

transcript from alignment at scaffold_145:446444..447796-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048690 ID=TCONS_00048690|Name=TCONS_00048690|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at scaffold_145:446444..447796- (Clytia hemisphaerica)
AAACTCCTAATCCTTTTGCGAAACCCAAGGTAATATTATTTGAATAACTA
CATCATCCCCTTTAGTGCGTACGTACTATGTGGACGACCCCATATTGATT
GCTTTAACGAGCAACAAATTTATCTTAACTTTCTGAAATTAAAATCTGCA
AACTTTCACACAGCATGACATTAAAATGACAAAAAATTGCCAAGGAAATT
AGTACAGTACCATTTTTTTATTACTAGGTGGTTCCAAAATTACGAACACG
TCAAACCTCAAACGTAAAAAGAGGATTGTTCAATTTTTATGGAAGTGATG
CTAATTCTGGTAAGTATTTAAACAATTTCCAACAAGTCTGTGTACTCATT
TTTAAACAATACTTTAAAGACTTTTAAGAGATTATCACATCATTTTTTTA
TATTTGGCTTAGAGATACCTTTATGGTCCTTGAAATTTTAGGACCATAAA
AGGAATCCTCTTAGTCAAATATAAGAAATCATCTGATAATCCCTTTAAGC
TCATTTGTTTTTTCTACCAAAATATTATAGAGGCCCCCCCAGCGGACCCT
CAATTCACGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCACGCAA
ATTTTCCTCCAGTTTCACGCAATAACCCGATTTTTCAGGAAATCGGGGAA
ACATTGGAAAATCGGGAAAACTGCACATGATCGGTGGAAAAAAGGGAAAA
TTCACATATTCAAGAACGACATAGCCCAGATTCACGCATTCACGCAATCA
AAAAGTCAATTTTCACGTTCACGCAAGTTTTTTCAATTCACGCAATCAGG
CATTTTTTTTTCCAATTTTCACGCATTCACGCATCCGAAAATGCCCATTC
ACGCATTCACGCAAACCGCTGGGGGGGGCCCCNAATCCTCTTAGTCAAAT
ATAAAAAATCATCTGATAATCCCTTTAAGCTCATTTGTTTTTTCTACCAA
AATATTATACAGAAGTTTTTTCCTCTTACCTAAGGTATGACTGTTGAAGA
GATCAATGATGAACATTGCATGGAAGTTGAAGACAGAATGATTGTTGAAG
AAAGCCATGACCGTACTTTGAAATCACCTGAAAAAGTTGGTAAGTAATGA
GCAATTTCCAAAATAGAATGTAGTGGCCTGTCCTCGTTCACGCTAGTAAA
AAGAGCCTAATATTTTTGGTAATTCGAAATGTTCAGGTTCTCCAAAGGAT
CAAGATGAATTTATCCAACCTCAGTCCGAGCTCTGGGTCTGAACCAGTAG
TATATAAACAATATTTTTAAACCTTTTGTCTGTTGCATCCTTTCATCATG
TTACTTTATTTTGCTCTTCTTTTCTTAATGAAACAGTAGATGTTGAAGAT
GGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030936XLOC_030936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048690-exon-scaffold_145-1575043694:447768..447796TCONS_00048690-exon-scaffold_145-1575043694:447768..447796Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1575043694:447488..447569TCONS_00048690-exon-scaffold_145-1575043694:447488..447569Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1575043694:446444..446812TCONS_00048690-exon-scaffold_145-1575043694:446444..446812Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1510915933:447768..447796TCONS_00048690-exon-scaffold_145-1510915933:447768..447796Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1510915933:447488..447569TCONS_00048690-exon-scaffold_145-1510915933:447488..447569Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1510915933:446444..446812TCONS_00048690-exon-scaffold_145-1510915933:446444..446812Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1491911889:447768..447796TCONS_00048690-exon-scaffold_145-1491911889:447768..447796Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1491911889:447488..447569TCONS_00048690-exon-scaffold_145-1491911889:447488..447569Clytia hemisphaericaexon
TCONS_00048690-exon-scaffold_145-1491911889:446444..446812TCONS_00048690-exon-scaffold_145-1491911889:446444..446812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:446444..447796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480245	0.135781	0.368364	0.145018	6.09298	4.63549	4.94643	3.25199	3.13783	2.72856	1.72756	1.43136	3.25393	2.13958	5.35303	6.16605	6.26395	4.80868	3.45172	7.39109	4.94011	4.69365	2.11298	1.61629	0	0.125444	6.00405	5.36489	2.52875	3.03014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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